RNA–Protein interactions for RNA: ENST00000443561.3

PDLIM2-212, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2 BASIC

Gene PDLIM2, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-212ENST00000443561 NISCHQ9Y2I1 1504 aa31.54■■■□□ 2.64
PDLIM2-212ENST00000443561 CCDC180Q9P1Z9 1646 aa28.04■■■□□ 2.08
PDLIM2-212ENST00000443561 ABCC9O60706 1549 aa27.27■■□□□ 1.96
PDLIM2-212ENST00000443561 ZCCHC6Q5VYS8 1495 aaKnown RBP26.35■■□□□ 1.81
PDLIM2-212ENST00000443561 NACADO15069 1562 aa26.24■■□□□ 1.79
PDLIM2-212ENST00000443561 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
PDLIM2-212ENST00000443561 MYO15BQ96JP2 1530 aa26.15■■□□□ 1.78
PDLIM2-212ENST00000443561 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
PDLIM2-212ENST00000443561 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
PDLIM2-212ENST00000443561 UNC13AQ9UPW8 1703 aa25.91■■□□□ 1.74
PDLIM2-212ENST00000443561 BICRAQ9NZM4 1560 aa25.64■■□□□ 1.69
PDLIM2-212ENST00000443561 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
PDLIM2-212ENST00000443561 PABPN1Q86U42 306 aaKnown RBP eCLIP25.44■■□□□ 1.66
PDLIM2-212ENST00000443561 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
PDLIM2-212ENST00000443561 DNAJC5BQ9UF47 199 aa25.01■■□□□ 1.59
PDLIM2-212ENST00000443561 EIF4G1Q04637 1599 aaKnown RBP24.84■■□□□ 1.57
PDLIM2-212ENST00000443561 CC2D2AQ9P2K1 1620 aa24.73■■□□□ 1.55
PDLIM2-212ENST00000443561 CECR2Q9BXF3 1484 aa24.63■■□□□ 1.53
PDLIM2-212ENST00000443561 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
PDLIM2-212ENST00000443561 BAZ1AQ9NRL2 1556 aaPredicted RBP24.39■■□□□ 1.5
PDLIM2-212ENST00000443561 MROH2BQ7Z745 1585 aa24.37■■□□□ 1.49
PDLIM2-212ENST00000443561 ATAD2BQ9ULI0 1458 aa24.28■■□□□ 1.48
PDLIM2-212ENST00000443561 PEG3Q9GZU2 1588 aa24.27■■□□□ 1.48
PDLIM2-212ENST00000443561 NCAPD3P42695 1498 aa24.22■■□□□ 1.47
PDLIM2-212ENST00000443561 SMARCA2P51531 1590 aa24.2■■□□□ 1.47
PDLIM2-212ENST00000443561 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
PDLIM2-212ENST00000443561 WIZO95785 1651 aa24.13■■□□□ 1.45
PDLIM2-212ENST00000443561 RSF1Q96T23 1441 aaPredicted RBP24.06■■□□□ 1.44
PDLIM2-212ENST00000443561 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
PDLIM2-212ENST00000443561 TOP2AP11388 1531 aaKnown RBP23.82■■□□□ 1.4
PDLIM2-212ENST00000443561 NESP48681 1621 aa23.7■■□□□ 1.39
PDLIM2-212ENST00000443561 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.37
PDLIM2-212ENST00000443561 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
PDLIM2-212ENST00000443561 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
PDLIM2-212ENST00000443561 CADPSQ9ULU8 1353 aa23.48■■□□□ 1.35
PDLIM2-212ENST00000443561 CFTRP13569 1480 aa23.43■■□□□ 1.34
PDLIM2-212ENST00000443561 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
PDLIM2-212ENST00000443561 PRDM2Q13029 1718 aa23.38■■□□□ 1.33
PDLIM2-212ENST00000443561 ERCC6Q03468 1493 aa23.37■■□□□ 1.33
PDLIM2-212ENST00000443561 SUPT5HO00267 1087 aaKnown RBP23.35■■□□□ 1.33
PDLIM2-212ENST00000443561 PDS5BQ9NTI5 1447 aa23.3■■□□□ 1.32
PDLIM2-212ENST00000443561 FANCD2Q9BXW9 1451 aa23.24■■□□□ 1.31
PDLIM2-212ENST00000443561 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
PDLIM2-212ENST00000443561 CUX2O14529 1486 aa23.17■■□□□ 1.3
PDLIM2-212ENST00000443561 MRC2Q9UBG0 1479 aa23.16■■□□□ 1.3
PDLIM2-212ENST00000443561 WDR62O43379 1518 aa23.15■■□□□ 1.3
PDLIM2-212ENST00000443561 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
PDLIM2-212ENST00000443561 DNAJC5Q9H3Z4 198 aa22.99■■□□□ 1.27
PDLIM2-212ENST00000443561 TOPBP1Q92547 1522 aa22.93■■□□□ 1.26
PDLIM2-212ENST00000443561 DNMBPQ6XZF7 1577 aa22.92■■□□□ 1.26
PDLIM2-212ENST00000443561 CUX1P39880 1505 aa22.85■■□□□ 1.25
PDLIM2-212ENST00000443561 ABCC8Q09428 1581 aa22.78■■□□□ 1.24
PDLIM2-212ENST00000443561 TARBP1Q13395 1621 aaKnown RBP22.75■■□□□ 1.23
PDLIM2-212ENST00000443561 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
PDLIM2-212ENST00000443561 SYNJ1O43426 1573 aa22.71■■□□□ 1.23
PDLIM2-212ENST00000443561 FGD5Q6ZNL6 1462 aa22.7■■□□□ 1.22
PDLIM2-212ENST00000443561 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
PDLIM2-212ENST00000443561 ZNF608Q9ULD9 1512 aaPredicted RBP22.69■■□□□ 1.22
PDLIM2-212ENST00000443561 IFT140Q96RY7 1462 aa22.69■■□□□ 1.22
PDLIM2-212ENST00000443561 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
PDLIM2-212ENST00000443561 RAD54L2Q9Y4B4 1467 aa22.66■■□□□ 1.22
PDLIM2-212ENST00000443561 TOP2BQ02880 1626 aa22.65■■□□□ 1.22
PDLIM2-212ENST00000443561 WRNQ14191 1432 aaPredicted RBP eCLIP22.62■■□□□ 1.21
PDLIM2-212ENST00000443561 EIF4G3O43432 1585 aaKnown RBP22.62■■□□□ 1.21
PDLIM2-212ENST00000443561 SOGA1O94964 1423 aa22.55■■□□□ 1.2
PDLIM2-212ENST00000443561 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
PDLIM2-212ENST00000443561 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
PDLIM2-212ENST00000443561 ABCA5Q8WWZ7 1642 aa22.46■■□□□ 1.19
PDLIM2-212ENST00000443561 TDRD9Q8NDG6 1382 aaKnown RBP22.44■■□□□ 1.18
PDLIM2-212ENST00000443561 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
PDLIM2-212ENST00000443561 CHD1O14646 1710 aa22.35■■□□□ 1.17
PDLIM2-212ENST00000443561 GAPVD1Q14C86 1478 aa22.33■■□□□ 1.16
PDLIM2-212ENST00000443561 SNAPC4Q5SXM2 1469 aa22.32■■□□□ 1.16
PDLIM2-212ENST00000443561 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
PDLIM2-212ENST00000443561 MAGI1Q96QZ7 1491 aaPredicted RBP22.25■■□□□ 1.15
PDLIM2-212ENST00000443561 ADAMTS12P58397 1594 aa22.22■■□□□ 1.15
PDLIM2-212ENST00000443561 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
PDLIM2-212ENST00000443561 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
PDLIM2-212ENST00000443561 RUSC2Q8N2Y8 1516 aa22.11■■□□□ 1.13
PDLIM2-212ENST00000443561 CLASP1Q7Z460 1538 aa22.1■■□□□ 1.13
PDLIM2-212ENST00000443561 OSCARQ8IYS5 282 aa22.08■■□□□ 1.13
PDLIM2-212ENST00000443561 KIF27Q86VH2 1401 aa22.07■■□□□ 1.12
PDLIM2-212ENST00000443561 GRIN2AQ12879 1464 aa22.06■■□□□ 1.12
PDLIM2-212ENST00000443561 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
PDLIM2-212ENST00000443561 CEP170Q5SW79 1584 aa22.04■■□□□ 1.12
PDLIM2-212ENST00000443561 IGF1RP08069 1367 aa22.04■■□□□ 1.12
PDLIM2-212ENST00000443561 CUL7Q14999 1698 aa22.03■■□□□ 1.12
PDLIM2-212ENST00000443561 FBLN2P98095 1184 aa22.02■■□□□ 1.12
PDLIM2-212ENST00000443561 NUP160Q12769 1436 aa21.98■■□□□ 1.11
PDLIM2-212ENST00000443561 CHMP7Q8WUX9 453 aaPredicted RBP21.98■■□□□ 1.11
PDLIM2-212ENST00000443561 TRIM41Q8WV44 630 aa21.98■■□□□ 1.11
PDLIM2-212ENST00000443561 RIMBP3CA6NJZ7 1639 aa21.97■■□□□ 1.11
PDLIM2-212ENST00000443561 RIMBP3BA6NNM3 1639 aa21.97■■□□□ 1.11
PDLIM2-212ENST00000443561 RIMBP3Q9UFD9 1639 aa21.97■■□□□ 1.11
PDLIM2-212ENST00000443561 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
PDLIM2-212ENST00000443561 ARHGEF11O15085 1522 aa21.93■■□□□ 1.1
PDLIM2-212ENST00000443561 SHROOM2Q13796 1616 aa21.89■■□□□ 1.09
PDLIM2-212ENST00000443561 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
PDLIM2-212ENST00000443561 ERCC6L2Q5T890 1561 aa21.85■■□□□ 1.09
PDLIM2-212ENST00000443561 ARAP1Q96P48 1450 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms