RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 AEBP2Q6ZN18 517 aaPredicted RBP21.18■□□□□ 0.98
SMC3-202ENST00000462899 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
SMC3-202ENST00000462899 NISCHQ9Y2I1 1504 aa20.21■□□□□ 0.83
SMC3-202ENST00000462899 ABCC9O60706 1549 aa18.52■□□□□ 0.56
SMC3-202ENST00000462899 CCDC180Q9P1Z9 1646 aa18.38■□□□□ 0.53
SMC3-202ENST00000462899 PHF23Q9BUL5 403 aaPredicted RBP18.11■□□□□ 0.49
SMC3-202ENST00000462899 SENP3Q9H4L4 574 aaPredicted RBP17.88■□□□□ 0.45
SMC3-202ENST00000462899 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
SMC3-202ENST00000462899 RB1CC1Q8TDY2 1594 aa17.56■□□□□ 0.4
SMC3-202ENST00000462899 NACADO15069 1562 aa17.37■□□□□ 0.37
SMC3-202ENST00000462899 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
SMC3-202ENST00000462899 BICRAQ9NZM4 1560 aa17.15■□□□□ 0.34
SMC3-202ENST00000462899 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
SMC3-202ENST00000462899 MYO15BQ96JP2 1530 aa17.09■□□□□ 0.33
SMC3-202ENST00000462899 DCAF8L2P0C7V8 631 aa16.88■□□□□ 0.29
SMC3-202ENST00000462899 SHROOM4Q9ULL8 1493 aa16.86■□□□□ 0.29
SMC3-202ENST00000462899 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
SMC3-202ENST00000462899 DCAF1Q9Y4B6 1507 aa16.74■□□□□ 0.27
SMC3-202ENST00000462899 CECR2Q9BXF3 1484 aa16.73■□□□□ 0.27
SMC3-202ENST00000462899 ZCCHC6Q5VYS8 1495 aaKnown RBP16.71■□□□□ 0.27
SMC3-202ENST00000462899 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
SMC3-202ENST00000462899 FOXD1Q16676 465 aa16.68■□□□□ 0.26
SMC3-202ENST00000462899 PLPPR3Q6T4P5 718 aa16.62■□□□□ 0.25
SMC3-202ENST00000462899 SCRIBQ14160 1630 aa16.61■□□□□ 0.25
SMC3-202ENST00000462899 DNAJC5Q9H3Z4 198 aa16.46■□□□□ 0.23
SMC3-202ENST00000462899 CUX2O14529 1486 aa16.17■□□□□ 0.18
SMC3-202ENST00000462899 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
SMC3-202ENST00000462899 ADRA2BP18089 450 aa16.02■□□□□ 0.16
SMC3-202ENST00000462899 PPP6R1Q9UPN7 881 aa16.02■□□□□ 0.16
SMC3-202ENST00000462899 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
SMC3-202ENST00000462899 HMGXB3Q12766 1538 aa15.93■□□□□ 0.14
SMC3-202ENST00000462899 ATAD2BQ9ULI0 1458 aa15.92■□□□□ 0.14
SMC3-202ENST00000462899 THOC2Q8NI27 1593 aaKnown RBP15.88■□□□□ 0.13
SMC3-202ENST00000462899 SMARCA4P51532 1647 aa15.87■□□□□ 0.13
SMC3-202ENST00000462899 NESP48681 1621 aa15.86■□□□□ 0.13
SMC3-202ENST00000462899 SMARCA2P51531 1590 aa15.86■□□□□ 0.13
SMC3-202ENST00000462899 PEG3Q9GZU2 1588 aa15.77■□□□□ 0.11
SMC3-202ENST00000462899 LAMC3Q9Y6N6 1575 aa15.75■□□□□ 0.11
SMC3-202ENST00000462899 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
SMC3-202ENST00000462899 PIAS4Q8N2W9 510 aaPredicted RBP15.72■□□□□ 0.11
SMC3-202ENST00000462899 BAZ1BQ9UIG0 1483 aaKnown RBP15.71■□□□□ 0.1
SMC3-202ENST00000462899 BAZ1AQ9NRL2 1556 aaPredicted RBP15.7■□□□□ 0.1
SMC3-202ENST00000462899 PDS5BQ9NTI5 1447 aa15.56■□□□□ 0.08
SMC3-202ENST00000462899 MROH2BQ7Z745 1585 aa15.56■□□□□ 0.08
SMC3-202ENST00000462899 WDR62O43379 1518 aa15.54■□□□□ 0.08
SMC3-202ENST00000462899 MRC2Q9UBG0 1479 aa15.5■□□□□ 0.07
SMC3-202ENST00000462899 TRIM41Q8WV44 630 aa15.47■□□□□ 0.07
SMC3-202ENST00000462899 CADPSQ9ULU8 1353 aa15.47■□□□□ 0.07
SMC3-202ENST00000462899 WIZO95785 1651 aa15.38■□□□□ 0.05
SMC3-202ENST00000462899 CEP164Q9UPV0 1460 aa15.35■□□□□ 0.05
SMC3-202ENST00000462899 MSH5O43196 834 aa15.32■□□□□ 0.04
SMC3-202ENST00000462899 FANCD2Q9BXW9 1451 aa15.3■□□□□ 0.04
SMC3-202ENST00000462899 CFTRP13569 1480 aa15.27■□□□□ 0.04
SMC3-202ENST00000462899 URB2Q14146 1524 aaKnown RBP15.25■□□□□ 0.03
SMC3-202ENST00000462899 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
SMC3-202ENST00000462899 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
SMC3-202ENST00000462899 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
SMC3-202ENST00000462899 PRDM2Q13029 1718 aa15.24■□□□□ 0.03
SMC3-202ENST00000462899 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
SMC3-202ENST00000462899 TOP2AP11388 1531 aaKnown RBP15.16■□□□□ 0.02
SMC3-202ENST00000462899 ARHGEF11O15085 1522 aa15.13■□□□□ 0.01
SMC3-202ENST00000462899 ZNF608Q9ULD9 1512 aaPredicted RBP15.09■□□□□ 0.01
SMC3-202ENST00000462899 RSF1Q96T23 1441 aaPredicted RBP15.08■□□□□ 0
SMC3-202ENST00000462899 IFT140Q96RY7 1462 aa15.06■□□□□ 0
SMC3-202ENST00000462899 EIF4G3O43432 1585 aaKnown RBP15.05■□□□□ -0
SMC3-202ENST00000462899 CHD1O14646 1710 aa15.03■□□□□ -0
SMC3-202ENST00000462899 TOPBP1Q92547 1522 aa15.01□□□□□ -0.01
SMC3-202ENST00000462899 TARBP1Q13395 1621 aaKnown RBP14.98□□□□□ -0.01
SMC3-202ENST00000462899 ARAP1Q96P48 1450 aa14.96□□□□□ -0.01
SMC3-202ENST00000462899 DNMBPQ6XZF7 1577 aa14.95□□□□□ -0.02
SMC3-202ENST00000462899 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
SMC3-202ENST00000462899 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
SMC3-202ENST00000462899 CYB5RLQ6IPT4 315 aa14.86□□□□□ -0.03
SMC3-202ENST00000462899 AQRO60306 1485 aaKnown RBP eCLIP14.86□□□□□ -0.031e-6■■■■■ 28.7
SMC3-202ENST00000462899 CLASP1Q7Z460 1538 aa14.84□□□□□ -0.03
SMC3-202ENST00000462899 POLA1P09884 1462 aaPredicted RBP14.83□□□□□ -0.03
SMC3-202ENST00000462899 WDR97A6NE52 1622 aa14.81□□□□□ -0.04
SMC3-202ENST00000462899 RAD54L2Q9Y4B4 1467 aa14.75□□□□□ -0.05
SMC3-202ENST00000462899 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
SMC3-202ENST00000462899 SNAPC4Q5SXM2 1469 aa14.73□□□□□ -0.05
SMC3-202ENST00000462899 SYNJ1O43426 1573 aa14.73□□□□□ -0.05
SMC3-202ENST00000462899 MAGI1Q96QZ7 1491 aaPredicted RBP14.7□□□□□ -0.06
SMC3-202ENST00000462899 PPP4R3CPQ6ZMV5 832 aa14.68□□□□□ -0.06
SMC3-202ENST00000462899 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
SMC3-202ENST00000462899 FGD5Q6ZNL6 1462 aa14.68□□□□□ -0.06
SMC3-202ENST00000462899 SOGA1O94964 1423 aa14.67□□□□□ -0.06
SMC3-202ENST00000462899 PBRM1Q86U86 1689 aa14.67□□□□□ -0.06
SMC3-202ENST00000462899 FBLN2P98095 1184 aa14.66□□□□□ -0.06
SMC3-202ENST00000462899 CUX1P39880 1505 aa14.65□□□□□ -0.06
SMC3-202ENST00000462899 SYNJ2O15056 1496 aa14.64□□□□□ -0.07
SMC3-202ENST00000462899 GRIN2BQ13224 1484 aa14.63□□□□□ -0.07
SMC3-202ENST00000462899 GAPVD1Q14C86 1478 aa14.6□□□□□ -0.07
SMC3-202ENST00000462899 ABCA5Q8WWZ7 1642 aa14.59□□□□□ -0.07
SMC3-202ENST00000462899 MAPK8IP2Q13387 824 aaPredicted RBP14.57□□□□□ -0.08
SMC3-202ENST00000462899 ERCC6L2Q5T890 1561 aa14.56□□□□□ -0.08
SMC3-202ENST00000462899 CHMP7Q8WUX9 453 aaPredicted RBP14.55□□□□□ -0.08
SMC3-202ENST00000462899 KIF13AQ9H1H9 1805 aa14.53□□□□□ -0.08
SMC3-202ENST00000462899 ABCA10Q8WWZ4 1543 aa14.52□□□□□ -0.08
SMC3-202ENST00000462899 SHROOM2Q13796 1616 aa14.52□□□□□ -0.09
SMC3-202ENST00000462899 SCAF1Q9H7N4 1312 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms