RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NISCHQ9Y2I1 1504 aa39.45■■■■□ 3.91
MSH5-SAPCD1-206ENST00000491552 CCDC180Q9P1Z9 1646 aa35.07■■■■□ 3.21
MSH5-SAPCD1-206ENST00000491552 ABCC9O60706 1549 aa34.2■■■■□ 3.07
MSH5-SAPCD1-206ENST00000491552 RB1CC1Q8TDY2 1594 aa32.96■■■□□ 2.87
MSH5-SAPCD1-206ENST00000491552 NACADO15069 1562 aa32.94■■■□□ 2.86
MSH5-SAPCD1-206ENST00000491552 ZCCHC6Q5VYS8 1495 aaKnown RBP32.9■■■□□ 2.86
MSH5-SAPCD1-206ENST00000491552 DCAF8L2P0C7V8 631 aa32.88■■■□□ 2.85
MSH5-SAPCD1-206ENST00000491552 MYO15BQ96JP2 1530 aa32.77■■■□□ 2.84
MSH5-SAPCD1-206ENST00000491552 DCAF1Q9Y4B6 1507 aa32.66■■■□□ 2.82
MSH5-SAPCD1-206ENST00000491552 UNC13AQ9UPW8 1703 aa32.2■■■□□ 2.75
MSH5-SAPCD1-206ENST00000491552 SCRIBQ14160 1630 aa32■■■□□ 2.71
MSH5-SAPCD1-206ENST00000491552 BICRAQ9NZM4 1560 aa31.94■■■□□ 2.7
MSH5-SAPCD1-206ENST00000491552 PABPN1Q86U42 306 aaKnown RBP eCLIP31.94■■■□□ 2.71e-6■■■□□ 14.8
MSH5-SAPCD1-206ENST00000491552 SHROOM4Q9ULL8 1493 aa31.65■■■□□ 2.66
MSH5-SAPCD1-206ENST00000491552 DNAJC5BQ9UF47 199 aa31.26■■■□□ 2.59
MSH5-SAPCD1-206ENST00000491552 EIF4G1Q04637 1599 aaKnown RBP31.1■■■□□ 2.57
MSH5-SAPCD1-206ENST00000491552 CC2D2AQ9P2K1 1620 aa30.95■■■□□ 2.55
MSH5-SAPCD1-206ENST00000491552 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
MSH5-SAPCD1-206ENST00000491552 SMARCA4P51532 1647 aa30.62■■■□□ 2.49
MSH5-SAPCD1-206ENST00000491552 BAZ1AQ9NRL2 1556 aaPredicted RBP30.58■■■□□ 2.49
MSH5-SAPCD1-206ENST00000491552 ATAD2BQ9ULI0 1458 aa30.41■■■□□ 2.46
MSH5-SAPCD1-206ENST00000491552 MROH2BQ7Z745 1585 aa30.41■■■□□ 2.46
MSH5-SAPCD1-206ENST00000491552 SMARCA2P51531 1590 aa30.4■■■□□ 2.46
MSH5-SAPCD1-206ENST00000491552 NCAPD3P42695 1498 aa30.38■■■□□ 2.45
MSH5-SAPCD1-206ENST00000491552 PEG3Q9GZU2 1588 aa30.31■■■□□ 2.44
MSH5-SAPCD1-206ENST00000491552 HMGXB3Q12766 1538 aa30.27■■■□□ 2.44
MSH5-SAPCD1-206ENST00000491552 BAZ1BQ9UIG0 1483 aaKnown RBP30.18■■■□□ 2.42
MSH5-SAPCD1-206ENST00000491552 WIZO95785 1651 aa30.09■■■□□ 2.41
MSH5-SAPCD1-206ENST00000491552 RSF1Q96T23 1441 aaPredicted RBP30.07■■■□□ 2.4
MSH5-SAPCD1-206ENST00000491552 TOP2AP11388 1531 aaKnown RBP29.79■■■□□ 2.36
MSH5-SAPCD1-206ENST00000491552 NESP48681 1621 aa29.62■■■□□ 2.33
MSH5-SAPCD1-206ENST00000491552 LAMC3Q9Y6N6 1575 aa29.58■■■□□ 2.33
MSH5-SAPCD1-206ENST00000491552 ERCC6Q03468 1493 aa29.49■■■□□ 2.31
MSH5-SAPCD1-206ENST00000491552 CADPSQ9ULU8 1353 aa29.49■■■□□ 2.31
MSH5-SAPCD1-206ENST00000491552 CCDC88BA6NC98 1476 aa29.41■■■□□ 2.3
MSH5-SAPCD1-206ENST00000491552 PDS5BQ9NTI5 1447 aa29.37■■■□□ 2.29
MSH5-SAPCD1-206ENST00000491552 SUPT5HO00267 1087 aaKnown RBP29.35■■■□□ 2.29
MSH5-SAPCD1-206ENST00000491552 CFTRP13569 1480 aa29.34■■■□□ 2.29
MSH5-SAPCD1-206ENST00000491552 KIF21AQ7Z4S6 1674 aa29.3■■■□□ 2.28
MSH5-SAPCD1-206ENST00000491552 THOC2Q8NI27 1593 aaKnown RBP29.19■■■□□ 2.26
MSH5-SAPCD1-206ENST00000491552 FANCD2Q9BXW9 1451 aa29.17■■■□□ 2.26
MSH5-SAPCD1-206ENST00000491552 PRDM2Q13029 1718 aa29.16■■■□□ 2.26
MSH5-SAPCD1-206ENST00000491552 CUX2O14529 1486 aa29.16■■■□□ 2.26
MSH5-SAPCD1-206ENST00000491552 CEP164Q9UPV0 1460 aa29.14■■■□□ 2.26
MSH5-SAPCD1-206ENST00000491552 MRC2Q9UBG0 1479 aa29.08■■■□□ 2.25
MSH5-SAPCD1-206ENST00000491552 WDR62O43379 1518 aa28.98■■■□□ 2.23
MSH5-SAPCD1-206ENST00000491552 URB2Q14146 1524 aaKnown RBP28.87■■■□□ 2.21
MSH5-SAPCD1-206ENST00000491552 ABCC8Q09428 1581 aa28.71■■■□□ 2.19
MSH5-SAPCD1-206ENST00000491552 TOPBP1Q92547 1522 aa28.71■■■□□ 2.19
MSH5-SAPCD1-206ENST00000491552 DNMBPQ6XZF7 1577 aa28.7■■■□□ 2.18
MSH5-SAPCD1-206ENST00000491552 CUX1P39880 1505 aa28.53■■■□□ 2.16
MSH5-SAPCD1-206ENST00000491552 IFT140Q96RY7 1462 aa28.52■■■□□ 2.16
MSH5-SAPCD1-206ENST00000491552 POLA1P09884 1462 aaPredicted RBP28.47■■■□□ 2.15
MSH5-SAPCD1-206ENST00000491552 FGD5Q6ZNL6 1462 aa28.42■■■□□ 2.14
MSH5-SAPCD1-206ENST00000491552 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
MSH5-SAPCD1-206ENST00000491552 WRNQ14191 1432 aaPredicted RBP eCLIP28.37■■■□□ 2.13
MSH5-SAPCD1-206ENST00000491552 ZNF608Q9ULD9 1512 aaPredicted RBP28.36■■■□□ 2.13
MSH5-SAPCD1-206ENST00000491552 SOGA1O94964 1423 aa28.35■■■□□ 2.13
MSH5-SAPCD1-206ENST00000491552 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
MSH5-SAPCD1-206ENST00000491552 BIVM-ERCC5R4GMW8 1640 aa28.32■■■□□ 2.12
MSH5-SAPCD1-206ENST00000491552 SYNJ1O43426 1573 aa28.31■■■□□ 2.12
MSH5-SAPCD1-206ENST00000491552 TOP2BQ02880 1626 aa28.31■■■□□ 2.12
MSH5-SAPCD1-206ENST00000491552 EIF4G3O43432 1585 aaKnown RBP28.28■■■□□ 2.12
MSH5-SAPCD1-206ENST00000491552 WDR97A6NE52 1622 aa28.21■■■□□ 2.11
MSH5-SAPCD1-206ENST00000491552 AQRO60306 1485 aaKnown RBP eCLIP28.2■■■□□ 2.11e-12■■■■□ 24.4
MSH5-SAPCD1-206ENST00000491552 TDRD9Q8NDG6 1382 aaKnown RBP28.16■■■□□ 2.1
MSH5-SAPCD1-206ENST00000491552 ABCA10Q8WWZ4 1543 aa28.15■■■□□ 2.1
MSH5-SAPCD1-206ENST00000491552 DNAJC5Q9H3Z4 198 aa28.11■■■□□ 2.09
MSH5-SAPCD1-206ENST00000491552 ABCA5Q8WWZ7 1642 aa28.04■■■□□ 2.08
MSH5-SAPCD1-206ENST00000491552 GAPVD1Q14C86 1478 aa28.03■■■□□ 2.08
MSH5-SAPCD1-206ENST00000491552 GRIN2BQ13224 1484 aa28.02■■■□□ 2.08
MSH5-SAPCD1-206ENST00000491552 PBRM1Q86U86 1689 aa28■■■□□ 2.07
MSH5-SAPCD1-206ENST00000491552 SNAPC4Q5SXM2 1469 aa27.98■■■□□ 2.07
MSH5-SAPCD1-206ENST00000491552 MAGI1Q96QZ7 1491 aaPredicted RBP27.94■■■□□ 2.06
MSH5-SAPCD1-206ENST00000491552 OSCARQ8IYS5 282 aa27.91■■■□□ 2.06
MSH5-SAPCD1-206ENST00000491552 CHD1O14646 1710 aa27.91■■■□□ 2.06
MSH5-SAPCD1-206ENST00000491552 SYNJ2O15056 1496 aa27.83■■■□□ 2.05
MSH5-SAPCD1-206ENST00000491552 FBLN2P98095 1184 aa27.83■■■□□ 2.05
MSH5-SAPCD1-206ENST00000491552 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
MSH5-SAPCD1-206ENST00000491552 CHMP7Q8WUX9 453 aaPredicted RBP27.78■■■□□ 2.04
MSH5-SAPCD1-206ENST00000491552 ADAMTS12P58397 1594 aa27.77■■■□□ 2.04
MSH5-SAPCD1-206ENST00000491552 KIF27Q86VH2 1401 aa27.77■■■□□ 2.04
MSH5-SAPCD1-206ENST00000491552 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
MSH5-SAPCD1-206ENST00000491552 FHAD1B1AJZ9 1412 aa27.71■■■□□ 2.03
MSH5-SAPCD1-206ENST00000491552 GRIN2AQ12879 1464 aa27.66■■■□□ 2.02
MSH5-SAPCD1-206ENST00000491552 IGF1RP08069 1367 aa27.62■■■□□ 2.01
MSH5-SAPCD1-206ENST00000491552 CLASP1Q7Z460 1538 aa27.61■■■□□ 2.01
MSH5-SAPCD1-206ENST00000491552 CUL7Q14999 1698 aa27.6■■■□□ 2.01
MSH5-SAPCD1-206ENST00000491552 NUP160Q12769 1436 aa27.53■■■□□ 2
MSH5-SAPCD1-206ENST00000491552 CEP170Q5SW79 1584 aa27.52■■■□□ 2
MSH5-SAPCD1-206ENST00000491552 RUSC2Q8N2Y8 1516 aa27.52■■■□□ 2
MSH5-SAPCD1-206ENST00000491552 ARHGEF11O15085 1522 aa27.51■■□□□ 1.99
MSH5-SAPCD1-206ENST00000491552 RIMBP3CA6NJZ7 1639 aa27.5■■□□□ 1.99
MSH5-SAPCD1-206ENST00000491552 RIMBP3BA6NNM3 1639 aa27.5■■□□□ 1.99
MSH5-SAPCD1-206ENST00000491552 RIMBP3Q9UFD9 1639 aa27.5■■□□□ 1.99
MSH5-SAPCD1-206ENST00000491552 CARMIL1Q5VZK9 1371 aa27.48■■□□□ 1.99
MSH5-SAPCD1-206ENST00000491552 CHIC1Q5VXU3 224 aa27.43■■□□□ 1.98
MSH5-SAPCD1-206ENST00000491552 RAPGEF2Q9Y4G8 1499 aa27.33■■□□□ 1.97
MSH5-SAPCD1-206ENST00000491552 SHROOM2Q13796 1616 aa27.32■■□□□ 1.96
MSH5-SAPCD1-206ENST00000491552 EEA1Q15075 1411 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms