RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
PDLIM2-213ENST00000448520 ABCC9O60706 1549 aa30.59■■■□□ 2.49
PDLIM2-213ENST00000448520 CCDC180Q9P1Z9 1646 aa30.57■■■□□ 2.48
PDLIM2-213ENST00000448520 RB1CC1Q8TDY2 1594 aa29.15■■■□□ 2.26
PDLIM2-213ENST00000448520 NACADO15069 1562 aa28.97■■■□□ 2.23
PDLIM2-213ENST00000448520 DCAF8L2P0C7V8 631 aa28.89■■■□□ 2.22
PDLIM2-213ENST00000448520 DNAJC5BQ9UF47 199 aa28.77■■■□□ 2.2
PDLIM2-213ENST00000448520 MYO15BQ96JP2 1530 aa28.59■■■□□ 2.17
PDLIM2-213ENST00000448520 PABPN1Q86U42 306 aaKnown RBP eCLIP28.54■■■□□ 2.16
PDLIM2-213ENST00000448520 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
PDLIM2-213ENST00000448520 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
PDLIM2-213ENST00000448520 ZCCHC6Q5VYS8 1495 aaKnown RBP28.21■■■□□ 2.11
PDLIM2-213ENST00000448520 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
PDLIM2-213ENST00000448520 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.06
PDLIM2-213ENST00000448520 SCRIBQ14160 1630 aa27.81■■■□□ 2.04
PDLIM2-213ENST00000448520 CC2D2AQ9P2K1 1620 aa27.63■■■□□ 2.01
PDLIM2-213ENST00000448520 CECR2Q9BXF3 1484 aa27.59■■■□□ 2.01
PDLIM2-213ENST00000448520 EIF4G1Q04637 1599 aaKnown RBP27.57■■■□□ 2
PDLIM2-213ENST00000448520 NCAPD3P42695 1498 aa26.77■■□□□ 1.88
PDLIM2-213ENST00000448520 ATAD2BQ9ULI0 1458 aa26.64■■□□□ 1.86
PDLIM2-213ENST00000448520 SMARCA2P51531 1590 aa26.58■■□□□ 1.85
PDLIM2-213ENST00000448520 SMARCA4P51532 1647 aa26.56■■□□□ 1.84
PDLIM2-213ENST00000448520 DNAJC5Q9H3Z4 198 aa26.52■■□□□ 1.84
PDLIM2-213ENST00000448520 HMGXB3Q12766 1538 aa26.5■■□□□ 1.83
PDLIM2-213ENST00000448520 BAZ1AQ9NRL2 1556 aaPredicted RBP26.47■■□□□ 1.83
PDLIM2-213ENST00000448520 ERCC6Q03468 1493 aa26.46■■□□□ 1.83
PDLIM2-213ENST00000448520 CUX2O14529 1486 aa26.43■■□□□ 1.82
PDLIM2-213ENST00000448520 BAZ1BQ9UIG0 1483 aaKnown RBP26.37■■□□□ 1.81
PDLIM2-213ENST00000448520 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.81
PDLIM2-213ENST00000448520 NESP48681 1621 aa26.25■■□□□ 1.79
PDLIM2-213ENST00000448520 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
PDLIM2-213ENST00000448520 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
PDLIM2-213ENST00000448520 PDS5BQ9NTI5 1447 aa26.05■■□□□ 1.76
PDLIM2-213ENST00000448520 CADPSQ9ULU8 1353 aa25.96■■□□□ 1.75
PDLIM2-213ENST00000448520 THOC2Q8NI27 1593 aaKnown RBP25.96■■□□□ 1.75
PDLIM2-213ENST00000448520 WIZO95785 1651 aa25.9■■□□□ 1.74
PDLIM2-213ENST00000448520 KIF21AQ7Z4S6 1674 aa25.88■■□□□ 1.73
PDLIM2-213ENST00000448520 MRC2Q9UBG0 1479 aa25.74■■□□□ 1.71
PDLIM2-213ENST00000448520 RSF1Q96T23 1441 aaPredicted RBP25.73■■□□□ 1.71
PDLIM2-213ENST00000448520 WDR62O43379 1518 aa25.65■■□□□ 1.7
PDLIM2-213ENST00000448520 CEP164Q9UPV0 1460 aa25.64■■□□□ 1.69
PDLIM2-213ENST00000448520 CFTRP13569 1480 aa25.63■■□□□ 1.69
PDLIM2-213ENST00000448520 FANCD2Q9BXW9 1451 aa25.61■■□□□ 1.69
PDLIM2-213ENST00000448520 TOP2AP11388 1531 aaKnown RBP25.59■■□□□ 1.69
PDLIM2-213ENST00000448520 URB2Q14146 1524 aaKnown RBP25.37■■□□□ 1.65
PDLIM2-213ENST00000448520 CCDC88BA6NC98 1476 aa25.34■■□□□ 1.65
PDLIM2-213ENST00000448520 OSCARQ8IYS5 282 aa25.33■■□□□ 1.65
PDLIM2-213ENST00000448520 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
PDLIM2-213ENST00000448520 TRIM41Q8WV44 630 aa25.28■■□□□ 1.64
PDLIM2-213ENST00000448520 ABCC8Q09428 1581 aa25.16■■□□□ 1.62
PDLIM2-213ENST00000448520 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
PDLIM2-213ENST00000448520 TOPBP1Q92547 1522 aa25.12■■□□□ 1.61
PDLIM2-213ENST00000448520 ZNF608Q9ULD9 1512 aaPredicted RBP25.06■■□□□ 1.6
PDLIM2-213ENST00000448520 DNMBPQ6XZF7 1577 aa25.01■■□□□ 1.59
PDLIM2-213ENST00000448520 EIF4G3O43432 1585 aaKnown RBP24.88■■□□□ 1.57
PDLIM2-213ENST00000448520 AQRO60306 1485 aaKnown RBP eCLIP24.87■■□□□ 1.57
PDLIM2-213ENST00000448520 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
PDLIM2-213ENST00000448520 POLA1P09884 1462 aaPredicted RBP24.85■■□□□ 1.57
PDLIM2-213ENST00000448520 RIMBP3CA6NJZ7 1639 aa24.83■■□□□ 1.56
PDLIM2-213ENST00000448520 RIMBP3BA6NNM3 1639 aa24.83■■□□□ 1.56
PDLIM2-213ENST00000448520 RIMBP3Q9UFD9 1639 aa24.83■■□□□ 1.56
PDLIM2-213ENST00000448520 SOGA1O94964 1423 aa24.81■■□□□ 1.56
PDLIM2-213ENST00000448520 FBLN2P98095 1184 aa24.77■■□□□ 1.56
PDLIM2-213ENST00000448520 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
PDLIM2-213ENST00000448520 RAD54L2Q9Y4B4 1467 aa24.76■■□□□ 1.55
PDLIM2-213ENST00000448520 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
PDLIM2-213ENST00000448520 CHD1O14646 1710 aa24.7■■□□□ 1.54
PDLIM2-213ENST00000448520 CYB5RLQ6IPT4 315 aa24.69■■□□□ 1.54
PDLIM2-213ENST00000448520 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
PDLIM2-213ENST00000448520 WDR97A6NE52 1622 aa24.67■■□□□ 1.54
PDLIM2-213ENST00000448520 CUX1P39880 1505 aa24.65■■□□□ 1.54
PDLIM2-213ENST00000448520 SUPT5HO00267 1087 aaKnown RBP24.62■■□□□ 1.53
PDLIM2-213ENST00000448520 CHMP7Q8WUX9 453 aaPredicted RBP24.62■■□□□ 1.53
PDLIM2-213ENST00000448520 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.53
PDLIM2-213ENST00000448520 GRIN2BQ13224 1484 aa24.57■■□□□ 1.52
PDLIM2-213ENST00000448520 MAGI1Q96QZ7 1491 aaPredicted RBP24.57■■□□□ 1.52
PDLIM2-213ENST00000448520 ARAP1Q96P48 1450 aa24.51■■□□□ 1.51
PDLIM2-213ENST00000448520 SYNJ2O15056 1496 aa24.48■■□□□ 1.51
PDLIM2-213ENST00000448520 SYNJ1O43426 1573 aa24.48■■□□□ 1.51
PDLIM2-213ENST00000448520 GAPVD1Q14C86 1478 aa24.48■■□□□ 1.51
PDLIM2-213ENST00000448520 CLASP1Q7Z460 1538 aa24.45■■□□□ 1.5
PDLIM2-213ENST00000448520 ABCA10Q8WWZ4 1543 aa24.44■■□□□ 1.5
PDLIM2-213ENST00000448520 TRHP20396 242 aaPredicted RBP24.43■■□□□ 1.5
PDLIM2-213ENST00000448520 WRNQ14191 1432 aaPredicted RBP eCLIP24.38■■□□□ 1.49
PDLIM2-213ENST00000448520 PBRM1Q86U86 1689 aa24.37■■□□□ 1.49
PDLIM2-213ENST00000448520 ABCA5Q8WWZ7 1642 aa24.33■■□□□ 1.49
PDLIM2-213ENST00000448520 TOP2BQ02880 1626 aa24.26■■□□□ 1.47
PDLIM2-213ENST00000448520 BIVM-ERCC5R4GMW8 1640 aa24.24■■□□□ 1.47
PDLIM2-213ENST00000448520 GRIN2AQ12879 1464 aa24.22■■□□□ 1.47
PDLIM2-213ENST00000448520 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
PDLIM2-213ENST00000448520 NUP160Q12769 1436 aa24.16■■□□□ 1.46
PDLIM2-213ENST00000448520 ADAMTS12P58397 1594 aa24.15■■□□□ 1.46
PDLIM2-213ENST00000448520 ERICH3Q5RHP9 1530 aa24.14■■□□□ 1.45
PDLIM2-213ENST00000448520 CEP170Q5SW79 1584 aa24.08■■□□□ 1.45
PDLIM2-213ENST00000448520 ERCC6L2Q5T890 1561 aa24.03■■□□□ 1.44
PDLIM2-213ENST00000448520 JPH4Q96JJ6 628 aa24.01■■□□□ 1.43
PDLIM2-213ENST00000448520 SHROOM2Q13796 1616 aa24.01■■□□□ 1.43
PDLIM2-213ENST00000448520 PRG4Q92954 1404 aaPredicted RBP23.94■■□□□ 1.42
PDLIM2-213ENST00000448520 IGF1RP08069 1367 aa23.87■■□□□ 1.41
PDLIM2-213ENST00000448520 KIF27Q86VH2 1401 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms