RNA–Protein interactions for RNA: ENST00000397761.6

PDLIM2-205, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PDLIM2, Length 1,491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-205ENST00000397761 NISCHQ9Y2I1 1504 aa45.23■■■■■ 4.83
PDLIM2-205ENST00000397761 CCDC180Q9P1Z9 1646 aa39.78■■■■□ 3.96
PDLIM2-205ENST00000397761 ZCCHC6Q5VYS8 1495 aaKnown RBP37.96■■■■□ 3.67
PDLIM2-205ENST00000397761 ABCC9O60706 1549 aa37.68■■■■□ 3.62
PDLIM2-205ENST00000397761 DCAF1Q9Y4B6 1507 aa37.53■■■■□ 3.6
PDLIM2-205ENST00000397761 MYO15BQ96JP2 1530 aa37.24■■■■□ 3.55
PDLIM2-205ENST00000397761 DCAF8L2P0C7V8 631 aa37.08■■■■□ 3.53
PDLIM2-205ENST00000397761 NACADO15069 1562 aa37.03■■■■□ 3.52
PDLIM2-205ENST00000397761 RB1CC1Q8TDY2 1594 aa36.77■■■■□ 3.48
PDLIM2-205ENST00000397761 SHROOM4Q9ULL8 1493 aa36.34■■■■□ 3.41
PDLIM2-205ENST00000397761 SCRIBQ14160 1630 aa36.31■■■■□ 3.4
PDLIM2-205ENST00000397761 UNC13AQ9UPW8 1703 aa36.14■■■■□ 3.38
PDLIM2-205ENST00000397761 BICRAQ9NZM4 1560 aa35.69■■■■□ 3.3
PDLIM2-205ENST00000397761 PABPN1Q86U42 306 aaKnown RBP eCLIP35.28■■■■□ 3.24
PDLIM2-205ENST00000397761 CECR2Q9BXF3 1484 aa35.09■■■■□ 3.21
PDLIM2-205ENST00000397761 BAZ1AQ9NRL2 1556 aaPredicted RBP34.97■■■■□ 3.19
PDLIM2-205ENST00000397761 RSF1Q96T23 1441 aaPredicted RBP34.9■■■■□ 3.18
PDLIM2-205ENST00000397761 MROH2BQ7Z745 1585 aa34.89■■■■□ 3.18
PDLIM2-205ENST00000397761 SMARCA4P51532 1647 aa34.88■■■■□ 3.17
PDLIM2-205ENST00000397761 SUPT5HO00267 1087 aaKnown RBP34.78■■■■□ 3.16
PDLIM2-205ENST00000397761 DNAJC5BQ9UF47 199 aa34.75■■■■□ 3.15
PDLIM2-205ENST00000397761 WIZO95785 1651 aa34.61■■■■□ 3.13
PDLIM2-205ENST00000397761 EIF4G1Q04637 1599 aaKnown RBP34.59■■■■□ 3.13
PDLIM2-205ENST00000397761 PEG3Q9GZU2 1588 aa34.55■■■■□ 3.12
PDLIM2-205ENST00000397761 SMARCA2P51531 1590 aa34.36■■■■□ 3.09
PDLIM2-205ENST00000397761 ATAD2BQ9ULI0 1458 aa34.33■■■■□ 3.09
PDLIM2-205ENST00000397761 TOP2AP11388 1531 aaKnown RBP34.28■■■■□ 3.08
PDLIM2-205ENST00000397761 CC2D2AQ9P2K1 1620 aa34.16■■■■□ 3.06
PDLIM2-205ENST00000397761 NCAPD3P42695 1498 aa34.13■■■■□ 3.05
PDLIM2-205ENST00000397761 HMGXB3Q12766 1538 aa34.12■■■■□ 3.05
PDLIM2-205ENST00000397761 BAZ1BQ9UIG0 1483 aaKnown RBP34.09■■■■□ 3.05
PDLIM2-205ENST00000397761 CCDC88BA6NC98 1476 aa33.84■■■■□ 3.01
PDLIM2-205ENST00000397761 PRDM2Q13029 1718 aa33.29■■■□□ 2.92
PDLIM2-205ENST00000397761 CFTRP13569 1480 aa33.27■■■□□ 2.92
PDLIM2-205ENST00000397761 CHIC1Q5VXU3 224 aa33.25■■■□□ 2.91
PDLIM2-205ENST00000397761 CADPSQ9ULU8 1353 aa33.16■■■□□ 2.9
PDLIM2-205ENST00000397761 LAMC3Q9Y6N6 1575 aa33.07■■■□□ 2.88
PDLIM2-205ENST00000397761 ABCC8Q09428 1581 aa32.99■■■□□ 2.87
PDLIM2-205ENST00000397761 NESP48681 1621 aa32.94■■■□□ 2.86
PDLIM2-205ENST00000397761 WRNQ14191 1432 aaPredicted RBP eCLIP32.84■■■□□ 2.85
PDLIM2-205ENST00000397761 TRIM41Q8WV44 630 aa32.8■■■□□ 2.84
PDLIM2-205ENST00000397761 FANCD2Q9BXW9 1451 aa32.79■■■□□ 2.84
PDLIM2-205ENST00000397761 SYNJ1O43426 1573 aa32.78■■■□□ 2.84
PDLIM2-205ENST00000397761 BIVM-ERCC5R4GMW8 1640 aa32.75■■■□□ 2.83
PDLIM2-205ENST00000397761 TOP2BQ02880 1626 aa32.72■■■□□ 2.83
PDLIM2-205ENST00000397761 PDS5BQ9NTI5 1447 aa32.71■■■□□ 2.83
PDLIM2-205ENST00000397761 KIF21AQ7Z4S6 1674 aa32.7■■■□□ 2.82
PDLIM2-205ENST00000397761 CUX1P39880 1505 aa32.66■■■□□ 2.82
PDLIM2-205ENST00000397761 CEP164Q9UPV0 1460 aa32.63■■■□□ 2.81
PDLIM2-205ENST00000397761 DNMBPQ6XZF7 1577 aa32.52■■■□□ 2.8
PDLIM2-205ENST00000397761 ERCC6Q03468 1493 aa32.5■■■□□ 2.79
PDLIM2-205ENST00000397761 TOPBP1Q92547 1522 aa32.44■■■□□ 2.78
PDLIM2-205ENST00000397761 URB2Q14146 1524 aaKnown RBP32.43■■■□□ 2.78
PDLIM2-205ENST00000397761 MRC2Q9UBG0 1479 aa32.35■■■□□ 2.77
PDLIM2-205ENST00000397761 FGD5Q6ZNL6 1462 aa32.32■■■□□ 2.77
PDLIM2-205ENST00000397761 CUX2O14529 1486 aa32.3■■■□□ 2.76
PDLIM2-205ENST00000397761 SOGA1O94964 1423 aa32.26■■■□□ 2.75
PDLIM2-205ENST00000397761 THOC2Q8NI27 1593 aaKnown RBP32.26■■■□□ 2.75
PDLIM2-205ENST00000397761 WDR62O43379 1518 aa32.25■■■□□ 2.75
PDLIM2-205ENST00000397761 EEA1Q15075 1411 aa32.25■■■□□ 2.75
PDLIM2-205ENST00000397761 POLA1P09884 1462 aaPredicted RBP32.23■■■□□ 2.75
PDLIM2-205ENST00000397761 RUSC2Q8N2Y8 1516 aa32.17■■■□□ 2.74
PDLIM2-205ENST00000397761 WDR97A6NE52 1622 aa32.14■■■□□ 2.74
PDLIM2-205ENST00000397761 ABCA10Q8WWZ4 1543 aa32.1■■■□□ 2.73
PDLIM2-205ENST00000397761 FAM9AQ8IZU1 332 aaPredicted RBP32.07■■■□□ 2.72
PDLIM2-205ENST00000397761 TARBP1Q13395 1621 aaKnown RBP32.06■■■□□ 2.72
PDLIM2-205ENST00000397761 RAD54L2Q9Y4B4 1467 aa32.05■■■□□ 2.72
PDLIM2-205ENST00000397761 KIF27Q86VH2 1401 aa32.04■■■□□ 2.72
PDLIM2-205ENST00000397761 CSRNP3Q8WYN3 585 aa31.97■■■□□ 2.71
PDLIM2-205ENST00000397761 ABCA5Q8WWZ7 1642 aa31.92■■■□□ 2.7
PDLIM2-205ENST00000397761 KIF21BO75037 1637 aa31.91■■■□□ 2.7
PDLIM2-205ENST00000397761 IFT140Q96RY7 1462 aa31.9■■■□□ 2.7
PDLIM2-205ENST00000397761 LOC105371045A0A1W2PR82 267 aa31.85■■■□□ 2.69
PDLIM2-205ENST00000397761 PRXQ9BXM0 1461 aa31.79■■■□□ 2.68
PDLIM2-205ENST00000397761 IGF1RP08069 1367 aa31.77■■■□□ 2.68
PDLIM2-205ENST00000397761 ERICH3Q5RHP9 1530 aa31.76■■■□□ 2.67
PDLIM2-205ENST00000397761 GAPVD1Q14C86 1478 aa31.75■■■□□ 2.67
PDLIM2-205ENST00000397761 GOLGA3Q08378 1498 aa31.73■■■□□ 2.67
PDLIM2-205ENST00000397761 TDRD9Q8NDG6 1382 aaKnown RBP31.73■■■□□ 2.67
PDLIM2-205ENST00000397761 PBRM1Q86U86 1689 aa31.73■■■□□ 2.67
PDLIM2-205ENST00000397761 CUL7Q14999 1698 aa31.71■■■□□ 2.67
PDLIM2-205ENST00000397761 ZNF608Q9ULD9 1512 aaPredicted RBP31.68■■■□□ 2.66
PDLIM2-205ENST00000397761 EIF4G3O43432 1585 aaKnown RBP31.66■■■□□ 2.66
PDLIM2-205ENST00000397761 RAPGEF2Q9Y4G8 1499 aa31.66■■■□□ 2.66
PDLIM2-205ENST00000397761 AQRO60306 1485 aaKnown RBP eCLIP31.62■■■□□ 2.65
PDLIM2-205ENST00000397761 CARMIL1Q5VZK9 1371 aa31.59■■■□□ 2.65
PDLIM2-205ENST00000397761 GRIN2BQ13224 1484 aa31.57■■■□□ 2.64
PDLIM2-205ENST00000397761 TNIKQ9UKE5 1360 aa31.56■■■□□ 2.64
PDLIM2-205ENST00000397761 EHMT2Q96KQ7 1210 aa31.52■■■□□ 2.64
PDLIM2-205ENST00000397761 ADAMTS12P58397 1594 aa31.5■■■□□ 2.63
PDLIM2-205ENST00000397761 DNAJC5Q9H3Z4 198 aa31.49■■■□□ 2.63
PDLIM2-205ENST00000397761 UBTFP17480 764 aaKnown RBP31.43■■■□□ 2.62
PDLIM2-205ENST00000397761 FHAD1B1AJZ9 1412 aa31.42■■■□□ 2.62
PDLIM2-205ENST00000397761 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
PDLIM2-205ENST00000397761 SNAPC4Q5SXM2 1469 aa31.37■■■□□ 2.61
PDLIM2-205ENST00000397761 CTTNBP2Q8WZ74 1663 aa31.35■■■□□ 2.61
PDLIM2-205ENST00000397761 CEP162Q5TB80 1403 aa31.33■■■□□ 2.61
PDLIM2-205ENST00000397761 SYNJ2O15056 1496 aa31.24■■■□□ 2.59
PDLIM2-205ENST00000397761 GRIN2AQ12879 1464 aa31.2■■■□□ 2.58
PDLIM2-205ENST00000397761 CLIP1P30622 1438 aa31.18■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms