RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NISCHQ9Y2I1 1504 aa30.84■■■□□ 2.53
MSH5-SAPCD1-205ENST00000476085 CCDC180Q9P1Z9 1646 aa27.63■■■□□ 2.01
MSH5-SAPCD1-205ENST00000476085 ABCC9O60706 1549 aa27.5■■□□□ 1.99
MSH5-SAPCD1-205ENST00000476085 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
MSH5-SAPCD1-205ENST00000476085 NACADO15069 1562 aa26.12■■□□□ 1.77
MSH5-SAPCD1-205ENST00000476085 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
MSH5-SAPCD1-205ENST00000476085 DNAJC5BQ9UF47 199 aa25.86■■□□□ 1.73
MSH5-SAPCD1-205ENST00000476085 MYO15BQ96JP2 1530 aa25.85■■□□□ 1.73
MSH5-SAPCD1-205ENST00000476085 UNC13AQ9UPW8 1703 aa25.7■■□□□ 1.7
MSH5-SAPCD1-205ENST00000476085 PABPN1Q86U42 306 aaKnown RBP eCLIP25.63■■□□□ 1.697e-8■□□□□ 9.5
MSH5-SAPCD1-205ENST00000476085 ZCCHC6Q5VYS8 1495 aaKnown RBP25.57■■□□□ 1.68
MSH5-SAPCD1-205ENST00000476085 BICRAQ9NZM4 1560 aa25.55■■□□□ 1.68
MSH5-SAPCD1-205ENST00000476085 DCAF1Q9Y4B6 1507 aa25.53■■□□□ 1.68
MSH5-SAPCD1-205ENST00000476085 SHROOM4Q9ULL8 1493 aa25.19■■□□□ 1.62
MSH5-SAPCD1-205ENST00000476085 SCRIBQ14160 1630 aa25.1■■□□□ 1.61
MSH5-SAPCD1-205ENST00000476085 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
MSH5-SAPCD1-205ENST00000476085 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
MSH5-SAPCD1-205ENST00000476085 CECR2Q9BXF3 1484 aa24.79■■□□□ 1.56
MSH5-SAPCD1-205ENST00000476085 NCAPD3P42695 1498 aa24.15■■□□□ 1.46
MSH5-SAPCD1-205ENST00000476085 ATAD2BQ9ULI0 1458 aa24.05■■□□□ 1.44
MSH5-SAPCD1-205ENST00000476085 SMARCA4P51532 1647 aa24.02■■□□□ 1.44
MSH5-SAPCD1-205ENST00000476085 SMARCA2P51531 1590 aa23.95■■□□□ 1.43
MSH5-SAPCD1-205ENST00000476085 HMGXB3Q12766 1538 aa23.94■■□□□ 1.42
MSH5-SAPCD1-205ENST00000476085 BAZ1AQ9NRL2 1556 aaPredicted RBP23.9■■□□□ 1.42
MSH5-SAPCD1-205ENST00000476085 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
MSH5-SAPCD1-205ENST00000476085 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
MSH5-SAPCD1-205ENST00000476085 MROH2BQ7Z745 1585 aa23.75■■□□□ 1.39
MSH5-SAPCD1-205ENST00000476085 CUX2O14529 1486 aa23.72■■□□□ 1.39
MSH5-SAPCD1-205ENST00000476085 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
MSH5-SAPCD1-205ENST00000476085 DNAJC5Q9H3Z4 198 aa23.68■■□□□ 1.38
MSH5-SAPCD1-205ENST00000476085 NESP48681 1621 aa23.68■■□□□ 1.38
MSH5-SAPCD1-205ENST00000476085 LAMC3Q9Y6N6 1575 aa23.53■■□□□ 1.36
MSH5-SAPCD1-205ENST00000476085 WIZO95785 1651 aa23.45■■□□□ 1.34
MSH5-SAPCD1-205ENST00000476085 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
MSH5-SAPCD1-205ENST00000476085 CADPSQ9ULU8 1353 aa23.39■■□□□ 1.33
MSH5-SAPCD1-205ENST00000476085 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
MSH5-SAPCD1-205ENST00000476085 KIF21AQ7Z4S6 1674 aa23.37■■□□□ 1.33
MSH5-SAPCD1-205ENST00000476085 RSF1Q96T23 1441 aaPredicted RBP23.31■■□□□ 1.32
MSH5-SAPCD1-205ENST00000476085 MRC2Q9UBG0 1479 aa23.17■■□□□ 1.3
MSH5-SAPCD1-205ENST00000476085 TOP2AP11388 1531 aaKnown RBP23.16■■□□□ 1.3
MSH5-SAPCD1-205ENST00000476085 CFTRP13569 1480 aa23.15■■□□□ 1.3
MSH5-SAPCD1-205ENST00000476085 WDR62O43379 1518 aa23.14■■□□□ 1.3
MSH5-SAPCD1-205ENST00000476085 FANCD2Q9BXW9 1451 aa23.07■■□□□ 1.28
MSH5-SAPCD1-205ENST00000476085 CEP164Q9UPV0 1460 aa23.06■■□□□ 1.28
MSH5-SAPCD1-205ENST00000476085 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
MSH5-SAPCD1-205ENST00000476085 URB2Q14146 1524 aaKnown RBP22.92■■□□□ 1.26
MSH5-SAPCD1-205ENST00000476085 PRDM2Q13029 1718 aa22.89■■□□□ 1.26
MSH5-SAPCD1-205ENST00000476085 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
MSH5-SAPCD1-205ENST00000476085 OSCARQ8IYS5 282 aa22.65■■□□□ 1.22
MSH5-SAPCD1-205ENST00000476085 IFT140Q96RY7 1462 aa22.64■■□□□ 1.21
MSH5-SAPCD1-205ENST00000476085 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
MSH5-SAPCD1-205ENST00000476085 ZNF608Q9ULD9 1512 aaPredicted RBP22.6■■□□□ 1.21
MSH5-SAPCD1-205ENST00000476085 DNMBPQ6XZF7 1577 aa22.57■■□□□ 1.2
MSH5-SAPCD1-205ENST00000476085 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
MSH5-SAPCD1-205ENST00000476085 TARBP1Q13395 1621 aaKnown RBP22.49■■□□□ 1.19
MSH5-SAPCD1-205ENST00000476085 EIF4G3O43432 1585 aaKnown RBP22.45■■□□□ 1.18
MSH5-SAPCD1-205ENST00000476085 POLA1P09884 1462 aaPredicted RBP22.44■■□□□ 1.18
MSH5-SAPCD1-205ENST00000476085 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.18
MSH5-SAPCD1-205ENST00000476085 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
MSH5-SAPCD1-205ENST00000476085 SOGA1O94964 1423 aa22.33■■□□□ 1.17
MSH5-SAPCD1-205ENST00000476085 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.17
MSH5-SAPCD1-205ENST00000476085 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.17
MSH5-SAPCD1-205ENST00000476085 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.17
MSH5-SAPCD1-205ENST00000476085 CUX1P39880 1505 aa22.31■■□□□ 1.16
MSH5-SAPCD1-205ENST00000476085 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
MSH5-SAPCD1-205ENST00000476085 CHD1O14646 1710 aa22.28■■□□□ 1.16
MSH5-SAPCD1-205ENST00000476085 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
MSH5-SAPCD1-205ENST00000476085 TDRD9Q8NDG6 1382 aaKnown RBP22.26■■□□□ 1.15
MSH5-SAPCD1-205ENST00000476085 WDR97A6NE52 1622 aa22.25■■□□□ 1.15
MSH5-SAPCD1-205ENST00000476085 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.14
MSH5-SAPCD1-205ENST00000476085 FBLN2P98095 1184 aa22.15■■□□□ 1.14
MSH5-SAPCD1-205ENST00000476085 SNAPC4Q5SXM2 1469 aa22.14■■□□□ 1.13
MSH5-SAPCD1-205ENST00000476085 GRIN2BQ13224 1484 aa22.12■■□□□ 1.13
MSH5-SAPCD1-205ENST00000476085 MAGI1Q96QZ7 1491 aaPredicted RBP22.12■■□□□ 1.13
MSH5-SAPCD1-205ENST00000476085 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
MSH5-SAPCD1-205ENST00000476085 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
MSH5-SAPCD1-205ENST00000476085 ARAP1Q96P48 1450 aa22.07■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 GAPVD1Q14C86 1478 aa22.05■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 PBRM1Q86U86 1689 aa22.02■■□□□ 1.12
MSH5-SAPCD1-205ENST00000476085 SYNJ1O43426 1573 aa22■■□□□ 1.11
MSH5-SAPCD1-205ENST00000476085 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
MSH5-SAPCD1-205ENST00000476085 BIVM-ERCC5R4GMW8 1640 aa21.97■■□□□ 1.11
MSH5-SAPCD1-205ENST00000476085 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
MSH5-SAPCD1-205ENST00000476085 GRIN2AQ12879 1464 aa21.83■■□□□ 1.09
MSH5-SAPCD1-205ENST00000476085 ADAMTS12P58397 1594 aa21.82■■□□□ 1.08
MSH5-SAPCD1-205ENST00000476085 NUP160Q12769 1436 aa21.8■■□□□ 1.08
MSH5-SAPCD1-205ENST00000476085 ERICH3Q5RHP9 1530 aa21.79■■□□□ 1.08
MSH5-SAPCD1-205ENST00000476085 FHAD1B1AJZ9 1412 aa21.79■■□□□ 1.08
MSH5-SAPCD1-205ENST00000476085 CEP170Q5SW79 1584 aa21.76■■□□□ 1.07
MSH5-SAPCD1-205ENST00000476085 TRHP20396 242 aaPredicted RBP21.73■■□□□ 1.07
MSH5-SAPCD1-205ENST00000476085 ERCC6L2Q5T890 1561 aa21.72■■□□□ 1.07
MSH5-SAPCD1-205ENST00000476085 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
MSH5-SAPCD1-205ENST00000476085 JPH4Q96JJ6 628 aa21.57■■□□□ 1.04
MSH5-SAPCD1-205ENST00000476085 IGF1RP08069 1367 aa21.57■■□□□ 1.04
MSH5-SAPCD1-205ENST00000476085 PRG4Q92954 1404 aaPredicted RBP21.54■■□□□ 1.04
MSH5-SAPCD1-205ENST00000476085 RUSC2Q8N2Y8 1516 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms