Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
CDX1P47902 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
CDX1P47902 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX1P47902 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CDX1P47902 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CDX1P47902 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC25.89■■□□□ 1.74
CDX1P47902 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CDX1P47902 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CDX1P47902 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
CDX1P47902 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CDX1P47902 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CDX1P47902 AL356512.1-201ENST00000607453 1739 ntBASIC25.74■■□□□ 1.71
CDX1P47902 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.51■■□□□ 1.67
CDX1P47902 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.44■■□□□ 1.66
CDX1P47902 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC25.41■■□□□ 1.66
CDX1P47902 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
CDX1P47902 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
CDX1P47902 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDX1P47902 HES6-203ENST00000409160 1600 ntTSL 2 BASIC25.2■■□□□ 1.62
CDX1P47902 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC25.08■■□□□ 1.61
CDX1P47902 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
CDX1P47902 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC24.94■■□□□ 1.58
CDX1P47902 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CDX1P47902 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
CDX1P47902 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CDX1P47902 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
CDX1P47902 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC24.8■■□□□ 1.56
CDX1P47902 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC24.79■■□□□ 1.56
CDX1P47902 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC24.69■■□□□ 1.54
CDX1P47902 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC24.68■■□□□ 1.54
CDX1P47902 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX1P47902 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CDX1P47902 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.55■■□□□ 1.52
CDX1P47902 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
CDX1P47902 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CDX1P47902 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CDX1P47902 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX1P47902 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
CDX1P47902 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
CDX1P47902 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CDX1P47902 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CDX1P47902 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CDX1P47902 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CDX1P47902 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CDX1P47902 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CDX1P47902 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CDX1P47902 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDX1P47902 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDX1P47902 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC23.95■■□□□ 1.42
CDX1P47902 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDX1P47902 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC23.93■■□□□ 1.42
CDX1P47902 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CDX1P47902 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDX1P47902 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CDX1P47902 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
CDX1P47902 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CDX1P47902 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CDX1P47902 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.82■■□□□ 1.4
CDX1P47902 INO80B-203ENST00000409917 796 ntTSL 2 BASIC23.81■■□□□ 1.4
CDX1P47902 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX1P47902 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
CDX1P47902 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC23.74■■□□□ 1.39
CDX1P47902 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CDX1P47902 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDX1P47902 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX1P47902 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDX1P47902 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDX1P47902 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
CDX1P47902 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CDX1P47902 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CDX1P47902 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDX1P47902 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.6■■□□□ 1.37
CDX1P47902 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.57■■□□□ 1.36
CDX1P47902 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.57■■□□□ 1.36
CDX1P47902 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDX1P47902 AC015813.7-201ENST00000623294 581 ntBASIC23.57■■□□□ 1.36
CDX1P47902 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDX1P47902 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDX1P47902 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDX1P47902 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDX1P47902 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDX1P47902 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDX1P47902 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CDX1P47902 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC23.46■■□□□ 1.35
CDX1P47902 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CDX1P47902 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
CDX1P47902 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC23.41■■□□□ 1.34
CDX1P47902 AC006077.2-201ENST00000623591 457 ntBASIC23.41■■□□□ 1.34
CDX1P47902 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CDX1P47902 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
CDX1P47902 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC23.39■■□□□ 1.33
CDX1P47902 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC23.37■■□□□ 1.33
CDX1P47902 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.36■■□□□ 1.33
CDX1P47902 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDX1P47902 ZNRF2P1-201ENST00000441407 443 ntBASIC23.3■■□□□ 1.32
CDX1P47902 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CDX1P47902 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDX1P47902 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDX1P47902 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDX1P47902 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms