Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 ARID4B-208ENST00000466653 2315 ntTSL 217.42■□□□□ 0.385e-7■■■■□ 25.9
XRN2Q9H0D6 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.53■□□□□ 0.085e-7■■■■□ 25.9
XRN2Q9H0D6 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.25e-7■■■■□ 25.9
XRN2Q9H0D6 ARID4B-205ENST00000421364 5151 ntTSL 1 (best)12.63□□□□□ -0.395e-7■■■■□ 25.9
XRN2Q9H0D6 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)11.26□□□□□ -0.615e-7■■■■□ 25.9
XRN2Q9H0D6 LINC-PINT-205ENST00000433079 1262 ntTSL 1 (best)20.87■□□□□ 0.931e-6■■■■□ 25.9
XRN2Q9H0D6 EHBP1L1-205ENST00000529099 490 ntTSL 524.31■■□□□ 1.486e-7■■■■□ 25.9
XRN2Q9H0D6 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.226e-7■■■■□ 25.9
XRN2Q9H0D6 MTG1-207ENST00000495014 871 ntTSL 322.25■■□□□ 1.156e-7■■■■□ 25.9
XRN2Q9H0D6 MTG1-208ENST00000498790 693 ntTSL 219.19■□□□□ 0.666e-7■■■■□ 25.9
XRN2Q9H0D6 ELL-204ENST00000596915 623 ntTSL 318.94■□□□□ 0.626e-7■■■■□ 25.9
XRN2Q9H0D6 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.076e-7■■■■□ 25.9
XRN2Q9H0D6 ELL-202ENST00000594635 4074 ntTSL 1 (best)14.39□□□□□ -0.116e-7■■■■□ 25.9
XRN2Q9H0D6 RAI1-204ENST00000489697 1570 ntTSL 318.07■□□□□ 0.485e-7■■■■□ 25.9
XRN2Q9H0D6 ZFHX2-AS1-203ENST00000556354 931 ntTSL 3 BASIC12.42□□□□□ -0.429e-7■■■■□ 25.9
XRN2Q9H0D6 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.191e-6■■■■□ 25.9
XRN2Q9H0D6 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.31e-6■■■■□ 25.9
XRN2Q9H0D6 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.593e-11■■■■□ 25.9
XRN2Q9H0D6 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.563e-11■■■■□ 25.9
XRN2Q9H0D6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.5■■□□□ 1.033e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC15.7■□□□□ 0.13e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.043e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC14.82□□□□□ -0.043e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC14.82□□□□□ -0.043e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC14.82□□□□□ -0.043e-7■■■■□ 25.9
XRN2Q9H0D6 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.073e-7■■■■□ 25.9
XRN2Q9H0D6 APLP2-220ENST00000533618 574 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-224ENST00000534582 556 ntTSL 525.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-213ENST00000529701 573 ntTSL 525.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-214ENST00000530132 542 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-209ENST00000527702 579 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-221ENST00000533713 560 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-223ENST00000534001 585 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-217ENST00000533195 560 ntTSL 425.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-208ENST00000526330 582 ntTSL 325.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-218ENST00000533532 584 ntTSL 225.41■■□□□ 1.664e-6■■■■□ 25.8
XRN2Q9H0D6 UBE2J2-209ENST00000461142 837 ntTSL 324.99■■□□□ 1.591e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-216ENST00000532456 664 ntTSL 423.54■■□□□ 1.364e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.97■■□□□ 1.274e-6■■■■□ 25.8
XRN2Q9H0D6 UBE2J2-216ENST00000488418 750 ntTSL 222.16■■□□□ 1.141e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-219ENST00000533616 2041 ntTSL 220.3■□□□□ 0.844e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-225ENST00000534761 551 ntTSL 520.23■□□□□ 0.834e-6■■■■□ 25.8
XRN2Q9H0D6 VAV2-204ENST00000472905 506 ntTSL 319.6■□□□□ 0.733e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.41■□□□□ 0.544e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-211ENST00000529235 537 ntTSL 417.62■□□□□ 0.414e-6■■■■□ 25.8
XRN2Q9H0D6 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC17.15■□□□□ 0.343e-7■■■■□ 25.8
XRN2Q9H0D6 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.274e-6■■■■□ 25.8
XRN2Q9H0D6 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.434e-6■■■■□ 25.8
XRN2Q9H0D6 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC9.69□□□□□ -0.865e-6■■■■□ 25.8
XRN2Q9H0D6 FLOT1-204ENST00000418160 457 ntTSL 318.05■□□□□ 0.482e-7■■■■□ 25.8
XRN2Q9H0D6 FLOT1-206ENST00000445853 792 ntTSL 1 (best)13.87□□□□□ -0.192e-7■■■■□ 25.8
XRN2Q9H0D6 EEF2-204ENST00000598182 581 ntTSL 216.19■□□□□ 0.187e-12■■■■□ 25.8
XRN2Q9H0D6 EEF2-205ENST00000598436 549 ntTSL 214.67□□□□□ -0.067e-12■■■■□ 25.8
XRN2Q9H0D6 AKNA-209ENST00000492875 3894 ntTSL 212.81□□□□□ -0.364e-6■■■■□ 25.8
XRN2Q9H0D6 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.57e-12■■■■□ 25.8
XRN2Q9H0D6 TPM4-215ENST00000592138 635 ntTSL 211.18□□□□□ -0.624e-6■■■■□ 25.8
XRN2Q9H0D6 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.252e-6■■■■□ 25.8
XRN2Q9H0D6 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.282e-6■■■■□ 25.8
XRN2Q9H0D6 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC33.87■■■■□ 3.018e-15■■■■□ 25.8
XRN2Q9H0D6 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC33.65■■■□□ 2.988e-15■■■■□ 25.8
XRN2Q9H0D6 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.623e-11■■■■□ 25.8
XRN2Q9H0D6 ZFHX2-AS1-202ENST00000554403 2524 ntTSL 214.21□□□□□ -0.131e-6■■■■□ 25.8
XRN2Q9H0D6 ZFHX2-AS1-201ENST00000553985 2322 ntTSL 2 BASIC12.31□□□□□ -0.441e-6■■■■□ 25.8
XRN2Q9H0D6 BICRAL-203ENST00000614467 6510 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.51e-6■■■■□ 25.7
XRN2Q9H0D6 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.541e-6■■■■□ 25.7
XRN2Q9H0D6 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.71■□□□□ 0.432e-6■■■■□ 25.7
XRN2Q9H0D6 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -11e-6■■■■□ 25.7
XRN2Q9H0D6 NCOR2-223ENST00000542565 746 ntTSL 324.07■■□□□ 1.441e-6■■■■□ 25.7
XRN2Q9H0D6 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.232e-6■■■■□ 25.7
XRN2Q9H0D6 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.17■□□□□ 0.182e-6■■■■□ 25.7
XRN2Q9H0D6 YTHDF3-206ENST00000612880 593 ntTSL 224.14■■□□□ 1.451e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-204ENST00000522282 445 ntTSL 324.14■■□□□ 1.451e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-203ENST00000519428 676 ntTSL 218.54■□□□□ 0.561e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.281e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.26■□□□□ 0.191e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.89□□□□□ -0.031e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.121e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-208ENST00000615676 5092 ntTSL 1 (best)13.82□□□□□ -0.21e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.76□□□□□ -0.211e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC13.17□□□□□ -0.31e-9■■■■□ 25.6
XRN2Q9H0D6 YTHDF3-210ENST00000617952 420 ntTSL 310.74□□□□□ -0.691e-9■■■■□ 25.6
XRN2Q9H0D6 AGPAT3-208ENST00000448287 454 ntTSL 313.4□□□□□ -0.265e-6■■■■□ 25.6
XRN2Q9H0D6 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC37.56■■■■□ 3.62e-6■■■■□ 25.6
XRN2Q9H0D6 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.88■■■■□ 3.172e-6■■■■□ 25.6
XRN2Q9H0D6 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.61■■■□□ 2.492e-6■■■■□ 25.6
XRN2Q9H0D6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.272e-6■■■■□ 25.6
XRN2Q9H0D6 KLHDC4-202ENST00000316853 1287 ntTSL 1 (best)21.3■■□□□ 11e-6■■■■□ 25.6
XRN2Q9H0D6 KLHDC4-215ENST00000566349 1377 ntTSL 219.7■□□□□ 0.741e-6■■■■□ 25.6
XRN2Q9H0D6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.382e-6■■■■□ 25.6
XRN2Q9H0D6 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.012e-6■■■■□ 25.6
XRN2Q9H0D6 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.681e-7■■■■□ 25.6
XRN2Q9H0D6 LARP1-211ENST00000521577 817 ntTSL 528.39■■■□□ 2.141e-6■■■■□ 25.6
XRN2Q9H0D6 LARP1-208ENST00000518892 399 ntTSL 324.96■■□□□ 1.592e-6■■■■□ 25.6
XRN2Q9H0D6 LARP1-204ENST00000518297 2630 ntTSL 520.41■□□□□ 0.861e-6■■■■□ 25.6
XRN2Q9H0D6 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.421e-6■■■■□ 25.6
XRN2Q9H0D6 LARP1-202ENST00000517616 501 ntTSL 53.82□□□□□ -1.82e-6■■■■□ 25.6
XRN2Q9H0D6 VEGFA-211ENST00000476772 1683 ntTSL 1 (best)31.36■■■□□ 2.612e-8■■■■□ 25.5
XRN2Q9H0D6 ARRDC1-AS1-202ENST00000496793 1424 ntTSL 228.52■■■□□ 2.169e-8■■■■□ 25.5
XRN2Q9H0D6 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.69■■□□□ 1.549e-8■■■■□ 25.5
XRN2Q9H0D6 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.7■■□□□ 1.239e-8■■■■□ 25.5
Retrieved 100 of 21,068 protein–RNA pairs in 136.5 ms