RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NISCHQ9Y2I1 1504 aa34.13■■■■□ 3.05
MSH5-SAPCD1-208ENST00000498473 CCDC180Q9P1Z9 1646 aa29.85■■■□□ 2.37
MSH5-SAPCD1-208ENST00000498473 ABCC9O60706 1549 aa29.12■■■□□ 2.25
MSH5-SAPCD1-208ENST00000498473 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
MSH5-SAPCD1-208ENST00000498473 ZCCHC6Q5VYS8 1495 aaKnown RBP28.54■■■□□ 2.16
MSH5-SAPCD1-208ENST00000498473 SHROOM4Q9ULL8 1493 aa28.39■■■□□ 2.14
MSH5-SAPCD1-208ENST00000498473 DCAF1Q9Y4B6 1507 aa27.96■■■□□ 2.07
MSH5-SAPCD1-208ENST00000498473 NACADO15069 1562 aa27.94■■■□□ 2.06
MSH5-SAPCD1-208ENST00000498473 RB1CC1Q8TDY2 1594 aa27.91■■■□□ 2.06
MSH5-SAPCD1-208ENST00000498473 SUPT5HO00267 1087 aaKnown RBP27.84■■■□□ 2.05
MSH5-SAPCD1-208ENST00000498473 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
MSH5-SAPCD1-208ENST00000498473 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
MSH5-SAPCD1-208ENST00000498473 UNC13AQ9UPW8 1703 aa27.54■■■□□ 2
MSH5-SAPCD1-208ENST00000498473 PABPN1Q86U42 306 aaKnown RBP eCLIP27.47■■□□□ 1.992e-6■■■□□ 15.7
MSH5-SAPCD1-208ENST00000498473 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
MSH5-SAPCD1-208ENST00000498473 CHIC1Q5VXU3 224 aa27.2■■□□□ 1.94
MSH5-SAPCD1-208ENST00000498473 CECR2Q9BXF3 1484 aa26.77■■□□□ 1.88
MSH5-SAPCD1-208ENST00000498473 MROH2BQ7Z745 1585 aa26.48■■□□□ 1.83
MSH5-SAPCD1-208ENST00000498473 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
MSH5-SAPCD1-208ENST00000498473 EIF4G1Q04637 1599 aaKnown RBP26.42■■□□□ 1.82
MSH5-SAPCD1-208ENST00000498473 HRCP23327 699 aa26.39■■□□□ 1.82
MSH5-SAPCD1-208ENST00000498473 SMARCA4P51532 1647 aa26.38■■□□□ 1.81
MSH5-SAPCD1-208ENST00000498473 BAZ1AQ9NRL2 1556 aaPredicted RBP26.34■■□□□ 1.81
MSH5-SAPCD1-208ENST00000498473 LOC105371045A0A1W2PR82 267 aa26.34■■□□□ 1.81
MSH5-SAPCD1-208ENST00000498473 WIZO95785 1651 aa26.3■■□□□ 1.8
MSH5-SAPCD1-208ENST00000498473 PCGF6Q9BYE7 350 aa26.29■■□□□ 1.8
MSH5-SAPCD1-208ENST00000498473 DNAJC5BQ9UF47 199 aa26.29■■□□□ 1.8
MSH5-SAPCD1-208ENST00000498473 CC2D2AQ9P2K1 1620 aa26.22■■□□□ 1.79
MSH5-SAPCD1-208ENST00000498473 ATAD2BQ9ULI0 1458 aa26.08■■□□□ 1.77
MSH5-SAPCD1-208ENST00000498473 TRIM41Q8WV44 630 aa25.96■■□□□ 1.75
MSH5-SAPCD1-208ENST00000498473 SMARCA2P51531 1590 aa25.94■■□□□ 1.74
MSH5-SAPCD1-208ENST00000498473 BAZ1BQ9UIG0 1483 aaKnown RBP25.93■■□□□ 1.74
MSH5-SAPCD1-208ENST00000498473 PEG3Q9GZU2 1588 aa25.91■■□□□ 1.74
MSH5-SAPCD1-208ENST00000498473 TRIM26Q12899 539 aaPredicted RBP25.84■■□□□ 1.73
MSH5-SAPCD1-208ENST00000498473 NCAPD3P42695 1498 aa25.83■■□□□ 1.73
MSH5-SAPCD1-208ENST00000498473 PPARGC1BQ86YN6 1023 aaKnown RBP25.8■■□□□ 1.72
MSH5-SAPCD1-208ENST00000498473 TOP2AP11388 1531 aaKnown RBP25.79■■□□□ 1.72
MSH5-SAPCD1-208ENST00000498473 HMGXB3Q12766 1538 aa25.72■■□□□ 1.71
MSH5-SAPCD1-208ENST00000498473 FAM9AQ8IZU1 332 aaPredicted RBP25.71■■□□□ 1.71
MSH5-SAPCD1-208ENST00000498473 CCDC88BA6NC98 1476 aa25.64■■□□□ 1.7
MSH5-SAPCD1-208ENST00000498473 PELP1Q8IZL8 1130 aaKnown RBP25.44■■□□□ 1.66
MSH5-SAPCD1-208ENST00000498473 NESP48681 1621 aa25.43■■□□□ 1.66
MSH5-SAPCD1-208ENST00000498473 EHMT2Q96KQ7 1210 aa25.43■■□□□ 1.66
MSH5-SAPCD1-208ENST00000498473 ZEB1P37275 1124 aaPredicted RBP25.28■■□□□ 1.64
MSH5-SAPCD1-208ENST00000498473 ABCC8Q09428 1581 aa25.27■■□□□ 1.64
MSH5-SAPCD1-208ENST00000498473 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
MSH5-SAPCD1-208ENST00000498473 CFTRP13569 1480 aa25.17■■□□□ 1.62
MSH5-SAPCD1-208ENST00000498473 LAMC3Q9Y6N6 1575 aa25.05■■□□□ 1.6
MSH5-SAPCD1-208ENST00000498473 SOGA1O94964 1423 aa25.04■■□□□ 1.6
MSH5-SAPCD1-208ENST00000498473 KIF21AQ7Z4S6 1674 aa25.03■■□□□ 1.6
MSH5-SAPCD1-208ENST00000498473 FANCD2Q9BXW9 1451 aa25■■□□□ 1.59
MSH5-SAPCD1-208ENST00000498473 PRDM2Q13029 1718 aa24.97■■□□□ 1.59
MSH5-SAPCD1-208ENST00000498473 WRNQ14191 1432 aaPredicted RBP eCLIP24.97■■□□□ 1.59
MSH5-SAPCD1-208ENST00000498473 EEA1Q15075 1411 aa24.94■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 ERCC6Q03468 1493 aa24.94■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 RUSC2Q8N2Y8 1516 aa24.93■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 CEP162Q5TB80 1403 aa24.92■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 TNIKQ9UKE5 1360 aa24.92■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 PDS5BQ9NTI5 1447 aa24.9■■□□□ 1.58
MSH5-SAPCD1-208ENST00000498473 CSRNP3Q8WYN3 585 aa24.87■■□□□ 1.57
MSH5-SAPCD1-208ENST00000498473 CEP164Q9UPV0 1460 aa24.87■■□□□ 1.57
MSH5-SAPCD1-208ENST00000498473 MYT1Q01538 1121 aa24.82■■□□□ 1.56
MSH5-SAPCD1-208ENST00000498473 SYNJ1O43426 1573 aa24.8■■□□□ 1.56
MSH5-SAPCD1-208ENST00000498473 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.77■■□□□ 1.56
MSH5-SAPCD1-208ENST00000498473 CUX1P39880 1505 aa24.76■■□□□ 1.55
MSH5-SAPCD1-208ENST00000498473 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
MSH5-SAPCD1-208ENST00000498473 GOLGA3Q08378 1498 aa24.76■■□□□ 1.55
MSH5-SAPCD1-208ENST00000498473 UBTFP17480 764 aaKnown RBP24.7■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 CCER1Q8TC90 406 aaPredicted RBP24.68■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 TOPBP1Q92547 1522 aa24.66■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 MRC2Q9UBG0 1479 aa24.65■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 KIF21BO75037 1637 aa24.64■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 THOC2Q8NI27 1593 aaKnown RBP24.64■■□□□ 1.54
MSH5-SAPCD1-208ENST00000498473 TTBK1Q5TCY1 1321 aaPredicted RBP24.63■■□□□ 1.53
MSH5-SAPCD1-208ENST00000498473 TOP2BQ02880 1626 aa24.6■■□□□ 1.53
MSH5-SAPCD1-208ENST00000498473 DNMBPQ6XZF7 1577 aa24.59■■□□□ 1.53
MSH5-SAPCD1-208ENST00000498473 FGD5Q6ZNL6 1462 aa24.58■■□□□ 1.53
MSH5-SAPCD1-208ENST00000498473 RAD54L2Q9Y4B4 1467 aa24.57■■□□□ 1.52
MSH5-SAPCD1-208ENST00000498473 BIVM-ERCC5R4GMW8 1640 aa24.55■■□□□ 1.52
MSH5-SAPCD1-208ENST00000498473 POLA1P09884 1462 aaPredicted RBP24.53■■□□□ 1.52
MSH5-SAPCD1-208ENST00000498473 WDR62O43379 1518 aa24.52■■□□□ 1.52
MSH5-SAPCD1-208ENST00000498473 CLIP1P30622 1438 aa24.45■■□□□ 1.5
MSH5-SAPCD1-208ENST00000498473 CUX2O14529 1486 aa24.44■■□□□ 1.5
MSH5-SAPCD1-208ENST00000498473 RAPGEF2Q9Y4G8 1499 aa24.43■■□□□ 1.5
MSH5-SAPCD1-208ENST00000498473 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.49
MSH5-SAPCD1-208ENST00000498473 VPS8Q8N3P4 1428 aa24.37■■□□□ 1.49
MSH5-SAPCD1-208ENST00000498473 ZNF608Q9ULD9 1512 aaPredicted RBP24.36■■□□□ 1.49
MSH5-SAPCD1-208ENST00000498473 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.483e-8■■■■■ 34.3
MSH5-SAPCD1-208ENST00000498473 TARBP1Q13395 1621 aaKnown RBP24.32■■□□□ 1.48
MSH5-SAPCD1-208ENST00000498473 SCAF1Q9H7N4 1312 aaKnown RBP24.31■■□□□ 1.48
MSH5-SAPCD1-208ENST00000498473 DIEXFQ68CQ4 756 aaKnown RBP24.24■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 ERICH3Q5RHP9 1530 aa24.23■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 WDR97A6NE52 1622 aa24.23■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 PRXQ9BXM0 1461 aa24.23■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 ABCA10Q8WWZ4 1543 aa24.22■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 IFT140Q96RY7 1462 aa24.22■■□□□ 1.47
MSH5-SAPCD1-208ENST00000498473 HNRNPUL2Q1KMD3 747 aaKnown RBP24.17■■□□□ 1.46
MSH5-SAPCD1-208ENST00000498473 EIF4G3O43432 1585 aaKnown RBP24.16■■□□□ 1.46
MSH5-SAPCD1-208ENST00000498473 KIF27Q86VH2 1401 aa24.15■■□□□ 1.46
MSH5-SAPCD1-208ENST00000498473 RANGAP1P46060 587 aaPredicted RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms