RNA–Protein interactions for RNA: ENST00000294785.9

NCSTN-201, Transcript of nicastrin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NCSTN, Length 2,936 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCSTN-201ENST00000294785 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
NCSTN-201ENST00000294785 CCDC180Q9P1Z9 1646 aa24.39■■□□□ 1.49
NCSTN-201ENST00000294785 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
NCSTN-201ENST00000294785 SHROOM4Q9ULL8 1493 aa23.96■■□□□ 1.43
NCSTN-201ENST00000294785 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
NCSTN-201ENST00000294785 SUPT5HO00267 1087 aaKnown RBP23.53■■□□□ 1.36
NCSTN-201ENST00000294785 DCAF8L2P0C7V8 631 aa23.22■■□□□ 1.31
NCSTN-201ENST00000294785 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
NCSTN-201ENST00000294785 MYO15BQ96JP2 1530 aa22.92■■□□□ 1.26
NCSTN-201ENST00000294785 ABCC9O60706 1549 aa22.81■■□□□ 1.24
NCSTN-201ENST00000294785 SCRIBQ14160 1630 aa22.6■■□□□ 1.21
NCSTN-201ENST00000294785 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
NCSTN-201ENST00000294785 NACADO15069 1562 aa22.47■■□□□ 1.19
NCSTN-201ENST00000294785 HRCP23327 699 aa22.41■■□□□ 1.18
NCSTN-201ENST00000294785 RB1CC1Q8TDY2 1594 aa22.35■■□□□ 1.17
NCSTN-201ENST00000294785 PCGF6Q9BYE7 350 aa22.24■■□□□ 1.15
NCSTN-201ENST00000294785 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
NCSTN-201ENST00000294785 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
NCSTN-201ENST00000294785 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
NCSTN-201ENST00000294785 TRIM41Q8WV44 630 aa22.04■■□□□ 1.12
NCSTN-201ENST00000294785 TRIM26Q12899 539 aaPredicted RBP21.99■■□□□ 1.11
NCSTN-201ENST00000294785 WIZO95785 1651 aa21.96■■□□□ 1.11
NCSTN-201ENST00000294785 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
NCSTN-201ENST00000294785 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
NCSTN-201ENST00000294785 TOP2AP11388 1531 aaKnown RBP21.72■■□□□ 1.07
NCSTN-201ENST00000294785 UNC13AQ9UPW8 1703 aa21.72■■□□□ 1.07
NCSTN-201ENST00000294785 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
NCSTN-201ENST00000294785 PPARGC1BQ86YN6 1023 aaKnown RBP21.71■■□□□ 1.07
NCSTN-201ENST00000294785 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
NCSTN-201ENST00000294785 ZEB1P37275 1124 aaPredicted RBP21.62■■□□□ 1.05
NCSTN-201ENST00000294785 SMARCA2P51531 1590 aa21.56■■□□□ 1.04
NCSTN-201ENST00000294785 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.04
NCSTN-201ENST00000294785 ABCC8Q09428 1581 aa21.42■■□□□ 1.02
NCSTN-201ENST00000294785 PEG3Q9GZU2 1588 aa21.39■■□□□ 1.01
NCSTN-201ENST00000294785 BICRAQ9NZM4 1560 aa21.39■■□□□ 1.01
NCSTN-201ENST00000294785 EHMT2Q96KQ7 1210 aa21.35■■□□□ 1.01
NCSTN-201ENST00000294785 EEA1Q15075 1411 aa21.35■■□□□ 1.01
NCSTN-201ENST00000294785 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
NCSTN-201ENST00000294785 TNIKQ9UKE5 1360 aa21.22■□□□□ 0.99
NCSTN-201ENST00000294785 SOGA1O94964 1423 aa21.19■□□□□ 0.98
NCSTN-201ENST00000294785 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
NCSTN-201ENST00000294785 PABPN1Q86U42 306 aaKnown RBP eCLIP21.12■□□□□ 0.97
NCSTN-201ENST00000294785 CSRNP3Q8WYN3 585 aa21.12■□□□□ 0.97
NCSTN-201ENST00000294785 GOLGA3Q08378 1498 aa21.11■□□□□ 0.97
NCSTN-201ENST00000294785 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
NCSTN-201ENST00000294785 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
NCSTN-201ENST00000294785 KIF21BO75037 1637 aa21.04■□□□□ 0.96
NCSTN-201ENST00000294785 BAZ1BQ9UIG0 1483 aaKnown RBP21.04■□□□□ 0.96
NCSTN-201ENST00000294785 SYNJ1O43426 1573 aa21.03■□□□□ 0.96
NCSTN-201ENST00000294785 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
NCSTN-201ENST00000294785 UBTFP17480 764 aaKnown RBP20.95■□□□□ 0.94
NCSTN-201ENST00000294785 CCER1Q8TC90 406 aaPredicted RBP20.95■□□□□ 0.94
NCSTN-201ENST00000294785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.93■□□□□ 0.94
NCSTN-201ENST00000294785 TOP2BQ02880 1626 aa20.86■□□□□ 0.93
NCSTN-201ENST00000294785 BIVM-ERCC5R4GMW8 1640 aa20.83■□□□□ 0.92
NCSTN-201ENST00000294785 HMGXB3Q12766 1538 aa20.8■□□□□ 0.92
NCSTN-201ENST00000294785 CLIP1P30622 1438 aa20.8■□□□□ 0.92
NCSTN-201ENST00000294785 VPS8Q8N3P4 1428 aa20.76■□□□□ 0.91
NCSTN-201ENST00000294785 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
NCSTN-201ENST00000294785 RAPGEF2Q9Y4G8 1499 aa20.72■□□□□ 0.91
NCSTN-201ENST00000294785 TTBK1Q5TCY1 1321 aaPredicted RBP20.72■□□□□ 0.91
NCSTN-201ENST00000294785 ERICH3Q5RHP9 1530 aa20.71■□□□□ 0.91
NCSTN-201ENST00000294785 PRXQ9BXM0 1461 aa20.62■□□□□ 0.89
NCSTN-201ENST00000294785 DIEXFQ68CQ4 756 aaKnown RBP20.59■□□□□ 0.89
NCSTN-201ENST00000294785 APLP2Q06481 763 aa20.58■□□□□ 0.88
NCSTN-201ENST00000294785 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
NCSTN-201ENST00000294785 CUX1P39880 1505 aa20.56■□□□□ 0.88
NCSTN-201ENST00000294785 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
NCSTN-201ENST00000294785 CFTRP13569 1480 aa20.55■□□□□ 0.88
NCSTN-201ENST00000294785 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
NCSTN-201ENST00000294785 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
NCSTN-201ENST00000294785 ZNF316A6NFI3 1004 aaPredicted RBP20.47■□□□□ 0.87
NCSTN-201ENST00000294785 ACIN1Q9UKV3 1341 aaKnown RBP20.46■□□□□ 0.87
NCSTN-201ENST00000294785 HNRNPUL2Q1KMD3 747 aaKnown RBP20.44■□□□□ 0.86
NCSTN-201ENST00000294785 PELP1Q8IZL8 1130 aaKnown RBP20.42■□□□□ 0.86
NCSTN-201ENST00000294785 CENPBP07199 599 aaPredicted RBP20.41■□□□□ 0.86
NCSTN-201ENST00000294785 CLSPNQ9HAW4 1339 aa20.37■□□□□ 0.85
NCSTN-201ENST00000294785 NEUROD1Q13562 356 aa20.33■□□□□ 0.85
NCSTN-201ENST00000294785 RANGAP1P46060 587 aaPredicted RBP20.33■□□□□ 0.85
NCSTN-201ENST00000294785 RRBP1Q9P2E9 1410 aaKnown RBP20.31■□□□□ 0.84
NCSTN-201ENST00000294785 ARHGAP35Q9NRY4 1499 aa20.29■□□□□ 0.84
NCSTN-201ENST00000294785 CADPSQ9ULU8 1353 aa20.27■□□□□ 0.84
NCSTN-201ENST00000294785 CUX2O14529 1486 aa20.24■□□□□ 0.83
NCSTN-201ENST00000294785 MAP3K1Q13233 1512 aa20.23■□□□□ 0.83
NCSTN-201ENST00000294785 KANK4Q5T7N3 995 aaPredicted RBP20.22■□□□□ 0.83
NCSTN-201ENST00000294785 DHX57Q6P158 1386 aaKnown RBP20.22■□□□□ 0.83
NCSTN-201ENST00000294785 IGF1RP08069 1367 aa20.21■□□□□ 0.83
NCSTN-201ENST00000294785 FGD5Q6ZNL6 1462 aa20.18■□□□□ 0.82
NCSTN-201ENST00000294785 CCNB3Q8WWL7 1395 aa20.16■□□□□ 0.82
NCSTN-201ENST00000294785 TIAM1Q13009 1591 aa20.15■□□□□ 0.82
NCSTN-201ENST00000294785 GTF3C3Q9Y5Q9 886 aa20.14■□□□□ 0.82
NCSTN-201ENST00000294785 CARMIL1Q5VZK9 1371 aa20.13■□□□□ 0.81
NCSTN-201ENST00000294785 CC2D2AQ9P2K1 1620 aa20.12■□□□□ 0.81
NCSTN-201ENST00000294785 MIER1Q8N108 512 aa20.08■□□□□ 0.8
NCSTN-201ENST00000294785 DNMBPQ6XZF7 1577 aa20.07■□□□□ 0.8
NCSTN-201ENST00000294785 FANCD2Q9BXW9 1451 aa20.07■□□□□ 0.8
NCSTN-201ENST00000294785 FHAD1B1AJZ9 1412 aa20.07■□□□□ 0.8
NCSTN-201ENST00000294785 CFAP43Q8NDM7 1665 aa20.06■□□□□ 0.8
NCSTN-201ENST00000294785 LRRC9Q6ZRR7 1453 aa20.03■□□□□ 0.8
NCSTN-201ENST00000294785 ABCA10Q8WWZ4 1543 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms