RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
PDLIM2-220ENST00000622226 PELP1Q8IZL8 1130 aaKnown RBP24.91■■□□□ 1.58
PDLIM2-220ENST00000622226 SUPT5HO00267 1087 aaKnown RBP24.49■■□□□ 1.51
PDLIM2-220ENST00000622226 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
PDLIM2-220ENST00000622226 ERICH6Q7L0X2 663 aa24.26■■□□□ 1.47
PDLIM2-220ENST00000622226 SHROOM4Q9ULL8 1493 aa23.8■■□□□ 1.4
PDLIM2-220ENST00000622226 CCER1Q8TC90 406 aaPredicted RBP23.77■■□□□ 1.4
PDLIM2-220ENST00000622226 TTBK1Q5TCY1 1321 aaPredicted RBP23.74■■□□□ 1.39
PDLIM2-220ENST00000622226 CENPBP07199 599 aaPredicted RBP23.73■■□□□ 1.39
PDLIM2-220ENST00000622226 MYT1Q01538 1121 aa23.72■■□□□ 1.39
PDLIM2-220ENST00000622226 PCGF6Q9BYE7 350 aa23.68■■□□□ 1.38
PDLIM2-220ENST00000622226 APLP2Q06481 763 aa23.56■■□□□ 1.36
PDLIM2-220ENST00000622226 YTHDC1Q96MU7 727 aaKnown RBP23.45■■□□□ 1.34
PDLIM2-220ENST00000622226 FAM9AQ8IZU1 332 aaPredicted RBP23.35■■□□□ 1.33
PDLIM2-220ENST00000622226 RANGAP1P46060 587 aaPredicted RBP23.33■■□□□ 1.32
PDLIM2-220ENST00000622226 NEFLP07196 543 aa23.25■■□□□ 1.31
PDLIM2-220ENST00000622226 ATP1B4Q9UN42 357 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-220ENST00000622226 ZEB1P37275 1124 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-220ENST00000622226 DAXXQ9UER7 740 aaPredicted RBP22.85■■□□□ 1.25
PDLIM2-220ENST00000622226 CHIC1Q5VXU3 224 aa22.61■■□□□ 1.21
PDLIM2-220ENST00000622226 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
PDLIM2-220ENST00000622226 MYT1LQ9UL68 1186 aa22.57■■□□□ 1.2
PDLIM2-220ENST00000622226 NISCHQ9Y2I1 1504 aa22.52■■□□□ 1.2
PDLIM2-220ENST00000622226 RTL5Q5HYW3 569 aaPredicted RBP22.46■■□□□ 1.19
PDLIM2-220ENST00000622226 CNGB1Q14028 1251 aaPredicted RBP22.43■■□□□ 1.18
PDLIM2-220ENST00000622226 POLR3GLQ9BT43 218 aa22.41■■□□□ 1.18
PDLIM2-220ENST00000622226 HRCP23327 699 aa22.37■■□□□ 1.17
PDLIM2-220ENST00000622226 TRIM41Q8WV44 630 aa22.37■■□□□ 1.17
PDLIM2-220ENST00000622226 UBTFP17480 764 aaKnown RBP22.35■■□□□ 1.17
PDLIM2-220ENST00000622226 ZNF316A6NFI3 1004 aaPredicted RBP22.31■■□□□ 1.16
PDLIM2-220ENST00000622226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
PDLIM2-220ENST00000622226 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
PDLIM2-220ENST00000622226 CLSPNQ9HAW4 1339 aa22.16■■□□□ 1.14
PDLIM2-220ENST00000622226 ITGAEP38570 1179 aa22.11■■□□□ 1.13
PDLIM2-220ENST00000622226 TRIM26Q12899 539 aaPredicted RBP22.11■■□□□ 1.13
PDLIM2-220ENST00000622226 BCANQ96GW7 911 aa22.07■■□□□ 1.12
PDLIM2-220ENST00000622226 GTF3C3Q9Y5Q9 886 aa21.9■■□□□ 1.1
PDLIM2-220ENST00000622226 EIF5BO60841 1220 aaKnown RBP21.9■■□□□ 1.1
PDLIM2-220ENST00000622226 DIEXFQ68CQ4 756 aaKnown RBP21.89■■□□□ 1.09
PDLIM2-220ENST00000622226 SLC4A1APQ9BWU0 796 aaKnown RBP21.85■■□□□ 1.09
PDLIM2-220ENST00000622226 PLPPR3Q6T4P5 718 aa21.7■■□□□ 1.06
PDLIM2-220ENST00000622226 CDK11AQ9UQ88 783 aaPredicted RBP21.69■■□□□ 1.06
PDLIM2-220ENST00000622226 BCL11AQ9H165 835 aa21.67■■□□□ 1.06
PDLIM2-220ENST00000622226 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
PDLIM2-220ENST00000622226 PABPN1Q86U42 306 aaKnown RBP eCLIP21.55■■□□□ 1.04
PDLIM2-220ENST00000622226 FBLN2P98095 1184 aa21.54■■□□□ 1.04
PDLIM2-220ENST00000622226 NPM2Q86SE8 214 aaKnown RBP21.49■■□□□ 1.03
PDLIM2-220ENST00000622226 ZBTB47Q9UFB7 747 aaPredicted RBP21.4■■□□□ 1.02
PDLIM2-220ENST00000622226 ANP32AP39687 249 aaKnown RBP21.39■■□□□ 1.01
PDLIM2-220ENST00000622226 GLIPR1L2Q4G1C9 344 aa21.39■■□□□ 1.01
PDLIM2-220ENST00000622226 NEUROD1Q13562 356 aa21.37■■□□□ 1.01
PDLIM2-220ENST00000622226 ANP32CO43423 234 aa21.29■■□□□ 1
PDLIM2-220ENST00000622226 CANXP27824 592 aaKnown RBP21.28■■□□□ 1
PDLIM2-220ENST00000622226 ACIN1Q9UKV3 1341 aaKnown RBP21.27■■□□□ 1
PDLIM2-220ENST00000622226 SLC24A1O60721 1099 aa21.26■□□□□ 0.99
PDLIM2-220ENST00000622226 ARXQ96QS3 562 aa21.24■□□□□ 0.99
PDLIM2-220ENST00000622226 NBR1Q14596 966 aa21.24■□□□□ 0.99
PDLIM2-220ENST00000622226 ABCC9O60706 1549 aa21.22■□□□□ 0.99
PDLIM2-220ENST00000622226 ARID3CA6NKF2 412 aa21.21■□□□□ 0.99
PDLIM2-220ENST00000622226 ANP32BQ92688 251 aaKnown RBP21.21■□□□□ 0.99
PDLIM2-220ENST00000622226 FAM50AQ14320 339 aaKnown RBP21.21■□□□□ 0.99
PDLIM2-220ENST00000622226 ZNF326Q5BKZ1 582 aaKnown RBP21.2■□□□□ 0.98
PDLIM2-220ENST00000622226 TRIM52Q96A61 297 aa21.19■□□□□ 0.98
PDLIM2-220ENST00000622226 FKBP8Q14318 412 aa21.09■□□□□ 0.97
PDLIM2-220ENST00000622226 HSP90AA1P07900 732 aaKnown RBP21.07■□□□□ 0.96
PDLIM2-220ENST00000622226 PLEKHG5O94827 1062 aa20.87■□□□□ 0.93
PDLIM2-220ENST00000622226 SENP3Q9H4L4 574 aaPredicted RBP20.87■□□□□ 0.93
PDLIM2-220ENST00000622226 UPF2Q9HAU5 1272 aaKnown RBP20.81■□□□□ 0.92
PDLIM2-220ENST00000622226 NEFMP07197 916 aa20.8■□□□□ 0.92
PDLIM2-220ENST00000622226 SALL2Q9Y467 1007 aaPredicted RBP20.78■□□□□ 0.92
PDLIM2-220ENST00000622226 P3H3Q8IVL6 736 aa20.77■□□□□ 0.92
PDLIM2-220ENST00000622226 A0A0G2JS52 829 aa20.76■□□□□ 0.91
PDLIM2-220ENST00000622226 SCAF1Q9H7N4 1312 aaKnown RBP20.76■□□□□ 0.91
PDLIM2-220ENST00000622226 ESF1Q9H501 851 aaKnown RBP20.74■□□□□ 0.91
PDLIM2-220ENST00000622226 HNRNPUQ00839 825 aaKnown RBP eCLIP20.74■□□□□ 0.91
PDLIM2-220ENST00000622226 RTN4Q9NQC3 1192 aaKnown RBP20.72■□□□□ 0.91
PDLIM2-220ENST00000622226 FAM9BQ8IZU0 186 aa20.7■□□□□ 0.9
PDLIM2-220ENST00000622226 IRX6P78412 446 aaPredicted RBP20.69■□□□□ 0.9
PDLIM2-220ENST00000622226 CCDC136Q96JN2 1154 aa20.68■□□□□ 0.9
PDLIM2-220ENST00000622226 ZNF777Q9ULD5 760 aaPredicted RBP20.68■□□□□ 0.9
PDLIM2-220ENST00000622226 CHGAP10645 457 aaKnown RBP20.61■□□□□ 0.89
PDLIM2-220ENST00000622226 TNNT2P45379 298 aaPredicted RBP20.61■□□□□ 0.89
PDLIM2-220ENST00000622226 TRIM44Q96DX7 344 aaPredicted RBP20.6■□□□□ 0.89
PDLIM2-220ENST00000622226 STAG3Q9UJ98 1225 aa20.6■□□□□ 0.89
PDLIM2-220ENST00000622226 AMER1Q5JTC6 1135 aaPredicted RBP20.59■□□□□ 0.89
PDLIM2-220ENST00000622226 DDX10Q13206 875 aaKnown RBP20.55■□□□□ 0.88
PDLIM2-220ENST00000622226 NAP1L5Q96NT1 182 aaPredicted RBP20.51■□□□□ 0.87
PDLIM2-220ENST00000622226 ZBTB7CA1YPR0 619 aa20.48■□□□□ 0.87
PDLIM2-220ENST00000622226 ANP32EQ9BTT0 268 aa20.48■□□□□ 0.87
PDLIM2-220ENST00000622226 CDK11BP21127 795 aaKnown RBP20.47■□□□□ 0.87
PDLIM2-220ENST00000622226 TPRNQ4KMQ1 711 aa20.46■□□□□ 0.87
PDLIM2-220ENST00000622226 DNTTIP2Q5QJE6 756 aaKnown RBP20.45■□□□□ 0.86
PDLIM2-220ENST00000622226 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.44■□□□□ 0.86
PDLIM2-220ENST00000622226 NPM1P06748 294 aaKnown RBP eCLIP20.43■□□□□ 0.86
PDLIM2-220ENST00000622226 NCLP19338 710 aaKnown RBP20.43■□□□□ 0.86
PDLIM2-220ENST00000622226 PTMAP06454 111 aaKnown RBP20.4■□□□□ 0.86
PDLIM2-220ENST00000622226 TMC1Q8TDI8 760 aa20.34■□□□□ 0.85
PDLIM2-220ENST00000622226 LAS1LQ9Y4W2 734 aaKnown RBP20.32■□□□□ 0.84
PDLIM2-220ENST00000622226 TRHP20396 242 aaPredicted RBP20.31■□□□□ 0.84
PDLIM2-220ENST00000622226 ERICH6BQ5W0A0 696 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 208.3 ms