RNA–Protein interactions for RNA: ENST00000265810.8

PDLIM2-201, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 4,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-201ENST00000265810 NISCHQ9Y2I1 1504 aa28.63■■■□□ 2.17
PDLIM2-201ENST00000265810 DCAF8L2P0C7V8 631 aa26.75■■□□□ 1.87
PDLIM2-201ENST00000265810 SHROOM4Q9ULL8 1493 aa25.49■■□□□ 1.67
PDLIM2-201ENST00000265810 SUPT5HO00267 1087 aaKnown RBP25.18■■□□□ 1.62
PDLIM2-201ENST00000265810 ABCC9O60706 1549 aa24.4■■□□□ 1.5
PDLIM2-201ENST00000265810 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
PDLIM2-201ENST00000265810 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
PDLIM2-201ENST00000265810 EHMT2Q96KQ7 1210 aa23.72■■□□□ 1.39
PDLIM2-201ENST00000265810 PABPN1Q86U42 306 aaKnown RBP eCLIP23.7■■□□□ 1.38
PDLIM2-201ENST00000265810 FAM9AQ8IZU1 332 aaPredicted RBP23.54■■□□□ 1.36
PDLIM2-201ENST00000265810 TRIM41Q8WV44 630 aa23.44■■□□□ 1.34
PDLIM2-201ENST00000265810 SCRIBQ14160 1630 aa23.34■■□□□ 1.33
PDLIM2-201ENST00000265810 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
PDLIM2-201ENST00000265810 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.28
PDLIM2-201ENST00000265810 NACADO15069 1562 aa23.07■■□□□ 1.28
PDLIM2-201ENST00000265810 DCAF1Q9Y4B6 1507 aa23■■□□□ 1.27
PDLIM2-201ENST00000265810 RANGAP1P46060 587 aaPredicted RBP22.92■■□□□ 1.26
PDLIM2-201ENST00000265810 UBTFP17480 764 aaKnown RBP22.85■■□□□ 1.25
PDLIM2-201ENST00000265810 APLP2Q06481 763 aa22.83■■□□□ 1.25
PDLIM2-201ENST00000265810 TTBK1Q5TCY1 1321 aaPredicted RBP22.74■■□□□ 1.23
PDLIM2-201ENST00000265810 LOC105371045A0A1W2PR82 267 aa22.7■■□□□ 1.22
PDLIM2-201ENST00000265810 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
PDLIM2-201ENST00000265810 PCGF6Q9BYE7 350 aa22.56■■□□□ 1.2
PDLIM2-201ENST00000265810 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
PDLIM2-201ENST00000265810 ATP1B4Q9UN42 357 aaPredicted RBP22.5■■□□□ 1.19
PDLIM2-201ENST00000265810 CECR2Q9BXF3 1484 aa22.48■■□□□ 1.19
PDLIM2-201ENST00000265810 PPARGC1BQ86YN6 1023 aaKnown RBP22.38■■□□□ 1.17
PDLIM2-201ENST00000265810 BAZ1AQ9NRL2 1556 aaPredicted RBP22.3■■□□□ 1.16
PDLIM2-201ENST00000265810 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.14
PDLIM2-201ENST00000265810 BAZ1BQ9UIG0 1483 aaKnown RBP22.18■■□□□ 1.14
PDLIM2-201ENST00000265810 CSRNP3Q8WYN3 585 aa22.1■■□□□ 1.13
PDLIM2-201ENST00000265810 TRIM26Q12899 539 aaPredicted RBP22.01■■□□□ 1.11
PDLIM2-201ENST00000265810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
PDLIM2-201ENST00000265810 HNRNPUL2Q1KMD3 747 aaKnown RBP21.94■■□□□ 1.1
PDLIM2-201ENST00000265810 CCER1Q8TC90 406 aaPredicted RBP21.94■■□□□ 1.1
PDLIM2-201ENST00000265810 FBLN2P98095 1184 aa21.91■■□□□ 1.1
PDLIM2-201ENST00000265810 WIZO95785 1651 aa21.89■■□□□ 1.09
PDLIM2-201ENST00000265810 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
PDLIM2-201ENST00000265810 SMARCA2P51531 1590 aa21.83■■□□□ 1.09
PDLIM2-201ENST00000265810 ITGAEP38570 1179 aa21.81■■□□□ 1.08
PDLIM2-201ENST00000265810 WRNQ14191 1432 aaPredicted RBP eCLIP21.8■■□□□ 1.08
PDLIM2-201ENST00000265810 SMARCA4P51532 1647 aa21.78■■□□□ 1.08
PDLIM2-201ENST00000265810 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
PDLIM2-201ENST00000265810 P3H3Q8IVL6 736 aa21.74■■□□□ 1.07
PDLIM2-201ENST00000265810 TOP2AP11388 1531 aaKnown RBP21.71■■□□□ 1.07
PDLIM2-201ENST00000265810 ZEB1P37275 1124 aaPredicted RBP21.71■■□□□ 1.07
PDLIM2-201ENST00000265810 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
PDLIM2-201ENST00000265810 EEA1Q15075 1411 aa21.52■■□□□ 1.04
PDLIM2-201ENST00000265810 ARID3CA6NKF2 412 aa21.51■■□□□ 1.03
PDLIM2-201ENST00000265810 FAM50AQ14320 339 aaKnown RBP21.5■■□□□ 1.03
PDLIM2-201ENST00000265810 EIF4G1Q04637 1599 aaKnown RBP21.47■■□□□ 1.03
PDLIM2-201ENST00000265810 KIF27Q86VH2 1401 aa21.46■■□□□ 1.03
PDLIM2-201ENST00000265810 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
PDLIM2-201ENST00000265810 ERCC6Q03468 1493 aa21.45■■□□□ 1.03
PDLIM2-201ENST00000265810 SOGA1O94964 1423 aa21.45■■□□□ 1.02
PDLIM2-201ENST00000265810 BICRAQ9NZM4 1560 aa21.44■■□□□ 1.02
PDLIM2-201ENST00000265810 MYT1LQ9UL68 1186 aa21.43■■□□□ 1.02
PDLIM2-201ENST00000265810 CHMP7Q8WUX9 453 aaPredicted RBP21.41■■□□□ 1.02
PDLIM2-201ENST00000265810 HRCP23327 699 aa21.4■■□□□ 1.02
PDLIM2-201ENST00000265810 NCAPD3P42695 1498 aa21.39■■□□□ 1.01
PDLIM2-201ENST00000265810 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
PDLIM2-201ENST00000265810 PDS5BQ9NTI5 1447 aa21.36■■□□□ 1.01
PDLIM2-201ENST00000265810 CLIP1P30622 1438 aa21.35■■□□□ 1.01
PDLIM2-201ENST00000265810 CUX2O14529 1486 aa21.31■■□□□ 1
PDLIM2-201ENST00000265810 CEP164Q9UPV0 1460 aa21.29■■□□□ 1
PDLIM2-201ENST00000265810 CEP162Q5TB80 1403 aa21.29■■□□□ 1
PDLIM2-201ENST00000265810 TNIKQ9UKE5 1360 aa21.26■□□□□ 0.99
PDLIM2-201ENST00000265810 UNC13AQ9UPW8 1703 aa21.2■□□□□ 0.98
PDLIM2-201ENST00000265810 CARMIL1Q5VZK9 1371 aa21.2■□□□□ 0.98
PDLIM2-201ENST00000265810 CDK11AQ9UQ88 783 aaPredicted RBP21.19■□□□□ 0.98
PDLIM2-201ENST00000265810 TDRD9Q8NDG6 1382 aaKnown RBP21.18■□□□□ 0.98
PDLIM2-201ENST00000265810 FANCD2Q9BXW9 1451 aa21.16■□□□□ 0.98
PDLIM2-201ENST00000265810 CC2D2AQ9P2K1 1620 aa21.15■□□□□ 0.98
PDLIM2-201ENST00000265810 TRIM52Q96A61 297 aa21.14■□□□□ 0.97
PDLIM2-201ENST00000265810 ZNF777Q9ULD5 760 aaPredicted RBP21.11■□□□□ 0.97
PDLIM2-201ENST00000265810 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
PDLIM2-201ENST00000265810 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
PDLIM2-201ENST00000265810 MTUS2Q5JR59 1369 aa21.01■□□□□ 0.95
PDLIM2-201ENST00000265810 NEUROD1Q13562 356 aa21■□□□□ 0.95
PDLIM2-201ENST00000265810 DNAJC5BQ9UF47 199 aa20.99■□□□□ 0.95
PDLIM2-201ENST00000265810 CFTRP13569 1480 aa20.99■□□□□ 0.95
PDLIM2-201ENST00000265810 NESP48681 1621 aa20.96■□□□□ 0.95
PDLIM2-201ENST00000265810 NPM1P06748 294 aaKnown RBP eCLIP20.95■□□□□ 0.94
PDLIM2-201ENST00000265810 FGD5Q6ZNL6 1462 aa20.9■□□□□ 0.94
PDLIM2-201ENST00000265810 RAPGEF2Q9Y4G8 1499 aa20.9■□□□□ 0.94
PDLIM2-201ENST00000265810 CHIC2Q9UKJ5 165 aa20.87■□□□□ 0.93
PDLIM2-201ENST00000265810 RAD54L2Q9Y4B4 1467 aa20.86■□□□□ 0.93
PDLIM2-201ENST00000265810 PEG3Q9GZU2 1588 aa20.85■□□□□ 0.93
PDLIM2-201ENST00000265810 POLR3GLQ9BT43 218 aa20.83■□□□□ 0.93
PDLIM2-201ENST00000265810 PLEKHD1A6NEE1 506 aa20.82■□□□□ 0.92
PDLIM2-201ENST00000265810 KCNH8Q96L42 1107 aa20.8■□□□□ 0.92
PDLIM2-201ENST00000265810 IGF1RP08069 1367 aa20.79■□□□□ 0.92
PDLIM2-201ENST00000265810 SYNJ1O43426 1573 aa20.79■□□□□ 0.92
PDLIM2-201ENST00000265810 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
PDLIM2-201ENST00000265810 VPS8Q8N3P4 1428 aa20.78■□□□□ 0.92
PDLIM2-201ENST00000265810 YTHDC1Q96MU7 727 aaKnown RBP20.77■□□□□ 0.92
PDLIM2-201ENST00000265810 CENPBP07199 599 aaPredicted RBP20.73■□□□□ 0.91
PDLIM2-201ENST00000265810 GAPVD1Q14C86 1478 aa20.71■□□□□ 0.91
PDLIM2-201ENST00000265810 ZNF326Q5BKZ1 582 aaKnown RBP20.7■□□□□ 0.9
PDLIM2-201ENST00000265810 TSPY4P0CV99 314 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms