RNA–Protein interactions for RNA: ENST00000592138.5

TPM4-215, Transcript of tropomyosin 4, humanhuman

TSL 2

Gene TPM4, Length 635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-215ENST00000592138 NISCHQ9Y2I1 1504 aa23.44■■□□□ 1.34
TPM4-215ENST00000592138 CCDC180Q9P1Z9 1646 aa20.78■□□□□ 0.92
TPM4-215ENST00000592138 ABCC9O60706 1549 aa20.21■□□□□ 0.83
TPM4-215ENST00000592138 ZCCHC6Q5VYS8 1495 aaKnown RBP19.58■□□□□ 0.72
TPM4-215ENST00000592138 MYO15BQ96JP2 1530 aa19.53■□□□□ 0.72
TPM4-215ENST00000592138 NACADO15069 1562 aa19.53■□□□□ 0.72
TPM4-215ENST00000592138 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
TPM4-215ENST00000592138 DCAF1Q9Y4B6 1507 aa19.48■□□□□ 0.71
TPM4-215ENST00000592138 AEBP2Q6ZN18 517 aaPredicted RBP19.46■□□□□ 0.71
TPM4-215ENST00000592138 DNAJC5BQ9UF47 199 aa19.39■□□□□ 0.69
TPM4-215ENST00000592138 DCAF8L2P0C7V8 631 aa19.38■□□□□ 0.69
TPM4-215ENST00000592138 UNC13AQ9UPW8 1703 aa18.95■□□□□ 0.62
TPM4-215ENST00000592138 SCRIBQ14160 1630 aa18.89■□□□□ 0.62
TPM4-215ENST00000592138 BICRAQ9NZM4 1560 aa18.87■□□□□ 0.61
TPM4-215ENST00000592138 SHROOM4Q9ULL8 1493 aa18.82■□□□□ 0.6
TPM4-215ENST00000592138 PABPN1Q86U42 306 aaKnown RBP eCLIP18.79■□□□□ 0.6
TPM4-215ENST00000592138 EIF4G1Q04637 1599 aaKnown RBP18.37■□□□□ 0.53
TPM4-215ENST00000592138 CC2D2AQ9P2K1 1620 aa18.31■□□□□ 0.52
TPM4-215ENST00000592138 CECR2Q9BXF3 1484 aa18.26■□□□□ 0.51
TPM4-215ENST00000592138 BAZ1AQ9NRL2 1556 aaPredicted RBP18.17■□□□□ 0.5
TPM4-215ENST00000592138 SMARCA4P51532 1647 aa18.14■□□□□ 0.49
TPM4-215ENST00000592138 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
TPM4-215ENST00000592138 DNAJC5Q9H3Z4 198 aa18.13■□□□□ 0.49
TPM4-215ENST00000592138 SMARCA2P51531 1590 aa18.03■□□□□ 0.48
TPM4-215ENST00000592138 MROH2BQ7Z745 1585 aa18.03■□□□□ 0.48
TPM4-215ENST00000592138 PEG3Q9GZU2 1588 aa18.03■□□□□ 0.48
TPM4-215ENST00000592138 NCAPD3P42695 1498 aa18.02■□□□□ 0.48
TPM4-215ENST00000592138 ATAD2BQ9ULI0 1458 aa18.02■□□□□ 0.48
TPM4-215ENST00000592138 HMGXB3Q12766 1538 aa17.95■□□□□ 0.46
TPM4-215ENST00000592138 RSF1Q96T23 1441 aaPredicted RBP17.9■□□□□ 0.46
TPM4-215ENST00000592138 BAZ1BQ9UIG0 1483 aaKnown RBP17.87■□□□□ 0.45
TPM4-215ENST00000592138 WIZO95785 1651 aa17.81■□□□□ 0.44
TPM4-215ENST00000592138 TOP2AP11388 1531 aaKnown RBP17.7■□□□□ 0.42
TPM4-215ENST00000592138 CUX2O14529 1486 aa17.66■□□□□ 0.42
TPM4-215ENST00000592138 LAMC3Q9Y6N6 1575 aa17.51■□□□□ 0.39
TPM4-215ENST00000592138 CADPSQ9ULU8 1353 aa17.48■□□□□ 0.39
TPM4-215ENST00000592138 CCDC88BA6NC98 1476 aa17.46■□□□□ 0.39
TPM4-215ENST00000592138 NESP48681 1621 aa17.44■□□□□ 0.38
TPM4-215ENST00000592138 SUPT5HO00267 1087 aaKnown RBP17.44■□□□□ 0.38
TPM4-215ENST00000592138 ERCC6Q03468 1493 aa17.44■□□□□ 0.38
TPM4-215ENST00000592138 CFTRP13569 1480 aa17.43■□□□□ 0.38
TPM4-215ENST00000592138 PDS5BQ9NTI5 1447 aa17.38■□□□□ 0.37
TPM4-215ENST00000592138 THOC2Q8NI27 1593 aaKnown RBP17.29■□□□□ 0.36
TPM4-215ENST00000592138 FANCD2Q9BXW9 1451 aa17.26■□□□□ 0.35
TPM4-215ENST00000592138 PRDM2Q13029 1718 aa17.24■□□□□ 0.35
TPM4-215ENST00000592138 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
TPM4-215ENST00000592138 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
TPM4-215ENST00000592138 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
TPM4-215ENST00000592138 WDR62O43379 1518 aa17.14■□□□□ 0.33
TPM4-215ENST00000592138 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
TPM4-215ENST00000592138 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
TPM4-215ENST00000592138 TRIM41Q8WV44 630 aa17.03■□□□□ 0.32
TPM4-215ENST00000592138 DNMBPQ6XZF7 1577 aa17■□□□□ 0.31
TPM4-215ENST00000592138 TOPBP1Q92547 1522 aa17■□□□□ 0.31
TPM4-215ENST00000592138 CUX1P39880 1505 aa16.91■□□□□ 0.3
TPM4-215ENST00000592138 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
TPM4-215ENST00000592138 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
TPM4-215ENST00000592138 POLA1P09884 1462 aaPredicted RBP16.86■□□□□ 0.29
TPM4-215ENST00000592138 TOP2BQ02880 1626 aa16.83■□□□□ 0.28
TPM4-215ENST00000592138 FGD5Q6ZNL6 1462 aa16.83■□□□□ 0.28
TPM4-215ENST00000592138 BIVM-ERCC5R4GMW8 1640 aa16.82■□□□□ 0.28
TPM4-215ENST00000592138 TARBP1Q13395 1621 aaKnown RBP16.8■□□□□ 0.28
TPM4-215ENST00000592138 SYNJ1O43426 1573 aa16.8■□□□□ 0.28
TPM4-215ENST00000592138 SOGA1O94964 1423 aa16.79■□□□□ 0.28
TPM4-215ENST00000592138 WDR97A6NE52 1622 aa16.76■□□□□ 0.27
TPM4-215ENST00000592138 RAD54L2Q9Y4B4 1467 aa16.74■□□□□ 0.27
TPM4-215ENST00000592138 ZNF608Q9ULD9 1512 aaPredicted RBP16.73■□□□□ 0.27
TPM4-215ENST00000592138 ABCA10Q8WWZ4 1543 aa16.72■□□□□ 0.27
TPM4-215ENST00000592138 EIF4G3O43432 1585 aaKnown RBP16.69■□□□□ 0.26
TPM4-215ENST00000592138 AQRO60306 1485 aaKnown RBP eCLIP16.66■□□□□ 0.267e-7■■■■□ 20.3
TPM4-215ENST00000592138 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.26
TPM4-215ENST00000592138 RIMBP3CA6NJZ7 1639 aa16.64■□□□□ 0.25
TPM4-215ENST00000592138 RIMBP3BA6NNM3 1639 aa16.64■□□□□ 0.25
TPM4-215ENST00000592138 RIMBP3Q9UFD9 1639 aa16.64■□□□□ 0.25
TPM4-215ENST00000592138 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
TPM4-215ENST00000592138 OSCARQ8IYS5 282 aa16.62■□□□□ 0.25
TPM4-215ENST00000592138 ABCA5Q8WWZ7 1642 aa16.62■□□□□ 0.25
TPM4-215ENST00000592138 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
TPM4-215ENST00000592138 GRIN2BQ13224 1484 aa16.6■□□□□ 0.25
TPM4-215ENST00000592138 MAGI1Q96QZ7 1491 aaPredicted RBP16.56■□□□□ 0.24
TPM4-215ENST00000592138 ERICH3Q5RHP9 1530 aa16.53■□□□□ 0.24
TPM4-215ENST00000592138 SNAPC4Q5SXM2 1469 aa16.53■□□□□ 0.24
TPM4-215ENST00000592138 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
TPM4-215ENST00000592138 ARHGEF11O15085 1522 aa16.52■□□□□ 0.24
TPM4-215ENST00000592138 PBRM1Q86U86 1689 aa16.52■□□□□ 0.23
TPM4-215ENST00000592138 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
TPM4-215ENST00000592138 ADAMTS12P58397 1594 aa16.45■□□□□ 0.22
TPM4-215ENST00000592138 FHAD1B1AJZ9 1412 aa16.45■□□□□ 0.22
TPM4-215ENST00000592138 IGF1RP08069 1367 aa16.43■□□□□ 0.22
TPM4-215ENST00000592138 CHMP7Q8WUX9 453 aaPredicted RBP16.41■□□□□ 0.22
TPM4-215ENST00000592138 CHD1O14646 1710 aa16.39■□□□□ 0.21
TPM4-215ENST00000592138 PHF23Q9BUL5 403 aaPredicted RBP16.39■□□□□ 0.21
TPM4-215ENST00000592138 CUL7Q14999 1698 aa16.39■□□□□ 0.21
TPM4-215ENST00000592138 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
TPM4-215ENST00000592138 FBLN2P98095 1184 aa16.38■□□□□ 0.21
TPM4-215ENST00000592138 EEA1Q15075 1411 aa16.35■□□□□ 0.21
TPM4-215ENST00000592138 RUSC2Q8N2Y8 1516 aa16.34■□□□□ 0.21
TPM4-215ENST00000592138 NUP160Q12769 1436 aa16.33■□□□□ 0.2
TPM4-215ENST00000592138 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
TPM4-215ENST00000592138 CARMIL1Q5VZK9 1371 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms