RNA–Protein interactions for RNA: ENST00000423902.6

CHD7-201, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CHD7, Length 11,568 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-201ENST00000423902 NISCHQ9Y2I1 1504 aa15.38■□□□□ 0.05
CHD7-201ENST00000423902 DCAF8L2P0C7V8 631 aa15.31■□□□□ 0.04
CHD7-201ENST00000423902 SHROOM4Q9ULL8 1493 aa13.92□□□□□ -0.18
CHD7-201ENST00000423902 FAM9AQ8IZU1 332 aaPredicted RBP13.89□□□□□ -0.19
CHD7-201ENST00000423902 SUPT5HO00267 1087 aaKnown RBP13.87□□□□□ -0.19
CHD7-201ENST00000423902 ABCC9O60706 1549 aa13.56□□□□□ -0.24
CHD7-201ENST00000423902 APLP2Q06481 763 aa13.43□□□□□ -0.26
CHD7-201ENST00000423902 CCDC180Q9P1Z9 1646 aa13.42□□□□□ -0.26
CHD7-201ENST00000423902 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
CHD7-201ENST00000423902 PABPN1Q86U42 306 aaKnown RBP eCLIP13.15□□□□□ -0.3
CHD7-201ENST00000423902 ATP1B4Q9UN42 357 aaPredicted RBP13.08□□□□□ -0.32
CHD7-201ENST00000423902 TRIM41Q8WV44 630 aa13.07□□□□□ -0.32
CHD7-201ENST00000423902 RB1CC1Q8TDY2 1594 aa13.04□□□□□ -0.32
CHD7-201ENST00000423902 RANGAP1P46060 587 aaPredicted RBP12.99□□□□□ -0.33
CHD7-201ENST00000423902 UBTFP17480 764 aaKnown RBP12.97□□□□□ -0.33
CHD7-201ENST00000423902 SCRIBQ14160 1630 aa12.92□□□□□ -0.34
CHD7-201ENST00000423902 MYT1LQ9UL68 1186 aa12.88□□□□□ -0.35
CHD7-201ENST00000423902 NACADO15069 1562 aa12.85□□□□□ -0.35
CHD7-201ENST00000423902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
CHD7-201ENST00000423902 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
CHD7-201ENST00000423902 TTBK1Q5TCY1 1321 aaPredicted RBP12.8□□□□□ -0.36
CHD7-201ENST00000423902 FBLN2P98095 1184 aa12.68□□□□□ -0.38
CHD7-201ENST00000423902 ZCCHC6Q5VYS8 1495 aaKnown RBP12.66□□□□□ -0.38
CHD7-201ENST00000423902 ERCC6Q03468 1493 aa12.49□□□□□ -0.41
CHD7-201ENST00000423902 NPM1P06748 294 aaKnown RBP eCLIP12.46□□□□□ -0.41
CHD7-201ENST00000423902 CHIC1Q5VXU3 224 aa12.41□□□□□ -0.42
CHD7-201ENST00000423902 PCGF6Q9BYE7 350 aa12.38□□□□□ -0.43
CHD7-201ENST00000423902 BAZ1BQ9UIG0 1483 aaKnown RBP12.38□□□□□ -0.43
CHD7-201ENST00000423902 PELP1Q8IZL8 1130 aaKnown RBP12.35□□□□□ -0.43
CHD7-201ENST00000423902 ESF1Q9H501 851 aaKnown RBP12.34□□□□□ -0.43
CHD7-201ENST00000423902 DCAF1Q9Y4B6 1507 aa12.34□□□□□ -0.43
CHD7-201ENST00000423902 CCER1Q8TC90 406 aaPredicted RBP12.33□□□□□ -0.43
CHD7-201ENST00000423902 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
CHD7-201ENST00000423902 CHMP7Q8WUX9 453 aaPredicted RBP12.31□□□□□ -0.44
CHD7-201ENST00000423902 ITGAEP38570 1179 aa12.3□□□□□ -0.44
CHD7-201ENST00000423902 ZEB1P37275 1124 aaPredicted RBP12.28□□□□□ -0.44
CHD7-201ENST00000423902 BAZ1AQ9NRL2 1556 aaPredicted RBP12.27□□□□□ -0.44
CHD7-201ENST00000423902 SMARCA2P51531 1590 aa12.23□□□□□ -0.45
CHD7-201ENST00000423902 FAM50AQ14320 339 aaKnown RBP12.2□□□□□ -0.46
CHD7-201ENST00000423902 BCANQ96GW7 911 aa12.2□□□□□ -0.46
CHD7-201ENST00000423902 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
CHD7-201ENST00000423902 MYO15BQ96JP2 1530 aa12.17□□□□□ -0.46
CHD7-201ENST00000423902 PPARGC1BQ86YN6 1023 aaKnown RBP12.13□□□□□ -0.47
CHD7-201ENST00000423902 TRIM52Q96A61 297 aa12.12□□□□□ -0.47
CHD7-201ENST00000423902 PDS5BQ9NTI5 1447 aa12.11□□□□□ -0.47
CHD7-201ENST00000423902 P3H3Q8IVL6 736 aa12.09□□□□□ -0.47
CHD7-201ENST00000423902 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
CHD7-201ENST00000423902 CSRNP3Q8WYN3 585 aa12.08□□□□□ -0.47
CHD7-201ENST00000423902 POLR3GLQ9BT43 218 aa12.08□□□□□ -0.48
CHD7-201ENST00000423902 STAG3Q9UJ98 1225 aa12.07□□□□□ -0.48
CHD7-201ENST00000423902 ARID3CA6NKF2 412 aa12.06□□□□□ -0.48
CHD7-201ENST00000423902 ZNF777Q9ULD5 760 aaPredicted RBP12.06□□□□□ -0.48
CHD7-201ENST00000423902 TRIM26Q12899 539 aaPredicted RBP12.03□□□□□ -0.48
CHD7-201ENST00000423902 PLPPR3Q6T4P5 718 aa12.02□□□□□ -0.49
CHD7-201ENST00000423902 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
CHD7-201ENST00000423902 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
CHD7-201ENST00000423902 KIF27Q86VH2 1401 aa11.96□□□□□ -0.5
CHD7-201ENST00000423902 RSF1Q96T23 1441 aaPredicted RBP11.94□□□□□ -0.5
CHD7-201ENST00000423902 WRNQ14191 1432 aaPredicted RBP eCLIP11.93□□□□□ -0.5
CHD7-201ENST00000423902 ARID4BQ4LE39 1312 aaPredicted RBP11.92□□□□□ -0.5
CHD7-201ENST00000423902 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
CHD7-201ENST00000423902 PLEKHD1A6NEE1 506 aa11.9□□□□□ -0.51
CHD7-201ENST00000423902 TSPY4P0CV99 314 aa11.89□□□□□ -0.51
CHD7-201ENST00000423902 TSPY10P0CW01 314 aa11.89□□□□□ -0.51
CHD7-201ENST00000423902 EEA1Q15075 1411 aa11.88□□□□□ -0.51
CHD7-201ENST00000423902 NEFLP07196 543 aa11.88□□□□□ -0.51
CHD7-201ENST00000423902 KCNH8Q96L42 1107 aa11.87□□□□□ -0.51
CHD7-201ENST00000423902 CEP164Q9UPV0 1460 aa11.87□□□□□ -0.51
CHD7-201ENST00000423902 CENPBP07199 599 aaPredicted RBP11.86□□□□□ -0.51
CHD7-201ENST00000423902 WIZO95785 1651 aa11.86□□□□□ -0.51
CHD7-201ENST00000423902 CHGAP10645 457 aaKnown RBP11.85□□□□□ -0.51
CHD7-201ENST00000423902 ABCC8Q09428 1581 aa11.85□□□□□ -0.51
CHD7-201ENST00000423902 MTUS2Q5JR59 1369 aa11.85□□□□□ -0.51
CHD7-201ENST00000423902 EIF4G1Q04637 1599 aaKnown RBP11.85□□□□□ -0.51
CHD7-201ENST00000423902 NEFMP07197 916 aa11.84□□□□□ -0.51
CHD7-201ENST00000423902 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
CHD7-201ENST00000423902 TOP2AP11388 1531 aaKnown RBP11.82□□□□□ -0.52
CHD7-201ENST00000423902 UNC13AQ9UPW8 1703 aa11.82□□□□□ -0.52
CHD7-201ENST00000423902 CARMIL2Q6F5E8 1435 aa11.81□□□□□ -0.52
CHD7-201ENST00000423902 ACIN1Q9UKV3 1341 aaKnown RBP11.79□□□□□ -0.52
CHD7-201ENST00000423902 NEUROD1Q13562 356 aa11.79□□□□□ -0.52
CHD7-201ENST00000423902 CC2D2AQ9P2K1 1620 aa11.78□□□□□ -0.52
CHD7-201ENST00000423902 MROH2BQ7Z745 1585 aa11.77□□□□□ -0.53
CHD7-201ENST00000423902 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.77□□□□□ -0.531e-6■■■□□ 16.3
CHD7-201ENST00000423902 CADPSQ9ULU8 1353 aa11.76□□□□□ -0.53
CHD7-201ENST00000423902 CUX2O14529 1486 aa11.76□□□□□ -0.53
CHD7-201ENST00000423902 CLIP1P30622 1438 aa11.76□□□□□ -0.53
CHD7-201ENST00000423902 SOGA1O94964 1423 aa11.76□□□□□ -0.53
CHD7-201ENST00000423902 GOLGA3Q08378 1498 aa11.75□□□□□ -0.53
CHD7-201ENST00000423902 SLC24A1O60721 1099 aa11.75□□□□□ -0.53
CHD7-201ENST00000423902 PPP1R15AO75807 674 aaPredicted RBP11.75□□□□□ -0.53
CHD7-201ENST00000423902 C14orf37Q86TY3 774 aa11.74□□□□□ -0.53
CHD7-201ENST00000423902 CNGB1Q14028 1251 aaPredicted RBP11.74□□□□□ -0.53
CHD7-201ENST00000423902 ATAD2BQ9ULI0 1458 aa11.73□□□□□ -0.53
CHD7-201ENST00000423902 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
CHD7-201ENST00000423902 OSCARQ8IYS5 282 aa11.71□□□□□ -0.53
CHD7-201ENST00000423902 FANCD2Q9BXW9 1451 aa11.69□□□□□ -0.54
CHD7-201ENST00000423902 FHAD1B1AJZ9 1412 aa11.68□□□□□ -0.54
CHD7-201ENST00000423902 CARMIL1Q5VZK9 1371 aa11.67□□□□□ -0.54
CHD7-201ENST00000423902 SCAF1Q9H7N4 1312 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms