Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.85e-15■■■■■ 27
UPF1Q92900 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.671e-7■■■■■ 27
UPF1Q92900 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)9.96□□□□□ -0.812e-6■■■■■ 27
UPF1Q92900 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC28.98■■■□□ 2.231e-11■■■■■ 27
UPF1Q92900 DAB2IP-204ENST00000394340 1006 ntTSL 324.26■■□□□ 1.474e-8■■■■■ 27
UPF1Q92900 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.31e-11■■■■■ 27
UPF1Q92900 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC22.93■■□□□ 1.261e-11■■■■■ 27
UPF1Q92900 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.154e-8■■■■■ 27
UPF1Q92900 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.924e-8■■■■■ 27
UPF1Q92900 DAB2IP-206ENST00000436835 928 ntTSL 320.64■□□□□ 0.894e-8■■■■■ 27
UPF1Q92900 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.284e-8■■■■■ 27
UPF1Q92900 DRAM1-201ENST00000258534 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.424e-8■■■■■ 27
UPF1Q92900 DRAM1-204ENST00000549066 427 ntTSL 310.41□□□□□ -0.744e-8■■■■■ 27
UPF1Q92900 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC9.9□□□□□ -0.824e-8■■■■■ 27
UPF1Q92900 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.064e-8■■■■■ 27
UPF1Q92900 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC8.33□□□□□ -1.084e-8■■■■■ 27
UPF1Q92900 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.31e-6■■■■■ 27
UPF1Q92900 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.951e-6■■■■■ 27
UPF1Q92900 P4HA2-204ENST00000379100 2563 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.391e-6■■■■■ 27
UPF1Q92900 P4HA2-205ENST00000379104 2569 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.391e-6■■■■■ 27
UPF1Q92900 P4HA2-203ENST00000379086 2223 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.591e-6■■■■■ 27
UPF1Q92900 P4HA2-218ENST00000474628 743 ntTSL 210.64□□□□□ -0.711e-6■■■■■ 27
UPF1Q92900 P4HA2-207ENST00000401867 3349 ntAPPRIS P3 TSL 5 BASIC10.54□□□□□ -0.722e-8■■■■■ 27
UPF1Q92900 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.92■□□□□ 0.37e-32■■■■■ 27
UPF1Q92900 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.791e-6■■■■■ 26.9
UPF1Q92900 MTMR1-210ENST00000488357 1967 ntTSL 224.18■■□□□ 1.461e-6■■■■■ 26.9
UPF1Q92900 MTMR1-209ENST00000485376 2973 ntTSL 1 (best)23.4■■□□□ 1.341e-6■■■■■ 26.9
UPF1Q92900 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.13■□□□□ 0.331e-6■■■■■ 26.9
UPF1Q92900 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.054e-7■■■■■ 26.9
UPF1Q92900 RBM8A-208ENST00000634130 565 ntTSL 215.18■□□□□ 0.024e-7■■■■■ 26.9
UPF1Q92900 RBM8A-205ENST00000632040 495 ntTSL 214.73□□□□□ -0.054e-7■■■■■ 26.9
UPF1Q92900 RBM8A-204ENST00000583313 4961 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.384e-7■■■■■ 26.9
UPF1Q92900 RBM8A-207ENST00000633781 440 ntTSL 29.67□□□□□ -0.864e-7■■■■■ 26.9
UPF1Q92900 XPNPEP3-203ENST00000428799 2737 ntTSL 29.02□□□□□ -0.975e-11■■■■■ 26.9
UPF1Q92900 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.495e-11■■■■■ 26.9
UPF1Q92900 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.087e-7■■■■■ 26.9
UPF1Q92900 AC037459.1-201ENST00000450780 977 ntTSL 531.74■■■□□ 2.674e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.914e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC26.49■■□□□ 1.834e-7■■■■■ 26.8
UPF1Q92900 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC26.29■■□□□ 1.84e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.6■■□□□ 1.694e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.6■■□□□ 1.694e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC24.86■■□□□ 1.574e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.534e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.25■■□□□ 1.474e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.374e-7■■■■■ 26.8
UPF1Q92900 AC037459.1-203ENST00000447849 794 ntTSL 522.22■■□□□ 1.154e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-213ENST00000448520 894 ntTSL 320.36■□□□□ 0.854e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC17.58■□□□□ 0.44e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.9■□□□□ 0.144e-7■■■■■ 26.8
UPF1Q92900 PDLIM2-220ENST00000622226 6559 nt14.69□□□□□ -0.064e-7■■■■■ 26.8
UPF1Q92900 REEP6-204ENST00000591735 1026 ntTSL 231.04■■■□□ 2.566e-8■■■■■ 26.8
UPF1Q92900 FBXO31-204ENST00000565593 2717 ntTSL 519.14■□□□□ 0.651e-7■■■■■ 26.8
UPF1Q92900 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.621e-7■■■■■ 26.8
UPF1Q92900 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.287e-12■■■■■ 26.8
UPF1Q92900 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.277e-12■■■■■ 26.8
UPF1Q92900 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.477e-12■■■■■ 26.8
UPF1Q92900 GATAD2A-205ENST00000418032 3480 ntTSL 211.45□□□□□ -0.587e-12■■■■■ 26.8
UPF1Q92900 TMEM63B-203ENST00000371893 2921 ntTSL 1 (best)17■□□□□ 0.314e-7■■■■■ 26.8
UPF1Q92900 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.144e-7■■■■■ 26.8
UPF1Q92900 TMEM63B-209ENST00000533121 2465 ntTSL 1 (best)15.05■□□□□ 04e-7■■■■■ 26.8
UPF1Q92900 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.54e-7■■■■■ 26.8
UPF1Q92900 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21■□□□□ 0.953e-6■■■■■ 26.8
UPF1Q92900 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.835e-6■■■■■ 26.8
UPF1Q92900 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.75■□□□□ 0.753e-6■■■■■ 26.8
UPF1Q92900 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.523e-6■■■■■ 26.8
UPF1Q92900 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.193e-6■■■■■ 26.8
UPF1Q92900 CAMKK1-203ENST00000381769 3508 ntTSL 1 (best) BASIC10.23□□□□□ -0.775e-6■■■■■ 26.8
UPF1Q92900 DCTN5-203ENST00000563614 3405 nt7.62□□□□□ -1.198e-8■■■■■ 26.8
UPF1Q92900 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.383e-7■■■■■ 26.8
UPF1Q92900 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.151e-7■■■■■ 26.8
UPF1Q92900 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.381e-7■■■■■ 26.8
UPF1Q92900 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.381e-7■■■■■ 26.8
UPF1Q92900 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.381e-7■■■■■ 26.8
UPF1Q92900 PDCD11-201ENST00000369797 6453 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.612e-8■■■■■ 26.8
UPF1Q92900 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.9■□□□□ 0.786e-7■■■■■ 26.8
UPF1Q92900 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.053e-8■■■■■ 26.8
UPF1Q92900 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.051e-7■■■■■ 26.8
UPF1Q92900 FOXO1-203ENST00000636651 1773 ntTSL 514.83□□□□□ -0.031e-7■■■■■ 26.8
UPF1Q92900 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.194e-9■■■■■ 26.8
UPF1Q92900 SCARB2-221ENST00000640341 3403 ntTSL 514.59□□□□□ -0.078e-7■■■■■ 26.8
UPF1Q92900 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC29.55■■■□□ 2.322e-7■■■■■ 26.8
UPF1Q92900 ENSA-202ENST00000339643 633 ntTSL 2 BASIC15.48■□□□□ 0.072e-11■■■■□ 26.7
UPF1Q92900 ENSA-213ENST00000509582 716 ntTSL 312.66□□□□□ -0.382e-11■■■■□ 26.7
UPF1Q92900 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC23.47■■□□□ 1.352e-6■■■■□ 26.7
UPF1Q92900 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.582e-6■■■■□ 26.7
UPF1Q92900 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.6■□□□□ 0.572e-6■■■■□ 26.7
UPF1Q92900 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.11■□□□□ 0.172e-6■■■■□ 26.7
UPF1Q92900 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.062e-6■■■■□ 26.7
UPF1Q92900 POLR3D-204ENST00000518039 1202 ntTSL 231.08■■■□□ 2.571e-17■■■■□ 26.7
UPF1Q92900 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.831e-17■■■■□ 26.7
UPF1Q92900 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC21.93■■□□□ 1.14e-9■■■■□ 26.7
UPF1Q92900 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC28.96■■■□□ 2.233e-8■■■■□ 26.7
UPF1Q92900 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.033e-8■■■■□ 26.7
UPF1Q92900 CHTF8-201ENST00000306585 2561 ntBASIC13.08□□□□□ -0.323e-8■■■■□ 26.7
UPF1Q92900 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.14■□□□□ 0.816e-24■■■■□ 26.7
UPF1Q92900 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.21■□□□□ 0.995e-46■■■■□ 26.7
UPF1Q92900 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC8.95□□□□□ -0.984e-46■■■■□ 26.7
UPF1Q92900 SLC13A3-201ENST00000279027 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.477e-8■■■■□ 26.7
UPF1Q92900 SLC13A3-210ENST00000472148 3283 ntTSL 5 BASIC9.92□□□□□ -0.827e-8■■■■□ 26.7
Retrieved 100 of 15,879 protein–RNA pairs in 141 ms