Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ARF5-206ENST00000489673 566 ntTSL 224.14■■□□□ 1.453e-9■■■□□ 18
YBX3P16989 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.653e-9■■■□□ 18
YBX3P16989 ARF5-202ENST00000415666 546 ntTSL 514.56□□□□□ -0.083e-9■■■□□ 18
YBX3P16989 PPP2R1A-208ENST00000473820 646 ntTSL 213.68□□□□□ -0.221e-9■■■□□ 18
YBX3P16989 LUC7L2-204ENST00000456182 2411 ntTSL 1 (best)20.57■□□□□ 0.881e-12■■■□□ 18
YBX3P16989 LUC7L2-209ENST00000608368 551 ntTSL 419.69■□□□□ 0.741e-12■■■□□ 18
YBX3P16989 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.671e-12■■■□□ 18
YBX3P16989 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.98■□□□□ 0.631e-12■■■□□ 18
YBX3P16989 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.67■□□□□ 0.421e-12■■■□□ 18
YBX3P16989 C7orf55-LUC7L2-201ENST00000541515 1661 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.751e-12■■■□□ 18
YBX3P16989 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.41□□□□□ -1.221e-12■■■□□ 18
YBX3P16989 LUC7L2-205ENST00000463912 2382 ntTSL 26.95□□□□□ -1.31e-12■■■□□ 18
YBX3P16989 LUC7L2-207ENST00000498518 2837 ntTSL 24.33□□□□□ -1.721e-12■■■□□ 18
YBX3P16989 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.262e-6■■■□□ 18
YBX3P16989 SEC24B-203ENST00000504968 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.292e-6■■■□□ 18
YBX3P16989 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.352e-6■■■□□ 18
YBX3P16989 RPL36-207ENST00000582463 239 ntTSL 526.8■■□□□ 1.881e-43■■■□□ 18
YBX3P16989 UGGT1-205ENST00000438277 3113 ntTSL 1 (best)12.98□□□□□ -0.339e-7■■■□□ 18
YBX3P16989 MACF1-209ENST00000462103 627 ntTSL 313.66□□□□□ -0.226e-8■■■□□ 18
YBX3P16989 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.491e-8■■■□□ 18
YBX3P16989 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.18■■■□□ 2.11e-8■■■□□ 18
YBX3P16989 MLST8-214ENST00000563179 564 ntTSL 415.86■□□□□ 0.135e-9■■■□□ 18
YBX3P16989 EIF1-207ENST00000591776 797 ntTSL 4 BASIC9.59□□□□□ -0.872e-21■■■□□ 18
YBX3P16989 PHF19-204ENST00000436309 558 ntTSL 416.23■□□□□ 0.193e-11■■■□□ 18
YBX3P16989 PAPOLA-216ENST00000555701 1875 ntTSL 211.69□□□□□ -0.541e-6■■■□□ 18
YBX3P16989 NDUFS8-209ENST00000526542 372 ntTSL 311.94□□□□□ -0.51e-13■■■□□ 18
YBX3P16989 SMAD2-208ENST00000587269 1042 ntTSL 339.57■■■■□ 3.931e-7■■■□□ 17.9
YBX3P16989 SMAD2-207ENST00000586514 828 ntTSL 521.61■■□□□ 1.051e-7■■■□□ 17.9
YBX3P16989 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.37■□□□□ 0.211e-7■■■□□ 17.9
YBX3P16989 SMAD2-205ENST00000586040 1971 ntTSL 5 BASIC12.44□□□□□ -0.421e-7■■■□□ 17.9
YBX3P16989 SMAD2-209ENST00000587353 584 ntTSL 35.96□□□□□ -1.461e-7■■■□□ 17.9
YBX3P16989 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC25.49■■□□□ 1.671e-6■■■□□ 17.9
YBX3P16989 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.611e-6■■■□□ 17.9
YBX3P16989 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.06■□□□□ 0.481e-6■■■□□ 17.9
YBX3P16989 CUTA-201ENST00000374484 658 ntTSL 318.01■□□□□ 0.471e-6■■■□□ 17.9
YBX3P16989 AFG3L2-204ENST00000591848 446 ntTSL 323.21■■□□□ 1.313e-6■■■□□ 17.9
YBX3P16989 ATP5G1-210ENST00000515060 433 ntTSL 317.15■□□□□ 0.341e-9■■■□□ 17.9
YBX3P16989 UBE3A-221ENST00000630607 1873 ntTSL 39.2□□□□□ -0.942e-10■■■□□ 17.9
YBX3P16989 UBE3A-210ENST00000626068 772 ntTSL 26.45□□□□□ -1.382e-10■■■□□ 17.9
YBX3P16989 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC16.19■□□□□ 0.182e-10■■■□□ 17.9
YBX3P16989 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.042e-10■■■□□ 17.9
YBX3P16989 TAGLN2-204ENST00000397334 801 ntTSL 523■■□□□ 1.272e-19■■■□□ 17.9
YBX3P16989 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.63■□□□□ 0.412e-19■■■□□ 17.9
YBX3P16989 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.412e-19■■■□□ 17.9
YBX3P16989 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.292e-19■■■□□ 17.9
YBX3P16989 TAGLN2-205ENST00000478033 1051 ntTSL 214.17□□□□□ -0.142e-19■■■□□ 17.9
YBX3P16989 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.015e-12■■■□□ 17.9
YBX3P16989 CCT3-206ENST00000368262 2048 ntTSL 214.38□□□□□ -0.115e-12■■■□□ 17.9
YBX3P16989 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC13.57□□□□□ -0.245e-12■■■□□ 17.9
YBX3P16989 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC13.49□□□□□ -0.255e-12■■■□□ 17.9
YBX3P16989 CCT3-203ENST00000368258 1885 ntTSL 212.61□□□□□ -0.395e-12■■■□□ 17.9
YBX3P16989 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.582e-8■■■□□ 17.9
YBX3P16989 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC15.76■□□□□ 0.112e-8■■■□□ 17.9
YBX3P16989 SF3B3-209ENST00000567635 630 ntTSL 59.19□□□□□ -0.942e-13■■■□□ 17.9
YBX3P16989 LSM4-202ENST00000593564 656 ntTSL 232.81■■■□□ 2.842e-10■■■□□ 17.9
YBX3P16989 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.9■■□□□ 1.423e-6■■■□□ 17.9
YBX3P16989 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.163e-6■■■□□ 17.9
YBX3P16989 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC33.35■■■□□ 2.934e-6■■■□□ 17.9
YBX3P16989 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.3■■■□□ 2.64e-6■■■□□ 17.9
YBX3P16989 RAD51-204ENST00000525066 1545 ntTSL 529.51■■■□□ 2.324e-6■■■□□ 17.9
YBX3P16989 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC22.53■■□□□ 1.24e-6■■■□□ 17.9
YBX3P16989 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.534e-6■■■□□ 17.9
YBX3P16989 RAD51-202ENST00000382643 1588 ntTSL 2 BASIC14.8□□□□□ -0.044e-6■■■□□ 17.9
YBX3P16989 RAD51-207ENST00000531277 658 ntTSL 312.23□□□□□ -0.454e-6■■■□□ 17.9
YBX3P16989 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.72□□□□□ -0.211e-9■■■□□ 17.9
YBX3P16989 CMTR1-201ENST00000373451 4033 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.587e-7■■■□□ 17.9
YBX3P16989 ARL8B-205ENST00000455168 1641 ntTSL 219.29■□□□□ 0.683e-12■■■□□ 17.9
YBX3P16989 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.273e-12■■■□□ 17.9
YBX3P16989 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.163e-12■■■□□ 17.9
YBX3P16989 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC14.58□□□□□ -0.083e-12■■■□□ 17.9
YBX3P16989 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.85■□□□□ 0.613e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-213ENST00000611549 4294 ntTSL 513.83□□□□□ -0.23e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-201ENST00000290101 3584 ntTSL 5 BASIC13.19□□□□□ -0.33e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-205ENST00000374763 3334 ntTSL 1 (best) BASIC12.04□□□□□ -0.483e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-206ENST00000374765 3271 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.493e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-209ENST00000471600 3238 ntTSL 511.8□□□□□ -0.523e-8■■■□□ 17.9
YBX3P16989 RAP1GAP-212ENST00000542643 3426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.663e-8■■■□□ 17.9
YBX3P16989 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.745e-8■■■□□ 17.9
YBX3P16989 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.325e-8■■■□□ 17.9
YBX3P16989 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.18□□□□□ -1.585e-8■■■□□ 17.9
YBX3P16989 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.188e-7■■■□□ 17.8
YBX3P16989 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC13.43□□□□□ -0.268e-7■■■□□ 17.8
YBX3P16989 TIMM50-215ENST00000601252 1737 ntTSL 515.68■□□□□ 0.12e-6■■■□□ 17.8
YBX3P16989 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.464e-7■■■□□ 17.8
YBX3P16989 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC13.83□□□□□ -0.24e-7■■■□□ 17.8
YBX3P16989 PYGL-205ENST00000532462 2711 ntTSL 1 (best) BASIC11.88□□□□□ -0.514e-7■■■□□ 17.8
YBX3P16989 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.585e-10■■■□□ 17.8
YBX3P16989 EIF4EBP1-202ENST00000520657 695 ntTSL 313.73□□□□□ -0.215e-10■■■□□ 17.8
YBX3P16989 SNU13-206ENST00000469028 736 ntTSL 514.18□□□□□ -0.146e-10■■■□□ 17.8
YBX3P16989 TSTA3-208ENST00000528920 964 ntTSL 518.98■□□□□ 0.633e-8■■■□□ 17.8
YBX3P16989 KDM4B-205ENST00000588337 504 ntTSL 535.95■■■■□ 3.352e-6■■■□□ 17.8
YBX3P16989 NME1-205ENST00000465188 521 ntTSL 210.49□□□□□ -0.732e-8■■■□□ 17.8
YBX3P16989 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.345e-7■■■□□ 17.8
YBX3P16989 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.09■□□□□ 0.975e-7■■■□□ 17.8
YBX3P16989 MMP17-205ENST00000535271 633 ntTSL 218.62■□□□□ 0.575e-7■■■□□ 17.8
YBX3P16989 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.45e-7■■■□□ 17.8
YBX3P16989 SMC3-202ENST00000462899 777 ntTSL 511.22□□□□□ -0.612e-10■■■□□ 17.8
YBX3P16989 TBPL1-202ENST00000367869 623 ntTSL 323.3■■□□□ 1.325e-8■■■□□ 17.8
YBX3P16989 TBPL1-205ENST00000457715 865 ntTSL 522.85■■□□□ 1.255e-8■■■□□ 17.8
YBX3P16989 TBPL1-204ENST00000416965 991 ntTSL 319.06■□□□□ 0.645e-8■■■□□ 17.8
Retrieved 100 of 29,075 protein–RNA pairs in 408.8 ms