RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 NISCHQ9Y2I1 1504 aa60■■■■■ 7.19
LSM4-202ENST00000593564 CCDC180Q9P1Z9 1646 aa53.8■■■■■ 6.2
LSM4-202ENST00000593564 ABCC9O60706 1549 aa53.74■■■■■ 6.19
LSM4-202ENST00000593564 RB1CC1Q8TDY2 1594 aa51.2■■■■■ 5.79
LSM4-202ENST00000593564 NACADO15069 1562 aa50.89■■■■■ 5.74
LSM4-202ENST00000593564 DCAF8L2P0C7V8 631 aa50.55■■■■■ 5.68
LSM4-202ENST00000593564 DNAJC5BQ9UF47 199 aa50.38■■■■■ 5.66
LSM4-202ENST00000593564 MYO15BQ96JP2 1530 aa50.24■■■■■ 5.63
LSM4-202ENST00000593564 PABPN1Q86U42 306 aaKnown RBP eCLIP50.04■■■■■ 5.6
LSM4-202ENST00000593564 UNC13AQ9UPW8 1703 aa49.96■■■■■ 5.59
LSM4-202ENST00000593564 ZCCHC6Q5VYS8 1495 aaKnown RBP49.75■■■■■ 5.55
LSM4-202ENST00000593564 BICRAQ9NZM4 1560 aa49.7■■■■■ 5.55
LSM4-202ENST00000593564 DCAF1Q9Y4B6 1507 aa49.6■■■■■ 5.53
LSM4-202ENST00000593564 SHROOM4Q9ULL8 1493 aa49.12■■■■■ 5.45
LSM4-202ENST00000593564 SCRIBQ14160 1630 aa48.99■■■■■ 5.43
LSM4-202ENST00000593564 CC2D2AQ9P2K1 1620 aa48.55■■■■■ 5.36
LSM4-202ENST00000593564 EIF4G1Q04637 1599 aaKnown RBP48.48■■■■■ 5.35
LSM4-202ENST00000593564 CECR2Q9BXF3 1484 aa48.43■■■■■ 5.34
LSM4-202ENST00000593564 NCAPD3P42695 1498 aa47■■■■■ 5.11
LSM4-202ENST00000593564 ATAD2BQ9ULI0 1458 aa46.84■■■■■ 5.09
LSM4-202ENST00000593564 SMARCA4P51532 1647 aa46.77■■■■■ 5.08
LSM4-202ENST00000593564 SMARCA2P51531 1590 aa46.71■■■■■ 5.07
LSM4-202ENST00000593564 HMGXB3Q12766 1538 aa46.64■■■■■ 5.06
LSM4-202ENST00000593564 BAZ1AQ9NRL2 1556 aaPredicted RBP46.57■■■■■ 5.05
LSM4-202ENST00000593564 ERCC6Q03468 1493 aa46.41■■■■■ 5.02
LSM4-202ENST00000593564 BAZ1BQ9UIG0 1483 aaKnown RBP46.37■■■■■ 5.01
LSM4-202ENST00000593564 CUX2O14529 1486 aa46.36■■■■■ 5.01
LSM4-202ENST00000593564 PEG3Q9GZU2 1588 aa46.35■■■■■ 5.01
LSM4-202ENST00000593564 DNAJC5Q9H3Z4 198 aa46.26■■■■■ 5
LSM4-202ENST00000593564 MROH2BQ7Z745 1585 aa46.21■■■■■ 4.99
LSM4-202ENST00000593564 NESP48681 1621 aa46.17■■■■■ 4.98
LSM4-202ENST00000593564 LAMC3Q9Y6N6 1575 aa45.89■■■■■ 4.94
LSM4-202ENST00000593564 THOC2Q8NI27 1593 aaKnown RBP45.71■■■■■ 4.91
LSM4-202ENST00000593564 PDS5BQ9NTI5 1447 aa45.65■■■■■ 4.9
LSM4-202ENST00000593564 WIZO95785 1651 aa45.62■■■■■ 4.89
LSM4-202ENST00000593564 CADPSQ9ULU8 1353 aa45.56■■■■■ 4.88
LSM4-202ENST00000593564 KIF21AQ7Z4S6 1674 aa45.54■■■■■ 4.88
LSM4-202ENST00000593564 RSF1Q96T23 1441 aaPredicted RBP45.29■■■■■ 4.84
LSM4-202ENST00000593564 MRC2Q9UBG0 1479 aa45.24■■■■■ 4.83
LSM4-202ENST00000593564 WDR62O43379 1518 aa45.13■■■■■ 4.82
LSM4-202ENST00000593564 TOP2AP11388 1531 aaKnown RBP45.11■■■■■ 4.81
LSM4-202ENST00000593564 CEP164Q9UPV0 1460 aa45.06■■■■■ 4.8
LSM4-202ENST00000593564 CFTRP13569 1480 aa45.05■■■■■ 4.8
LSM4-202ENST00000593564 FANCD2Q9BXW9 1451 aa45.02■■■■■ 4.8
LSM4-202ENST00000593564 URB2Q14146 1524 aaKnown RBP44.64■■■■■ 4.74
LSM4-202ENST00000593564 CCDC88BA6NC98 1476 aa44.58■■■■■ 4.73
LSM4-202ENST00000593564 PRDM2Q13029 1718 aa44.52■■■■■ 4.72
LSM4-202ENST00000593564 OSCARQ8IYS5 282 aa44.22■■■■■ 4.67
LSM4-202ENST00000593564 TRIM41Q8WV44 630 aa44.2■■■■■ 4.67
LSM4-202ENST00000593564 IFT140Q96RY7 1462 aa44.18■■■■■ 4.66
LSM4-202ENST00000593564 TOPBP1Q92547 1522 aa44.17■■■■■ 4.66
LSM4-202ENST00000593564 ABCC8Q09428 1581 aa44.11■■■■■ 4.65
LSM4-202ENST00000593564 ZNF608Q9ULD9 1512 aaPredicted RBP44.07■■■■■ 4.65
LSM4-202ENST00000593564 DNMBPQ6XZF7 1577 aa44.01■■■■■ 4.64
LSM4-202ENST00000593564 EIF4G3O43432 1585 aaKnown RBP43.82■■■■■ 4.61
LSM4-202ENST00000593564 TARBP1Q13395 1621 aaKnown RBP43.76■■■■■ 4.6
LSM4-202ENST00000593564 POLA1P09884 1462 aaPredicted RBP43.73■■■■■ 4.59
LSM4-202ENST00000593564 AQRO60306 1485 aaKnown RBP eCLIP43.68■■■■■ 4.587e-8■■□□□ 12.9
LSM4-202ENST00000593564 RIMBP3CA6NJZ7 1639 aa43.61■■■■■ 4.57
LSM4-202ENST00000593564 RIMBP3BA6NNM3 1639 aa43.61■■■■■ 4.57
LSM4-202ENST00000593564 RIMBP3Q9UFD9 1639 aa43.61■■■■■ 4.57
LSM4-202ENST00000593564 RAD54L2Q9Y4B4 1467 aa43.54■■■■■ 4.56
LSM4-202ENST00000593564 SOGA1O94964 1423 aa43.52■■■■■ 4.56
LSM4-202ENST00000593564 ARHGEF11O15085 1522 aa43.51■■■■■ 4.56
LSM4-202ENST00000593564 CHD1O14646 1710 aa43.45■■■■■ 4.55
LSM4-202ENST00000593564 FGD5Q6ZNL6 1462 aa43.45■■■■■ 4.55
LSM4-202ENST00000593564 TDRD9Q8NDG6 1382 aaKnown RBP43.42■■■■■ 4.54
LSM4-202ENST00000593564 CUX1P39880 1505 aa43.42■■■■■ 4.54
LSM4-202ENST00000593564 WDR97A6NE52 1622 aa43.37■■■■■ 4.53
LSM4-202ENST00000593564 FBLN2P98095 1184 aa43.36■■■■■ 4.53
LSM4-202ENST00000593564 SUPT5HO00267 1087 aaKnown RBP43.26■■■■■ 4.52
LSM4-202ENST00000593564 SNAPC4Q5SXM2 1469 aa43.25■■■■■ 4.51
LSM4-202ENST00000593564 CYB5RLQ6IPT4 315 aa43.16■■■■■ 4.5
LSM4-202ENST00000593564 MAGI1Q96QZ7 1491 aaPredicted RBP43.16■■■■■ 4.5
LSM4-202ENST00000593564 GRIN2BQ13224 1484 aa43.15■■■■■ 4.5
LSM4-202ENST00000593564 ARAP1Q96P48 1450 aa43.09■■■■■ 4.49
LSM4-202ENST00000593564 CHMP7Q8WUX9 453 aaPredicted RBP43.08■■■■■ 4.49
LSM4-202ENST00000593564 CLASP1Q7Z460 1538 aa43.02■■■■■ 4.48
LSM4-202ENST00000593564 SYNJ2O15056 1496 aa43■■■■■ 4.47
LSM4-202ENST00000593564 GAPVD1Q14C86 1478 aa43■■■■■ 4.47
LSM4-202ENST00000593564 SYNJ1O43426 1573 aa42.99■■■■■ 4.47
LSM4-202ENST00000593564 ABCA10Q8WWZ4 1543 aa42.98■■■■■ 4.47
LSM4-202ENST00000593564 PBRM1Q86U86 1689 aa42.92■■■■■ 4.46
LSM4-202ENST00000593564 ABCA5Q8WWZ7 1642 aa42.89■■■■■ 4.46
LSM4-202ENST00000593564 WRNQ14191 1432 aaPredicted RBP eCLIP42.82■■■■■ 4.45
LSM4-202ENST00000593564 TOP2BQ02880 1626 aa42.74■■■■■ 4.43
LSM4-202ENST00000593564 BIVM-ERCC5R4GMW8 1640 aa42.72■■■■■ 4.43
LSM4-202ENST00000593564 TRHP20396 242 aaPredicted RBP42.65■■■■■ 4.42
LSM4-202ENST00000593564 GRIN2AQ12879 1464 aa42.6■■■■■ 4.41
LSM4-202ENST00000593564 ADAMTS12P58397 1594 aa42.57■■■■■ 4.41
LSM4-202ENST00000593564 FHAD1B1AJZ9 1412 aa42.47■■■■■ 4.39
LSM4-202ENST00000593564 NUP160Q12769 1436 aa42.47■■■■■ 4.39
LSM4-202ENST00000593564 ERICH3Q5RHP9 1530 aa42.44■■■■■ 4.38
LSM4-202ENST00000593564 CEP170Q5SW79 1584 aa42.42■■■■■ 4.38
LSM4-202ENST00000593564 ERCC6L2Q5T890 1561 aa42.31■■■■■ 4.36
LSM4-202ENST00000593564 SHROOM2Q13796 1616 aa42.24■■■■■ 4.35
LSM4-202ENST00000593564 PRG4Q92954 1404 aaPredicted RBP42.03■■■■■ 4.32
LSM4-202ENST00000593564 JPH4Q96JJ6 628 aa42.01■■■■■ 4.32
LSM4-202ENST00000593564 RUSC2Q8N2Y8 1516 aa41.96■■■■■ 4.31
LSM4-202ENST00000593564 KIF27Q86VH2 1401 aa41.93■■■■■ 4.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms