RNA–Protein interactions for RNA: ENST00000409141.5

PDLIM2-206, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2 BASIC

Gene PDLIM2, Length 1,463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-206ENST00000409141 NISCHQ9Y2I1 1504 aa43.55■■■■■ 4.56
PDLIM2-206ENST00000409141 CCDC180Q9P1Z9 1646 aa38.67■■■■□ 3.78
PDLIM2-206ENST00000409141 ABCC9O60706 1549 aa38.04■■■■□ 3.68
PDLIM2-206ENST00000409141 DCAF8L2P0C7V8 631 aa36.6■■■■□ 3.45
PDLIM2-206ENST00000409141 RB1CC1Q8TDY2 1594 aa36.51■■■■□ 3.43
PDLIM2-206ENST00000409141 NACADO15069 1562 aa36.44■■■■□ 3.42
PDLIM2-206ENST00000409141 ZCCHC6Q5VYS8 1495 aaKnown RBP36.22■■■■□ 3.39
PDLIM2-206ENST00000409141 MYO15BQ96JP2 1530 aa36.16■■■■□ 3.38
PDLIM2-206ENST00000409141 DCAF1Q9Y4B6 1507 aa35.98■■■■□ 3.35
PDLIM2-206ENST00000409141 UNC13AQ9UPW8 1703 aa35.61■■■■□ 3.29
PDLIM2-206ENST00000409141 PABPN1Q86U42 306 aaKnown RBP eCLIP35.6■■■■□ 3.29
PDLIM2-206ENST00000409141 BICRAQ9NZM4 1560 aa35.38■■■■□ 3.25
PDLIM2-206ENST00000409141 SCRIBQ14160 1630 aa35.35■■■■□ 3.25
PDLIM2-206ENST00000409141 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
PDLIM2-206ENST00000409141 SHROOM4Q9ULL8 1493 aa34.98■■■■□ 3.19
PDLIM2-206ENST00000409141 EIF4G1Q04637 1599 aaKnown RBP34.47■■■■□ 3.11
PDLIM2-206ENST00000409141 CC2D2AQ9P2K1 1620 aa34.36■■■■□ 3.09
PDLIM2-206ENST00000409141 CECR2Q9BXF3 1484 aa34.18■■■■□ 3.06
PDLIM2-206ENST00000409141 SMARCA4P51532 1647 aa33.78■■■■□ 3
PDLIM2-206ENST00000409141 BAZ1AQ9NRL2 1556 aaPredicted RBP33.75■■■□□ 2.99
PDLIM2-206ENST00000409141 NCAPD3P42695 1498 aa33.65■■■□□ 2.98
PDLIM2-206ENST00000409141 ATAD2BQ9ULI0 1458 aa33.65■■■□□ 2.98
PDLIM2-206ENST00000409141 SMARCA2P51531 1590 aa33.6■■■□□ 2.97
PDLIM2-206ENST00000409141 MROH2BQ7Z745 1585 aa33.57■■■□□ 2.96
PDLIM2-206ENST00000409141 HMGXB3Q12766 1538 aa33.43■■■□□ 2.94
PDLIM2-206ENST00000409141 PEG3Q9GZU2 1588 aa33.43■■■□□ 2.94
PDLIM2-206ENST00000409141 BAZ1BQ9UIG0 1483 aaKnown RBP33.38■■■□□ 2.93
PDLIM2-206ENST00000409141 WIZO95785 1651 aa33.19■■■□□ 2.9
PDLIM2-206ENST00000409141 RSF1Q96T23 1441 aaPredicted RBP33.17■■■□□ 2.9
PDLIM2-206ENST00000409141 NESP48681 1621 aa32.89■■■□□ 2.86
PDLIM2-206ENST00000409141 TOP2AP11388 1531 aaKnown RBP32.82■■■□□ 2.84
PDLIM2-206ENST00000409141 ERCC6Q03468 1493 aa32.81■■■□□ 2.84
PDLIM2-206ENST00000409141 LAMC3Q9Y6N6 1575 aa32.74■■■□□ 2.83
PDLIM2-206ENST00000409141 CADPSQ9ULU8 1353 aa32.69■■■□□ 2.82
PDLIM2-206ENST00000409141 PDS5BQ9NTI5 1447 aa32.59■■■□□ 2.81
PDLIM2-206ENST00000409141 CCDC88BA6NC98 1476 aa32.48■■■□□ 2.79
PDLIM2-206ENST00000409141 CFTRP13569 1480 aa32.45■■■□□ 2.79
PDLIM2-206ENST00000409141 CUX2O14529 1486 aa32.44■■■□□ 2.78
PDLIM2-206ENST00000409141 KIF21AQ7Z4S6 1674 aa32.43■■■□□ 2.78
PDLIM2-206ENST00000409141 SUPT5HO00267 1087 aaKnown RBP32.39■■■□□ 2.78
PDLIM2-206ENST00000409141 THOC2Q8NI27 1593 aaKnown RBP32.33■■■□□ 2.77
PDLIM2-206ENST00000409141 FANCD2Q9BXW9 1451 aa32.3■■■□□ 2.76
PDLIM2-206ENST00000409141 CEP164Q9UPV0 1460 aa32.26■■■□□ 2.75
PDLIM2-206ENST00000409141 MRC2Q9UBG0 1479 aa32.23■■■□□ 2.75
PDLIM2-206ENST00000409141 PRDM2Q13029 1718 aa32.09■■■□□ 2.73
PDLIM2-206ENST00000409141 WDR62O43379 1518 aa32.09■■■□□ 2.73
PDLIM2-206ENST00000409141 URB2Q14146 1524 aaKnown RBP31.97■■■□□ 2.71
PDLIM2-206ENST00000409141 TOPBP1Q92547 1522 aa31.76■■■□□ 2.68
PDLIM2-206ENST00000409141 ABCC8Q09428 1581 aa31.76■■■□□ 2.68
PDLIM2-206ENST00000409141 DNMBPQ6XZF7 1577 aa31.69■■■□□ 2.66
PDLIM2-206ENST00000409141 DNAJC5Q9H3Z4 198 aa31.64■■■□□ 2.66
PDLIM2-206ENST00000409141 IFT140Q96RY7 1462 aa31.6■■■□□ 2.65
PDLIM2-206ENST00000409141 POLA1P09884 1462 aaPredicted RBP31.49■■■□□ 2.63
PDLIM2-206ENST00000409141 CUX1P39880 1505 aa31.48■■■□□ 2.63
PDLIM2-206ENST00000409141 ZNF608Q9ULD9 1512 aaPredicted RBP31.46■■■□□ 2.63
PDLIM2-206ENST00000409141 SOGA1O94964 1423 aa31.42■■■□□ 2.62
PDLIM2-206ENST00000409141 FGD5Q6ZNL6 1462 aa31.4■■■□□ 2.62
PDLIM2-206ENST00000409141 RAD54L2Q9Y4B4 1467 aa31.39■■■□□ 2.62
PDLIM2-206ENST00000409141 TARBP1Q13395 1621 aaKnown RBP31.39■■■□□ 2.62
PDLIM2-206ENST00000409141 AQRO60306 1485 aaKnown RBP eCLIP31.32■■■□□ 2.6
PDLIM2-206ENST00000409141 WRNQ14191 1432 aaPredicted RBP eCLIP31.29■■■□□ 2.6
PDLIM2-206ENST00000409141 EIF4G3O43432 1585 aaKnown RBP31.28■■■□□ 2.6
PDLIM2-206ENST00000409141 TDRD9Q8NDG6 1382 aaKnown RBP31.26■■■□□ 2.59
PDLIM2-206ENST00000409141 OSCARQ8IYS5 282 aa31.19■■■□□ 2.58
PDLIM2-206ENST00000409141 TOP2BQ02880 1626 aa31.18■■■□□ 2.58
PDLIM2-206ENST00000409141 SYNJ1O43426 1573 aa31.17■■■□□ 2.58
PDLIM2-206ENST00000409141 BIVM-ERCC5R4GMW8 1640 aa31.14■■■□□ 2.58
PDLIM2-206ENST00000409141 WDR97A6NE52 1622 aa31.11■■■□□ 2.57
PDLIM2-206ENST00000409141 ABCA10Q8WWZ4 1543 aa31.08■■■□□ 2.57
PDLIM2-206ENST00000409141 FBLN2P98095 1184 aa31.03■■■□□ 2.56
PDLIM2-206ENST00000409141 GRIN2BQ13224 1484 aa31.02■■■□□ 2.56
PDLIM2-206ENST00000409141 GAPVD1Q14C86 1478 aa31.02■■■□□ 2.56
PDLIM2-206ENST00000409141 SNAPC4Q5SXM2 1469 aa30.98■■■□□ 2.55
PDLIM2-206ENST00000409141 ABCA5Q8WWZ7 1642 aa30.93■■■□□ 2.54
PDLIM2-206ENST00000409141 MAGI1Q96QZ7 1491 aaPredicted RBP30.92■■■□□ 2.54
PDLIM2-206ENST00000409141 CHMP7Q8WUX9 453 aaPredicted RBP30.91■■■□□ 2.54
PDLIM2-206ENST00000409141 CHD1O14646 1710 aa30.9■■■□□ 2.54
PDLIM2-206ENST00000409141 PBRM1Q86U86 1689 aa30.87■■■□□ 2.53
PDLIM2-206ENST00000409141 SYNJ2O15056 1496 aa30.82■■■□□ 2.52
PDLIM2-206ENST00000409141 ERICH3Q5RHP9 1530 aa30.7■■■□□ 2.51
PDLIM2-206ENST00000409141 FHAD1B1AJZ9 1412 aa30.66■■■□□ 2.5
PDLIM2-206ENST00000409141 KIF27Q86VH2 1401 aa30.65■■■□□ 2.5
PDLIM2-206ENST00000409141 ADAMTS12P58397 1594 aa30.64■■■□□ 2.5
PDLIM2-206ENST00000409141 TRIM41Q8WV44 630 aa30.61■■■□□ 2.49
PDLIM2-206ENST00000409141 GRIN2AQ12879 1464 aa30.61■■■□□ 2.49
PDLIM2-206ENST00000409141 ARHGEF11O15085 1522 aa30.59■■■□□ 2.49
PDLIM2-206ENST00000409141 RIMBP3CA6NJZ7 1639 aa30.59■■■□□ 2.49
PDLIM2-206ENST00000409141 RIMBP3BA6NNM3 1639 aa30.59■■■□□ 2.49
PDLIM2-206ENST00000409141 RIMBP3Q9UFD9 1639 aa30.59■■■□□ 2.49
PDLIM2-206ENST00000409141 CLASP1Q7Z460 1538 aa30.57■■■□□ 2.48
PDLIM2-206ENST00000409141 IGF1RP08069 1367 aa30.55■■■□□ 2.48
PDLIM2-206ENST00000409141 NUP160Q12769 1436 aa30.46■■■□□ 2.47
PDLIM2-206ENST00000409141 CEP170Q5SW79 1584 aa30.44■■■□□ 2.46
PDLIM2-206ENST00000409141 CYB5RLQ6IPT4 315 aa30.42■■■□□ 2.46
PDLIM2-206ENST00000409141 CUL7Q14999 1698 aa30.39■■■□□ 2.45
PDLIM2-206ENST00000409141 CARMIL1Q5VZK9 1371 aa30.37■■■□□ 2.45
PDLIM2-206ENST00000409141 RUSC2Q8N2Y8 1516 aa30.35■■■□□ 2.45
PDLIM2-206ENST00000409141 ARAP1Q96P48 1450 aa30.34■■■□□ 2.45
PDLIM2-206ENST00000409141 JPH4Q96JJ6 628 aa30.25■■■□□ 2.43
PDLIM2-206ENST00000409141 SHROOM2Q13796 1616 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms