RNA–Protein interactions for RNA: ENST00000640341.1

SCARB2-221, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 3,403 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-221ENST00000640341 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
SCARB2-221ENST00000640341 SHROOM4Q9ULL8 1493 aa25.83■■□□□ 1.72
SCARB2-221ENST00000640341 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.66
SCARB2-221ENST00000640341 DCAF8L2P0C7V8 631 aa25.2■■□□□ 1.63
SCARB2-221ENST00000640341 ZCCHC6Q5VYS8 1495 aaKnown RBP24.66■■□□□ 1.54
SCARB2-221ENST00000640341 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
SCARB2-221ENST00000640341 CCDC180Q9P1Z9 1646 aa24.37■■□□□ 1.49
SCARB2-221ENST00000640341 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
SCARB2-221ENST00000640341 PCGF6Q9BYE7 350 aa24.19■■□□□ 1.46
SCARB2-221ENST00000640341 LOC105371045A0A1W2PR82 267 aa24.02■■□□□ 1.44
SCARB2-221ENST00000640341 HRCP23327 699 aa23.98■■□□□ 1.43
SCARB2-221ENST00000640341 PPARGC1BQ86YN6 1023 aaKnown RBP23.81■■□□□ 1.4
SCARB2-221ENST00000640341 EHMT2Q96KQ7 1210 aa23.72■■□□□ 1.39
SCARB2-221ENST00000640341 FAM9AQ8IZU1 332 aaPredicted RBP23.64■■□□□ 1.38
SCARB2-221ENST00000640341 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
SCARB2-221ENST00000640341 TRIM41Q8WV44 630 aa23.49■■□□□ 1.35
SCARB2-221ENST00000640341 SCRIBQ14160 1630 aa23.46■■□□□ 1.35
SCARB2-221ENST00000640341 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
SCARB2-221ENST00000640341 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.33
SCARB2-221ENST00000640341 ABCC9O60706 1549 aa23.26■■□□□ 1.31
SCARB2-221ENST00000640341 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
SCARB2-221ENST00000640341 CECR2Q9BXF3 1484 aa23.03■■□□□ 1.28
SCARB2-221ENST00000640341 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
SCARB2-221ENST00000640341 MROH2BQ7Z745 1585 aa22.86■■□□□ 1.25
SCARB2-221ENST00000640341 ZEB1P37275 1124 aaPredicted RBP22.81■■□□□ 1.24
SCARB2-221ENST00000640341 WIZO95785 1651 aa22.72■■□□□ 1.23
SCARB2-221ENST00000640341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
SCARB2-221ENST00000640341 NACADO15069 1562 aa22.7■■□□□ 1.22
SCARB2-221ENST00000640341 CCER1Q8TC90 406 aaPredicted RBP22.63■■□□□ 1.21
SCARB2-221ENST00000640341 PABPN1Q86U42 306 aaKnown RBP eCLIP22.51■■□□□ 1.19
SCARB2-221ENST00000640341 UBTFP17480 764 aaKnown RBP22.48■■□□□ 1.19
SCARB2-221ENST00000640341 ABCC8Q09428 1581 aa22.45■■□□□ 1.18
SCARB2-221ENST00000640341 BAZ1AQ9NRL2 1556 aaPredicted RBP22.39■■□□□ 1.17
SCARB2-221ENST00000640341 CCDC88BA6NC98 1476 aa22.39■■□□□ 1.17
SCARB2-221ENST00000640341 RANGAP1P46060 587 aaPredicted RBP22.35■■□□□ 1.17
SCARB2-221ENST00000640341 SOGA1O94964 1423 aa22.33■■□□□ 1.16
SCARB2-221ENST00000640341 SCAF1Q9H7N4 1312 aaKnown RBP22.32■■□□□ 1.16
SCARB2-221ENST00000640341 CSRNP3Q8WYN3 585 aa22.25■■□□□ 1.15
SCARB2-221ENST00000640341 CEP162Q5TB80 1403 aa22.23■■□□□ 1.15
SCARB2-221ENST00000640341 RUSC2Q8N2Y8 1516 aa22.2■■□□□ 1.14
SCARB2-221ENST00000640341 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
SCARB2-221ENST00000640341 DIEXFQ68CQ4 756 aaKnown RBP22.16■■□□□ 1.14
SCARB2-221ENST00000640341 SMARCA4P51532 1647 aa22.16■■□□□ 1.14
SCARB2-221ENST00000640341 HNRNPUL2Q1KMD3 747 aaKnown RBP22.15■■□□□ 1.14
SCARB2-221ENST00000640341 SMARCA2P51531 1590 aa22.13■■□□□ 1.13
SCARB2-221ENST00000640341 EIF4G1Q04637 1599 aaKnown RBP22.13■■□□□ 1.13
SCARB2-221ENST00000640341 NEUROD1Q13562 356 aa22.06■■□□□ 1.12
SCARB2-221ENST00000640341 TNIKQ9UKE5 1360 aa22.05■■□□□ 1.12
SCARB2-221ENST00000640341 YTHDC1Q96MU7 727 aaKnown RBP22■■□□□ 1.11
SCARB2-221ENST00000640341 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
SCARB2-221ENST00000640341 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
SCARB2-221ENST00000640341 APLP2Q06481 763 aa21.98■■□□□ 1.11
SCARB2-221ENST00000640341 UNC13AQ9UPW8 1703 aa21.92■■□□□ 1.1
SCARB2-221ENST00000640341 GTF3C3Q9Y5Q9 886 aa21.92■■□□□ 1.1
SCARB2-221ENST00000640341 GOLGA3Q08378 1498 aa21.91■■□□□ 1.1
SCARB2-221ENST00000640341 CENPBP07199 599 aaPredicted RBP21.9■■□□□ 1.1
SCARB2-221ENST00000640341 EEA1Q15075 1411 aa21.88■■□□□ 1.09
SCARB2-221ENST00000640341 ZNF316A6NFI3 1004 aaPredicted RBP21.84■■□□□ 1.09
SCARB2-221ENST00000640341 CLIP1P30622 1438 aa21.82■■□□□ 1.08
SCARB2-221ENST00000640341 PELP1Q8IZL8 1130 aaKnown RBP21.76■■□□□ 1.07
SCARB2-221ENST00000640341 BICRAQ9NZM4 1560 aa21.75■■□□□ 1.07
SCARB2-221ENST00000640341 CEP164Q9UPV0 1460 aa21.74■■□□□ 1.07
SCARB2-221ENST00000640341 SYNJ1O43426 1573 aa21.74■■□□□ 1.07
SCARB2-221ENST00000640341 BAZ1BQ9UIG0 1483 aaKnown RBP21.72■■□□□ 1.07
SCARB2-221ENST00000640341 RAPGEF2Q9Y4G8 1499 aa21.7■■□□□ 1.06
SCARB2-221ENST00000640341 MIER1Q8N108 512 aa21.68■■□□□ 1.06
SCARB2-221ENST00000640341 ATAD2BQ9ULI0 1458 aa21.68■■□□□ 1.06
SCARB2-221ENST00000640341 ITGAEP38570 1179 aa21.64■■□□□ 1.06
SCARB2-221ENST00000640341 VPS8Q8N3P4 1428 aa21.61■■□□□ 1.05
SCARB2-221ENST00000640341 KANK4Q5T7N3 995 aaPredicted RBP21.53■■□□□ 1.04
SCARB2-221ENST00000640341 KIF21BO75037 1637 aa21.49■■□□□ 1.03
SCARB2-221ENST00000640341 PEG3Q9GZU2 1588 aa21.47■■□□□ 1.03
SCARB2-221ENST00000640341 ATP1B4Q9UN42 357 aaPredicted RBP21.42■■□□□ 1.02
SCARB2-221ENST00000640341 P3H3Q8IVL6 736 aa21.32■■□□□ 1
SCARB2-221ENST00000640341 TOP2BQ02880 1626 aa21.31■■□□□ 1
SCARB2-221ENST00000640341 DHX57Q6P158 1386 aaKnown RBP21.28■■□□□ 1
SCARB2-221ENST00000640341 ARAP1Q96P48 1450 aa21.28■■□□□ 1
SCARB2-221ENST00000640341 KIF27Q86VH2 1401 aa21.27■■□□□ 1
SCARB2-221ENST00000640341 PRXQ9BXM0 1461 aa21.24■□□□□ 0.99
SCARB2-221ENST00000640341 FAM50AQ14320 339 aaKnown RBP21.22■□□□□ 0.99
SCARB2-221ENST00000640341 CUX1P39880 1505 aa21.22■□□□□ 0.99
SCARB2-221ENST00000640341 CCNB3Q8WWL7 1395 aa21.16■□□□□ 0.98
SCARB2-221ENST00000640341 CUX2O14529 1486 aa21.13■□□□□ 0.97
SCARB2-221ENST00000640341 ERICH3Q5RHP9 1530 aa21.12■□□□□ 0.97
SCARB2-221ENST00000640341 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
SCARB2-221ENST00000640341 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
SCARB2-221ENST00000640341 ARHGAP35Q9NRY4 1499 aa21.1■□□□□ 0.97
SCARB2-221ENST00000640341 CLSPNQ9HAW4 1339 aa21.09■□□□□ 0.97
SCARB2-221ENST00000640341 HIRIP3Q9BW71 556 aaPredicted RBP21.08■□□□□ 0.97
SCARB2-221ENST00000640341 SIN3AQ96ST3 1273 aa21.07■□□□□ 0.96
SCARB2-221ENST00000640341 KCNH8Q96L42 1107 aa21.07■□□□□ 0.96
SCARB2-221ENST00000640341 RAB3GAP2Q9H2M9 1393 aa21.05■□□□□ 0.96
SCARB2-221ENST00000640341 IGF1RP08069 1367 aa21.04■□□□□ 0.96
SCARB2-221ENST00000640341 CFTRP13569 1480 aa21.04■□□□□ 0.96
SCARB2-221ENST00000640341 CARMIL1Q5VZK9 1371 aa21.03■□□□□ 0.96
SCARB2-221ENST00000640341 RRBP1Q9P2E9 1410 aaKnown RBP21.03■□□□□ 0.96
SCARB2-221ENST00000640341 DDX10Q13206 875 aaKnown RBP21■□□□□ 0.95
SCARB2-221ENST00000640341 HMGXB3Q12766 1538 aa20.98■□□□□ 0.95
SCARB2-221ENST00000640341 BCANQ96GW7 911 aa20.95■□□□□ 0.94
SCARB2-221ENST00000640341 SUPT16HQ9Y5B9 1047 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms