RNA–Protein interactions for RNA: ENST00000484309.5

MSH5-216, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 857 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-216ENST00000484309 NISCHQ9Y2I1 1504 aa30.19■■■□□ 2.42
MSH5-216ENST00000484309 CCDC180Q9P1Z9 1646 aa26.98■■□□□ 1.91
MSH5-216ENST00000484309 ABCC9O60706 1549 aa26.57■■□□□ 1.84
MSH5-216ENST00000484309 RB1CC1Q8TDY2 1594 aa25.44■■□□□ 1.66
MSH5-216ENST00000484309 NACADO15069 1562 aa25.33■■□□□ 1.65
MSH5-216ENST00000484309 DCAF8L2P0C7V8 631 aa25.32■■□□□ 1.64
MSH5-216ENST00000484309 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
MSH5-216ENST00000484309 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
MSH5-216ENST00000484309 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
MSH5-216ENST00000484309 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
MSH5-216ENST00000484309 PABPN1Q86U42 306 aaKnown RBP eCLIP24.76■■□□□ 1.559e-7■■■□□ 16.8
MSH5-216ENST00000484309 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
MSH5-216ENST00000484309 SCRIBQ14160 1630 aa24.66■■□□□ 1.54
MSH5-216ENST00000484309 DNAJC5BQ9UF47 199 aa24.49■■□□□ 1.51
MSH5-216ENST00000484309 SHROOM4Q9ULL8 1493 aa24.3■■□□□ 1.48
MSH5-216ENST00000484309 EIF4G1Q04637 1599 aaKnown RBP24.06■■□□□ 1.44
MSH5-216ENST00000484309 CC2D2AQ9P2K1 1620 aa24.03■■□□□ 1.44
MSH5-216ENST00000484309 CECR2Q9BXF3 1484 aa23.85■■□□□ 1.41
MSH5-216ENST00000484309 SMARCA4P51532 1647 aa23.52■■□□□ 1.36
MSH5-216ENST00000484309 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
MSH5-216ENST00000484309 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
MSH5-216ENST00000484309 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
MSH5-216ENST00000484309 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
MSH5-216ENST00000484309 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
MSH5-216ENST00000484309 HMGXB3Q12766 1538 aa23.26■■□□□ 1.31
MSH5-216ENST00000484309 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
MSH5-216ENST00000484309 BAZ1BQ9UIG0 1483 aaKnown RBP23.19■■□□□ 1.3
MSH5-216ENST00000484309 WIZO95785 1651 aa23.12■■□□□ 1.29
MSH5-216ENST00000484309 NESP48681 1621 aa22.95■■□□□ 1.26
MSH5-216ENST00000484309 RSF1Q96T23 1441 aaPredicted RBP22.92■■□□□ 1.26
MSH5-216ENST00000484309 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
MSH5-216ENST00000484309 LAMC3Q9Y6N6 1575 aa22.81■■□□□ 1.24
MSH5-216ENST00000484309 TOP2AP11388 1531 aaKnown RBP22.78■■□□□ 1.24
MSH5-216ENST00000484309 KIF21AQ7Z4S6 1674 aa22.76■■□□□ 1.23
MSH5-216ENST00000484309 CADPSQ9ULU8 1353 aa22.65■■□□□ 1.22
MSH5-216ENST00000484309 THOC2Q8NI27 1593 aaKnown RBP22.65■■□□□ 1.22
MSH5-216ENST00000484309 CUX2O14529 1486 aa22.65■■□□□ 1.22
MSH5-216ENST00000484309 PDS5BQ9NTI5 1447 aa22.61■■□□□ 1.21
MSH5-216ENST00000484309 CCDC88BA6NC98 1476 aa22.5■■□□□ 1.19
MSH5-216ENST00000484309 PRDM2Q13029 1718 aa22.5■■□□□ 1.19
MSH5-216ENST00000484309 CFTRP13569 1480 aa22.49■■□□□ 1.19
MSH5-216ENST00000484309 FANCD2Q9BXW9 1451 aa22.45■■□□□ 1.18
MSH5-216ENST00000484309 MRC2Q9UBG0 1479 aa22.44■■□□□ 1.18
MSH5-216ENST00000484309 CEP164Q9UPV0 1460 aa22.44■■□□□ 1.18
MSH5-216ENST00000484309 WDR62O43379 1518 aa22.39■■□□□ 1.17
MSH5-216ENST00000484309 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
MSH5-216ENST00000484309 URB2Q14146 1524 aaKnown RBP22.26■■□□□ 1.15
MSH5-216ENST00000484309 DNAJC5Q9H3Z4 198 aa22.12■■□□□ 1.13
MSH5-216ENST00000484309 TOPBP1Q92547 1522 aa22.09■■□□□ 1.13
MSH5-216ENST00000484309 DNMBPQ6XZF7 1577 aa22.06■■□□□ 1.12
MSH5-216ENST00000484309 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
MSH5-216ENST00000484309 IFT140Q96RY7 1462 aa21.95■■□□□ 1.1
MSH5-216ENST00000484309 ZNF608Q9ULD9 1512 aaPredicted RBP21.93■■□□□ 1.1
MSH5-216ENST00000484309 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
MSH5-216ENST00000484309 POLA1P09884 1462 aaPredicted RBP21.88■■□□□ 1.09
MSH5-216ENST00000484309 EIF4G3O43432 1585 aaKnown RBP21.87■■□□□ 1.09
MSH5-216ENST00000484309 CUX1P39880 1505 aa21.87■■□□□ 1.09
MSH5-216ENST00000484309 FGD5Q6ZNL6 1462 aa21.83■■□□□ 1.08
MSH5-216ENST00000484309 RAD54L2Q9Y4B4 1467 aa21.82■■□□□ 1.08
MSH5-216ENST00000484309 AQRO60306 1485 aaKnown RBP eCLIP21.76■■□□□ 1.074e-9■■■■■ 41.7
MSH5-216ENST00000484309 SOGA1O94964 1423 aa21.75■■□□□ 1.07
MSH5-216ENST00000484309 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
MSH5-216ENST00000484309 CHD1O14646 1710 aa21.7■■□□□ 1.06
MSH5-216ENST00000484309 TDRD9Q8NDG6 1382 aaKnown RBP21.68■■□□□ 1.06
MSH5-216ENST00000484309 BIVM-ERCC5R4GMW8 1640 aa21.67■■□□□ 1.06
MSH5-216ENST00000484309 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
MSH5-216ENST00000484309 OSCARQ8IYS5 282 aa21.65■■□□□ 1.06
MSH5-216ENST00000484309 TOP2BQ02880 1626 aa21.64■■□□□ 1.05
MSH5-216ENST00000484309 WRNQ14191 1432 aaPredicted RBP eCLIP21.63■■□□□ 1.05
MSH5-216ENST00000484309 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
MSH5-216ENST00000484309 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
MSH5-216ENST00000484309 ABCA10Q8WWZ4 1543 aa21.55■■□□□ 1.04
MSH5-216ENST00000484309 ABCA5Q8WWZ7 1642 aa21.55■■□□□ 1.04
MSH5-216ENST00000484309 FBLN2P98095 1184 aa21.54■■□□□ 1.04
MSH5-216ENST00000484309 GRIN2BQ13224 1484 aa21.52■■□□□ 1.04
MSH5-216ENST00000484309 GAPVD1Q14C86 1478 aa21.52■■□□□ 1.03
MSH5-216ENST00000484309 MAGI1Q96QZ7 1491 aaPredicted RBP21.48■■□□□ 1.03
MSH5-216ENST00000484309 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
MSH5-216ENST00000484309 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
MSH5-216ENST00000484309 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
MSH5-216ENST00000484309 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
MSH5-216ENST00000484309 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
MSH5-216ENST00000484309 CHMP7Q8WUX9 453 aaPredicted RBP21.4■■□□□ 1.02
MSH5-216ENST00000484309 ARHGEF11O15085 1522 aa21.39■■□□□ 1.02
MSH5-216ENST00000484309 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
MSH5-216ENST00000484309 CLASP1Q7Z460 1538 aa21.34■■□□□ 1.01
MSH5-216ENST00000484309 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
MSH5-216ENST00000484309 GRIN2AQ12879 1464 aa21.27■■□□□ 1
MSH5-216ENST00000484309 FHAD1B1AJZ9 1412 aa21.23■□□□□ 0.99
MSH5-216ENST00000484309 CEP170Q5SW79 1584 aa21.23■□□□□ 0.99
MSH5-216ENST00000484309 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
MSH5-216ENST00000484309 KIF27Q86VH2 1401 aa21.16■□□□□ 0.98
MSH5-216ENST00000484309 CYB5RLQ6IPT4 315 aa21.16■□□□□ 0.98
MSH5-216ENST00000484309 NUP160Q12769 1436 aa21.15■□□□□ 0.98
MSH5-216ENST00000484309 CUL7Q14999 1698 aa21.13■□□□□ 0.97
MSH5-216ENST00000484309 ERCC6L2Q5T890 1561 aa21.1■□□□□ 0.97
MSH5-216ENST00000484309 SHROOM2Q13796 1616 aa21.08■□□□□ 0.97
MSH5-216ENST00000484309 IGF1RP08069 1367 aa21.08■□□□□ 0.96
MSH5-216ENST00000484309 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
MSH5-216ENST00000484309 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms