RNA–Protein interactions for RNA: ENST00000397760.8

PDLIM2-204, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-204ENST00000397760 NISCHQ9Y2I1 1504 aa44.33■■■■■ 4.69
PDLIM2-204ENST00000397760 CCDC180Q9P1Z9 1646 aa38.76■■■■□ 3.8
PDLIM2-204ENST00000397760 ZCCHC6Q5VYS8 1495 aaKnown RBP37.15■■■■□ 3.54
PDLIM2-204ENST00000397760 ABCC9O60706 1549 aa37.06■■■■□ 3.52
PDLIM2-204ENST00000397760 DCAF8L2P0C7V8 631 aa36.82■■■■□ 3.48
PDLIM2-204ENST00000397760 DCAF1Q9Y4B6 1507 aa36.65■■■■□ 3.46
PDLIM2-204ENST00000397760 MYO15BQ96JP2 1530 aa36.36■■■■□ 3.41
PDLIM2-204ENST00000397760 NACADO15069 1562 aa36.25■■■■□ 3.39
PDLIM2-204ENST00000397760 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
PDLIM2-204ENST00000397760 SHROOM4Q9ULL8 1493 aa35.93■■■■□ 3.34
PDLIM2-204ENST00000397760 SCRIBQ14160 1630 aa35.62■■■■□ 3.29
PDLIM2-204ENST00000397760 UNC13AQ9UPW8 1703 aa35.16■■■■□ 3.22
PDLIM2-204ENST00000397760 PABPN1Q86U42 306 aaKnown RBP eCLIP34.93■■■■□ 3.18
PDLIM2-204ENST00000397760 BICRAQ9NZM4 1560 aa34.91■■■■□ 3.18
PDLIM2-204ENST00000397760 CECR2Q9BXF3 1484 aa34.48■■■■□ 3.11
PDLIM2-204ENST00000397760 SUPT5HO00267 1087 aaKnown RBP34.42■■■■□ 3.1
PDLIM2-204ENST00000397760 RSF1Q96T23 1441 aaPredicted RBP34.27■■■■□ 3.08
PDLIM2-204ENST00000397760 BAZ1AQ9NRL2 1556 aaPredicted RBP34.26■■■■□ 3.07
PDLIM2-204ENST00000397760 MROH2BQ7Z745 1585 aa34.23■■■■□ 3.07
PDLIM2-204ENST00000397760 SMARCA4P51532 1647 aa34.12■■■■□ 3.05
PDLIM2-204ENST00000397760 EIF4G1Q04637 1599 aaKnown RBP33.91■■■■□ 3.02
PDLIM2-204ENST00000397760 WIZO95785 1651 aa33.89■■■■□ 3.02
PDLIM2-204ENST00000397760 PEG3Q9GZU2 1588 aa33.72■■■□□ 2.99
PDLIM2-204ENST00000397760 ATAD2BQ9ULI0 1458 aa33.7■■■□□ 2.99
PDLIM2-204ENST00000397760 SMARCA2P51531 1590 aa33.66■■■□□ 2.98
PDLIM2-204ENST00000397760 TOP2AP11388 1531 aaKnown RBP33.56■■■□□ 2.96
PDLIM2-204ENST00000397760 CC2D2AQ9P2K1 1620 aa33.49■■■□□ 2.95
PDLIM2-204ENST00000397760 NCAPD3P42695 1498 aa33.49■■■□□ 2.95
PDLIM2-204ENST00000397760 BAZ1BQ9UIG0 1483 aaKnown RBP33.49■■■□□ 2.95
PDLIM2-204ENST00000397760 HMGXB3Q12766 1538 aa33.36■■■□□ 2.93
PDLIM2-204ENST00000397760 CCDC88BA6NC98 1476 aa33.24■■■□□ 2.91
PDLIM2-204ENST00000397760 DNAJC5BQ9UF47 199 aa33.05■■■□□ 2.88
PDLIM2-204ENST00000397760 CHIC1Q5VXU3 224 aa32.75■■■□□ 2.83
PDLIM2-204ENST00000397760 CFTRP13569 1480 aa32.63■■■□□ 2.81
PDLIM2-204ENST00000397760 CADPSQ9ULU8 1353 aa32.62■■■□□ 2.81
PDLIM2-204ENST00000397760 NESP48681 1621 aa32.41■■■□□ 2.78
PDLIM2-204ENST00000397760 TRIM41Q8WV44 630 aa32.4■■■□□ 2.78
PDLIM2-204ENST00000397760 ABCC8Q09428 1581 aa32.38■■■□□ 2.77
PDLIM2-204ENST00000397760 LAMC3Q9Y6N6 1575 aa32.37■■■□□ 2.77
PDLIM2-204ENST00000397760 PRDM2Q13029 1718 aa32.3■■■□□ 2.76
PDLIM2-204ENST00000397760 WRNQ14191 1432 aaPredicted RBP eCLIP32.27■■■□□ 2.76
PDLIM2-204ENST00000397760 FANCD2Q9BXW9 1451 aa32.24■■■□□ 2.75
PDLIM2-204ENST00000397760 PDS5BQ9NTI5 1447 aa32.19■■■□□ 2.74
PDLIM2-204ENST00000397760 SYNJ1O43426 1573 aa32.1■■■□□ 2.73
PDLIM2-204ENST00000397760 CEP164Q9UPV0 1460 aa32.06■■■□□ 2.72
PDLIM2-204ENST00000397760 CUX1P39880 1505 aa32.03■■■□□ 2.72
PDLIM2-204ENST00000397760 TOP2BQ02880 1626 aa32.01■■■□□ 2.71
PDLIM2-204ENST00000397760 BIVM-ERCC5R4GMW8 1640 aa31.95■■■□□ 2.71
PDLIM2-204ENST00000397760 KIF21AQ7Z4S6 1674 aa31.94■■■□□ 2.7
PDLIM2-204ENST00000397760 DNMBPQ6XZF7 1577 aa31.85■■■□□ 2.69
PDLIM2-204ENST00000397760 URB2Q14146 1524 aaKnown RBP31.84■■■□□ 2.69
PDLIM2-204ENST00000397760 ERCC6Q03468 1493 aa31.83■■■□□ 2.69
PDLIM2-204ENST00000397760 TOPBP1Q92547 1522 aa31.83■■■□□ 2.69
PDLIM2-204ENST00000397760 FAM9AQ8IZU1 332 aaPredicted RBP31.79■■■□□ 2.68
PDLIM2-204ENST00000397760 MRC2Q9UBG0 1479 aa31.77■■■□□ 2.68
PDLIM2-204ENST00000397760 SOGA1O94964 1423 aa31.75■■■□□ 2.67
PDLIM2-204ENST00000397760 FGD5Q6ZNL6 1462 aa31.75■■■□□ 2.67
PDLIM2-204ENST00000397760 POLA1P09884 1462 aaPredicted RBP31.65■■■□□ 2.66
PDLIM2-204ENST00000397760 RUSC2Q8N2Y8 1516 aa31.63■■■□□ 2.65
PDLIM2-204ENST00000397760 EEA1Q15075 1411 aa31.62■■■□□ 2.65
PDLIM2-204ENST00000397760 WDR62O43379 1518 aa31.58■■■□□ 2.65
PDLIM2-204ENST00000397760 RAD54L2Q9Y4B4 1467 aa31.55■■■□□ 2.64
PDLIM2-204ENST00000397760 THOC2Q8NI27 1593 aaKnown RBP31.54■■■□□ 2.64
PDLIM2-204ENST00000397760 CSRNP3Q8WYN3 585 aa31.52■■■□□ 2.64
PDLIM2-204ENST00000397760 KIF27Q86VH2 1401 aa31.5■■■□□ 2.63
PDLIM2-204ENST00000397760 CUX2O14529 1486 aa31.49■■■□□ 2.63
PDLIM2-204ENST00000397760 LOC105371045A0A1W2PR82 267 aa31.49■■■□□ 2.63
PDLIM2-204ENST00000397760 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
PDLIM2-204ENST00000397760 EHMT2Q96KQ7 1210 aa31.35■■■□□ 2.61
PDLIM2-204ENST00000397760 TARBP1Q13395 1621 aaKnown RBP31.35■■■□□ 2.61
PDLIM2-204ENST00000397760 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
PDLIM2-204ENST00000397760 TDRD9Q8NDG6 1382 aaKnown RBP31.31■■■□□ 2.6
PDLIM2-204ENST00000397760 WDR97A6NE52 1622 aa31.31■■■□□ 2.6
PDLIM2-204ENST00000397760 IGF1RP08069 1367 aa31.27■■■□□ 2.6
PDLIM2-204ENST00000397760 GAPVD1Q14C86 1478 aa31.21■■■□□ 2.59
PDLIM2-204ENST00000397760 ABCA5Q8WWZ7 1642 aa31.18■■■□□ 2.58
PDLIM2-204ENST00000397760 PRXQ9BXM0 1461 aa31.17■■■□□ 2.58
PDLIM2-204ENST00000397760 KIF21BO75037 1637 aa31.17■■■□□ 2.58
PDLIM2-204ENST00000397760 AQRO60306 1485 aaKnown RBP eCLIP31.16■■■□□ 2.58
PDLIM2-204ENST00000397760 ZNF608Q9ULD9 1512 aaPredicted RBP31.16■■■□□ 2.58
PDLIM2-204ENST00000397760 GOLGA3Q08378 1498 aa31.16■■■□□ 2.58
PDLIM2-204ENST00000397760 CARMIL1Q5VZK9 1371 aa31.11■■■□□ 2.57
PDLIM2-204ENST00000397760 RAPGEF2Q9Y4G8 1499 aa31.11■■■□□ 2.57
PDLIM2-204ENST00000397760 UBTFP17480 764 aaKnown RBP31.09■■■□□ 2.57
PDLIM2-204ENST00000397760 ERICH3Q5RHP9 1530 aa31.08■■■□□ 2.57
PDLIM2-204ENST00000397760 GRIN2BQ13224 1484 aa31.02■■■□□ 2.56
PDLIM2-204ENST00000397760 TNIKQ9UKE5 1360 aa31■■■□□ 2.55
PDLIM2-204ENST00000397760 EIF4G3O43432 1585 aaKnown RBP31■■■□□ 2.55
PDLIM2-204ENST00000397760 CUL7Q14999 1698 aa30.98■■■□□ 2.55
PDLIM2-204ENST00000397760 PBRM1Q86U86 1689 aa30.96■■■□□ 2.55
PDLIM2-204ENST00000397760 FHAD1B1AJZ9 1412 aa30.88■■■□□ 2.53
PDLIM2-204ENST00000397760 SNAPC4Q5SXM2 1469 aa30.85■■■□□ 2.53
PDLIM2-204ENST00000397760 ADAMTS12P58397 1594 aa30.82■■■□□ 2.52
PDLIM2-204ENST00000397760 MAGI1Q96QZ7 1491 aaPredicted RBP30.79■■■□□ 2.52
PDLIM2-204ENST00000397760 CEP162Q5TB80 1403 aa30.79■■■□□ 2.52
PDLIM2-204ENST00000397760 RANGAP1P46060 587 aaPredicted RBP30.7■■■□□ 2.5
PDLIM2-204ENST00000397760 CHMP7Q8WUX9 453 aaPredicted RBP30.68■■■□□ 2.5
PDLIM2-204ENST00000397760 SYNJ2O15056 1496 aa30.68■■■□□ 2.5
PDLIM2-204ENST00000397760 CLIP1P30622 1438 aa30.66■■■□□ 2.5
PDLIM2-204ENST00000397760 FBLN2P98095 1184 aa30.64■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms