Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SSX3Q99909 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.95■■□□□ 1.11
SSX3Q99909 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
SSX3Q99909 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.95■■□□□ 1.1
SSX3Q99909 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
SSX3Q99909 WASH5P-204ENST00000632292 975 ntBASIC21.94■■□□□ 1.1
SSX3Q99909 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SSX3Q99909 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SSX3Q99909 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SSX3Q99909 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SSX3Q99909 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SSX3Q99909 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SSX3Q99909 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.92■■□□□ 1.1
SSX3Q99909 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.92■■□□□ 1.1
SSX3Q99909 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
SSX3Q99909 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SSX3Q99909 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.91■■□□□ 1.1
SSX3Q99909 RPS2P35-201ENST00000443417 897 ntBASIC21.91■■□□□ 1.1
SSX3Q99909 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SSX3Q99909 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SSX3Q99909 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SSX3Q99909 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SSX3Q99909 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
SSX3Q99909 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SSX3Q99909 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SSX3Q99909 AP006261.1-201ENST00000584783 668 ntBASIC21.89■■□□□ 1.09
SSX3Q99909 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SSX3Q99909 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
SSX3Q99909 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.88■■□□□ 1.09
SSX3Q99909 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX3Q99909 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX3Q99909 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SSX3Q99909 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SSX3Q99909 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SSX3Q99909 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SSX3Q99909 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SSX3Q99909 AL162393.1-201ENST00000437852 946 ntBASIC21.84■■□□□ 1.09
SSX3Q99909 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.83■■□□□ 1.09
SSX3Q99909 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SSX3Q99909 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX3Q99909 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.82■■□□□ 1.08
SSX3Q99909 MIR762-201ENST00000390236 83 ntBASIC21.82■■□□□ 1.08
SSX3Q99909 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX3Q99909 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX3Q99909 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.81■■□□□ 1.08
SSX3Q99909 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.81■■□□□ 1.08
SSX3Q99909 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.81■■□□□ 1.08
SSX3Q99909 MIR3665-201ENST00000578708 105 ntBASIC21.81■■□□□ 1.08
SSX3Q99909 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX3Q99909 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX3Q99909 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX3Q99909 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SSX3Q99909 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX3Q99909 ABCB10P1-201ENST00000614297 2181 ntBASIC21.8■■□□□ 1.08
SSX3Q99909 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.8■■□□□ 1.08
SSX3Q99909 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX3Q99909 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
SSX3Q99909 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX3Q99909 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX3Q99909 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.78■■□□□ 1.08
SSX3Q99909 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SSX3Q99909 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SSX3Q99909 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.78■■□□□ 1.08
SSX3Q99909 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SSX3Q99909 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SSX3Q99909 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.77■■□□□ 1.08
SSX3Q99909 AC005559.1-201ENST00000589661 871 ntBASIC21.76■■□□□ 1.07
SSX3Q99909 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SSX3Q99909 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SSX3Q99909 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SSX3Q99909 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.75■■□□□ 1.07
SSX3Q99909 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX3Q99909 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX3Q99909 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX3Q99909 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SSX3Q99909 AC135731.1-201ENST00000569415 2548 ntBASIC21.74■■□□□ 1.07
SSX3Q99909 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX3Q99909 ABCB10P3-201ENST00000561950 2166 ntBASIC21.73■■□□□ 1.07
SSX3Q99909 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX3Q99909 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX3Q99909 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX3Q99909 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX3Q99909 DUX4L28-201ENST00000623687 678 ntBASIC21.72■■□□□ 1.07
SSX3Q99909 AC120057.4-201ENST00000624722 1615 ntBASIC21.72■■□□□ 1.07
SSX3Q99909 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SSX3Q99909 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.72■■□□□ 1.07
SSX3Q99909 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SSX3Q99909 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SSX3Q99909 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SSX3Q99909 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SSX3Q99909 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SSX3Q99909 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX3Q99909 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
SSX3Q99909 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.68■■□□□ 1.06
SSX3Q99909 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
SSX3Q99909 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX3Q99909 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SSX3Q99909 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SSX3Q99909 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.66■■□□□ 1.06
SSX3Q99909 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms