Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDX1P47902 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CDX1P47902 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDX1P47902 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDX1P47902 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CDX1P47902 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDX1P47902 AL391121.1-201ENST00000607967 1349 ntBASIC21.33■■□□□ 1.01
CDX1P47902 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDX1P47902 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CDX1P47902 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX1P47902 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDX1P47902 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CDX1P47902 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX1P47902 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CDX1P47902 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.3■■□□□ 1
CDX1P47902 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CDX1P47902 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.29■■□□□ 1
CDX1P47902 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.29■■□□□ 1
CDX1P47902 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX1P47902 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDX1P47902 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX1P47902 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.27■■□□□ 1
CDX1P47902 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX1P47902 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.26■□□□□ 0.99
CDX1P47902 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX1P47902 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX1P47902 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
CDX1P47902 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX1P47902 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX1P47902 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.23■□□□□ 0.99
CDX1P47902 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDX1P47902 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CDX1P47902 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX1P47902 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX1P47902 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CDX1P47902 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDX1P47902 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CDX1P47902 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDX1P47902 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.2■□□□□ 0.98
CDX1P47902 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDX1P47902 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDX1P47902 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.18■□□□□ 0.98
CDX1P47902 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDX1P47902 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX1P47902 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.17■□□□□ 0.98
CDX1P47902 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDX1P47902 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.17■□□□□ 0.98
CDX1P47902 WASH5P-204ENST00000632292 975 ntBASIC21.16■□□□□ 0.98
CDX1P47902 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CDX1P47902 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX1P47902 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDX1P47902 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX1P47902 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.14■□□□□ 0.97
CDX1P47902 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDX1P47902 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC21.12■□□□□ 0.97
CDX1P47902 AP006261.1-201ENST00000584783 668 ntBASIC21.12■□□□□ 0.97
CDX1P47902 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.11■□□□□ 0.97
CDX1P47902 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX1P47902 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CDX1P47902 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDX1P47902 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX1P47902 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX1P47902 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
CDX1P47902 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDX1P47902 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX1P47902 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.07■□□□□ 0.96
CDX1P47902 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX1P47902 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX1P47902 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.06■□□□□ 0.96
CDX1P47902 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX1P47902 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX1P47902 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX1P47902 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
CDX1P47902 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms