RNA–Protein interactions for RNA: ENST00000464275.5

PDLIM2-216, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2 BASIC

Gene PDLIM2, Length 1,995 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-216ENST00000464275 NISCHQ9Y2I1 1504 aa48.09■■■■■ 5.29
PDLIM2-216ENST00000464275 CCDC180Q9P1Z9 1646 aa41.78■■■■■ 4.28
PDLIM2-216ENST00000464275 ZCCHC6Q5VYS8 1495 aaKnown RBP40.49■■■■■ 4.07
PDLIM2-216ENST00000464275 DCAF1Q9Y4B6 1507 aa39.76■■■■□ 3.96
PDLIM2-216ENST00000464275 SHROOM4Q9ULL8 1493 aa39.55■■■■□ 3.92
PDLIM2-216ENST00000464275 DCAF8L2P0C7V8 631 aa39.52■■■■□ 3.92
PDLIM2-216ENST00000464275 MYO15BQ96JP2 1530 aa39.09■■■■□ 3.85
PDLIM2-216ENST00000464275 ABCC9O60706 1549 aa38.97■■■■□ 3.83
PDLIM2-216ENST00000464275 NACADO15069 1562 aa38.74■■■■□ 3.79
PDLIM2-216ENST00000464275 SCRIBQ14160 1630 aa38.46■■■■□ 3.75
PDLIM2-216ENST00000464275 RB1CC1Q8TDY2 1594 aa38.3■■■■□ 3.72
PDLIM2-216ENST00000464275 SUPT5HO00267 1087 aaKnown RBP38.3■■■■□ 3.72
PDLIM2-216ENST00000464275 UNC13AQ9UPW8 1703 aa37.71■■■■□ 3.63
PDLIM2-216ENST00000464275 RSF1Q96T23 1441 aaPredicted RBP37.46■■■■□ 3.59
PDLIM2-216ENST00000464275 CECR2Q9BXF3 1484 aa37.31■■■■□ 3.56
PDLIM2-216ENST00000464275 MROH2BQ7Z745 1585 aa37.17■■■■□ 3.54
PDLIM2-216ENST00000464275 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
PDLIM2-216ENST00000464275 BAZ1AQ9NRL2 1556 aaPredicted RBP37.1■■■■□ 3.53
PDLIM2-216ENST00000464275 WIZO95785 1651 aa36.97■■■■□ 3.51
PDLIM2-216ENST00000464275 CHIC1Q5VXU3 224 aa36.93■■■■□ 3.5
PDLIM2-216ENST00000464275 SMARCA4P51532 1647 aa36.91■■■■□ 3.5
PDLIM2-216ENST00000464275 PABPN1Q86U42 306 aaKnown RBP eCLIP36.82■■■■□ 3.49
PDLIM2-216ENST00000464275 TOP2AP11388 1531 aaKnown RBP36.55■■■■□ 3.44
PDLIM2-216ENST00000464275 PEG3Q9GZU2 1588 aa36.4■■■■□ 3.42
PDLIM2-216ENST00000464275 SMARCA2P51531 1590 aa36.24■■■■□ 3.39
PDLIM2-216ENST00000464275 CCDC88BA6NC98 1476 aa36.16■■■■□ 3.38
PDLIM2-216ENST00000464275 EIF4G1Q04637 1599 aaKnown RBP36.15■■■■□ 3.38
PDLIM2-216ENST00000464275 ATAD2BQ9ULI0 1458 aa36.11■■■■□ 3.37
PDLIM2-216ENST00000464275 TRIM41Q8WV44 630 aa35.98■■■■□ 3.35
PDLIM2-216ENST00000464275 BAZ1BQ9UIG0 1483 aaKnown RBP35.95■■■■□ 3.35
PDLIM2-216ENST00000464275 HMGXB3Q12766 1538 aa35.74■■■■□ 3.31
PDLIM2-216ENST00000464275 NCAPD3P42695 1498 aa35.7■■■■□ 3.31
PDLIM2-216ENST00000464275 ABCC8Q09428 1581 aa35.59■■■■□ 3.29
PDLIM2-216ENST00000464275 LOC105371045A0A1W2PR82 267 aa35.54■■■■□ 3.28
PDLIM2-216ENST00000464275 FAM9AQ8IZU1 332 aaPredicted RBP35.34■■■■□ 3.25
PDLIM2-216ENST00000464275 CC2D2AQ9P2K1 1620 aa35.34■■■■□ 3.25
PDLIM2-216ENST00000464275 WRNQ14191 1432 aaPredicted RBP eCLIP35.26■■■■□ 3.23
PDLIM2-216ENST00000464275 SYNJ1O43426 1573 aa35.15■■■■□ 3.22
PDLIM2-216ENST00000464275 PRDM2Q13029 1718 aa35.12■■■■□ 3.21
PDLIM2-216ENST00000464275 CFTRP13569 1480 aa35.06■■■■□ 3.2
PDLIM2-216ENST00000464275 EEA1Q15075 1411 aa35.03■■■■□ 3.2
PDLIM2-216ENST00000464275 SOGA1O94964 1423 aa34.98■■■■□ 3.19
PDLIM2-216ENST00000464275 TOP2BQ02880 1626 aa34.98■■■■□ 3.19
PDLIM2-216ENST00000464275 BIVM-ERCC5R4GMW8 1640 aa34.97■■■■□ 3.19
PDLIM2-216ENST00000464275 RUSC2Q8N2Y8 1516 aa34.84■■■■□ 3.17
PDLIM2-216ENST00000464275 CADPSQ9ULU8 1353 aa34.82■■■■□ 3.16
PDLIM2-216ENST00000464275 EHMT2Q96KQ7 1210 aa34.82■■■■□ 3.16
PDLIM2-216ENST00000464275 CSRNP3Q8WYN3 585 aa34.77■■■■□ 3.16
PDLIM2-216ENST00000464275 CUX1P39880 1505 aa34.73■■■■□ 3.15
PDLIM2-216ENST00000464275 KIF21BO75037 1637 aa34.61■■■■□ 3.13
PDLIM2-216ENST00000464275 GOLGA3Q08378 1498 aa34.58■■■■□ 3.13
PDLIM2-216ENST00000464275 TNIKQ9UKE5 1360 aa34.56■■■■□ 3.12
PDLIM2-216ENST00000464275 CEP164Q9UPV0 1460 aa34.53■■■■□ 3.12
PDLIM2-216ENST00000464275 LAMC3Q9Y6N6 1575 aa34.47■■■■□ 3.11
PDLIM2-216ENST00000464275 FANCD2Q9BXW9 1451 aa34.46■■■■□ 3.11
PDLIM2-216ENST00000464275 PCGF6Q9BYE7 350 aa34.45■■■■□ 3.11
PDLIM2-216ENST00000464275 CEP162Q5TB80 1403 aa34.4■■■■□ 3.1
PDLIM2-216ENST00000464275 NESP48681 1621 aa34.38■■■■□ 3.09
PDLIM2-216ENST00000464275 UBTFP17480 764 aaKnown RBP34.38■■■■□ 3.09
PDLIM2-216ENST00000464275 TRIM26Q12899 539 aaPredicted RBP34.34■■■■□ 3.09
PDLIM2-216ENST00000464275 KIF27Q86VH2 1401 aa34.32■■■■□ 3.08
PDLIM2-216ENST00000464275 HRCP23327 699 aa34.31■■■■□ 3.08
PDLIM2-216ENST00000464275 DNMBPQ6XZF7 1577 aa34.29■■■■□ 3.08
PDLIM2-216ENST00000464275 FGD5Q6ZNL6 1462 aa34.26■■■■□ 3.08
PDLIM2-216ENST00000464275 ERICH3Q5RHP9 1530 aa34.26■■■■□ 3.08
PDLIM2-216ENST00000464275 RAPGEF2Q9Y4G8 1499 aa34.25■■■■□ 3.07
PDLIM2-216ENST00000464275 PRXQ9BXM0 1461 aa34.22■■■■□ 3.07
PDLIM2-216ENST00000464275 DNAJC5BQ9UF47 199 aa34.18■■■■□ 3.06
PDLIM2-216ENST00000464275 TOPBP1Q92547 1522 aa34.17■■■■□ 3.06
PDLIM2-216ENST00000464275 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
PDLIM2-216ENST00000464275 CUX2O14529 1486 aa34.13■■■■□ 3.05
PDLIM2-216ENST00000464275 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
PDLIM2-216ENST00000464275 CLIP1P30622 1438 aa34.03■■■■□ 3.04
PDLIM2-216ENST00000464275 POLA1P09884 1462 aaPredicted RBP34.02■■■■□ 3.04
PDLIM2-216ENST00000464275 URB2Q14146 1524 aaKnown RBP34.01■■■■□ 3.04
PDLIM2-216ENST00000464275 ABCA10Q8WWZ4 1543 aa33.98■■■■□ 3.03
PDLIM2-216ENST00000464275 IGF1RP08069 1367 aa33.95■■■■□ 3.03
PDLIM2-216ENST00000464275 RAD54L2Q9Y4B4 1467 aa33.92■■■■□ 3.02
PDLIM2-216ENST00000464275 WDR97A6NE52 1622 aa33.92■■■■□ 3.02
PDLIM2-216ENST00000464275 PPARGC1BQ86YN6 1023 aaKnown RBP33.83■■■■□ 3.01
PDLIM2-216ENST00000464275 VPS8Q8N3P4 1428 aa33.81■■■■□ 3
PDLIM2-216ENST00000464275 CARMIL1Q5VZK9 1371 aa33.8■■■■□ 3
PDLIM2-216ENST00000464275 CUL7Q14999 1698 aa33.75■■■□□ 2.99
PDLIM2-216ENST00000464275 ABCA5Q8WWZ7 1642 aa33.7■■■□□ 2.99
PDLIM2-216ENST00000464275 MRC2Q9UBG0 1479 aa33.68■■■□□ 2.98
PDLIM2-216ENST00000464275 RANGAP1P46060 587 aaPredicted RBP33.66■■■□□ 2.98
PDLIM2-216ENST00000464275 TARBP1Q13395 1621 aaKnown RBP33.65■■■□□ 2.98
PDLIM2-216ENST00000464275 ARAP1Q96P48 1450 aa33.64■■■□□ 2.98
PDLIM2-216ENST00000464275 GAPVD1Q14C86 1478 aa33.55■■■□□ 2.96
PDLIM2-216ENST00000464275 ARHGAP35Q9NRY4 1499 aa33.54■■■□□ 2.96
PDLIM2-216ENST00000464275 CTTNBP2Q8WZ74 1663 aa33.52■■■□□ 2.96
PDLIM2-216ENST00000464275 TDRD9Q8NDG6 1382 aaKnown RBP33.51■■■□□ 2.96
PDLIM2-216ENST00000464275 WDR62O43379 1518 aa33.5■■■□□ 2.95
PDLIM2-216ENST00000464275 APLP2Q06481 763 aa33.49■■■□□ 2.95
PDLIM2-216ENST00000464275 PBRM1Q86U86 1689 aa33.46■■■□□ 2.95
PDLIM2-216ENST00000464275 TTBK1Q5TCY1 1321 aaPredicted RBP33.46■■■□□ 2.95
PDLIM2-216ENST00000464275 ERCC6Q03468 1493 aa33.36■■■□□ 2.93
PDLIM2-216ENST00000464275 IFT140Q96RY7 1462 aa33.35■■■□□ 2.93
PDLIM2-216ENST00000464275 THOC2Q8NI27 1593 aaKnown RBP33.33■■■□□ 2.93
PDLIM2-216ENST00000464275 ZEB1P37275 1124 aaPredicted RBP33.3■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms