RNA–Protein interactions for RNA: ENST00000311626.8

HOXB3-201, Transcript of homeobox B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXB3, Length 2,642 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-201ENST00000311626 NISCHQ9Y2I1 1504 aa52.29■■■■■ 5.96
HOXB3-201ENST00000311626 SHROOM4Q9ULL8 1493 aa45.16■■■■■ 4.82
HOXB3-201ENST00000311626 SUPT5HO00267 1087 aaKnown RBP44.28■■■■■ 4.68
HOXB3-201ENST00000311626 ZCCHC6Q5VYS8 1495 aaKnown RBP44.19■■■■■ 4.66
HOXB3-201ENST00000311626 CCDC180Q9P1Z9 1646 aa44.17■■■■■ 4.66
HOXB3-201ENST00000311626 DCAF8L2P0C7V8 631 aa43.94■■■■■ 4.63
HOXB3-201ENST00000311626 CHIC1Q5VXU3 224 aa42.87■■■■■ 4.45
HOXB3-201ENST00000311626 MYO15BQ96JP2 1530 aa42.76■■■■■ 4.44
HOXB3-201ENST00000311626 DCAF1Q9Y4B6 1507 aa42.63■■■■■ 4.42
HOXB3-201ENST00000311626 SCRIBQ14160 1630 aa41.84■■■■■ 4.29
HOXB3-201ENST00000311626 LOC105371045A0A1W2PR82 267 aa41.84■■■■■ 4.29
HOXB3-201ENST00000311626 PCGF6Q9BYE7 350 aa41.76■■■■■ 4.28
HOXB3-201ENST00000311626 ABCC9O60706 1549 aa41.68■■■■■ 4.26
HOXB3-201ENST00000311626 HRCP23327 699 aa41.58■■■■■ 4.25
HOXB3-201ENST00000311626 RSF1Q96T23 1441 aaPredicted RBP41.51■■■■■ 4.24
HOXB3-201ENST00000311626 RB1CC1Q8TDY2 1594 aa41.11■■■■■ 4.17
HOXB3-201ENST00000311626 TRIM41Q8WV44 630 aa41.06■■■■■ 4.16
HOXB3-201ENST00000311626 PPARGC1BQ86YN6 1023 aaKnown RBP41.05■■■■■ 4.16
HOXB3-201ENST00000311626 CECR2Q9BXF3 1484 aa41.02■■■■■ 4.16
HOXB3-201ENST00000311626 FAM9AQ8IZU1 332 aaPredicted RBP41.01■■■■■ 4.16
HOXB3-201ENST00000311626 NACADO15069 1562 aa40.93■■■■■ 4.14
HOXB3-201ENST00000311626 EHMT2Q96KQ7 1210 aa40.88■■■■■ 4.13
HOXB3-201ENST00000311626 MROH2BQ7Z745 1585 aa40.79■■■■■ 4.12
HOXB3-201ENST00000311626 TRIM26Q12899 539 aaPredicted RBP40.71■■■■■ 4.11
HOXB3-201ENST00000311626 WIZO95785 1651 aa40.59■■■■■ 4.09
HOXB3-201ENST00000311626 BAZ1AQ9NRL2 1556 aaPredicted RBP40.12■■■■■ 4.01
HOXB3-201ENST00000311626 EIF4G1Q04637 1599 aaKnown RBP39.84■■■■□ 3.97
HOXB3-201ENST00000311626 PABPN1Q86U42 306 aaKnown RBP eCLIP39.8■■■■□ 3.96
HOXB3-201ENST00000311626 SMARCA4P51532 1647 aa39.8■■■■□ 3.96
HOXB3-201ENST00000311626 UNC13AQ9UPW8 1703 aa39.8■■■■□ 3.96
HOXB3-201ENST00000311626 ABCC8Q09428 1581 aa39.8■■■■□ 3.96
HOXB3-201ENST00000311626 CCDC88BA6NC98 1476 aa39.78■■■■□ 3.96
HOXB3-201ENST00000311626 TOP2AP11388 1531 aaKnown RBP39.76■■■■□ 3.96
HOXB3-201ENST00000311626 ZEB1P37275 1124 aaPredicted RBP39.66■■■■□ 3.94
HOXB3-201ENST00000311626 SMARCA2P51531 1590 aa39.62■■■■□ 3.93
HOXB3-201ENST00000311626 TTBK1Q5TCY1 1321 aaPredicted RBP39.52■■■■□ 3.92
HOXB3-201ENST00000311626 SOGA1O94964 1423 aa39.45■■■■□ 3.91
HOXB3-201ENST00000311626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.34■■■■□ 3.89
HOXB3-201ENST00000311626 BICRAQ9NZM4 1560 aa39.33■■■■□ 3.89
HOXB3-201ENST00000311626 RUSC2Q8N2Y8 1516 aa39.3■■■■□ 3.88
HOXB3-201ENST00000311626 UBTFP17480 764 aaKnown RBP39.18■■■■□ 3.86
HOXB3-201ENST00000311626 CEP162Q5TB80 1403 aa39.18■■■■□ 3.86
HOXB3-201ENST00000311626 CSRNP3Q8WYN3 585 aa39.17■■■■□ 3.86
HOXB3-201ENST00000311626 CCER1Q8TC90 406 aaPredicted RBP39.13■■■■□ 3.85
HOXB3-201ENST00000311626 TNIKQ9UKE5 1360 aa39.02■■■■□ 3.84
HOXB3-201ENST00000311626 WRNQ14191 1432 aaPredicted RBP eCLIP38.98■■■■□ 3.83
HOXB3-201ENST00000311626 EEA1Q15075 1411 aa38.87■■■■□ 3.81
HOXB3-201ENST00000311626 PEG3Q9GZU2 1588 aa38.85■■■■□ 3.81
HOXB3-201ENST00000311626 ATAD2BQ9ULI0 1458 aa38.83■■■■□ 3.81
HOXB3-201ENST00000311626 SYNJ1O43426 1573 aa38.8■■■■□ 3.8
HOXB3-201ENST00000311626 GOLGA3Q08378 1498 aa38.78■■■■□ 3.8
HOXB3-201ENST00000311626 BAZ1BQ9UIG0 1483 aaKnown RBP38.74■■■■□ 3.79
HOXB3-201ENST00000311626 RANGAP1P46060 587 aaPredicted RBP38.69■■■■□ 3.78
HOXB3-201ENST00000311626 CEP164Q9UPV0 1460 aa38.53■■■■□ 3.76
HOXB3-201ENST00000311626 SCAF1Q9H7N4 1312 aaKnown RBP38.46■■■■□ 3.75
HOXB3-201ENST00000311626 CLIP1P30622 1438 aa38.44■■■■□ 3.74
HOXB3-201ENST00000311626 HNRNPUL2Q1KMD3 747 aaKnown RBP38.44■■■■□ 3.74
HOXB3-201ENST00000311626 RAPGEF2Q9Y4G8 1499 aa38.42■■■■□ 3.74
HOXB3-201ENST00000311626 KIF21BO75037 1637 aa38.39■■■■□ 3.74
HOXB3-201ENST00000311626 DIEXFQ68CQ4 756 aaKnown RBP38.33■■■■□ 3.73
HOXB3-201ENST00000311626 VPS8Q8N3P4 1428 aa38.2■■■■□ 3.71
HOXB3-201ENST00000311626 APLP2Q06481 763 aa38.2■■■■□ 3.71
HOXB3-201ENST00000311626 TOP2BQ02880 1626 aa38.18■■■■□ 3.7
HOXB3-201ENST00000311626 NEUROD1Q13562 356 aa38.07■■■■□ 3.68
HOXB3-201ENST00000311626 ACIN1Q9UKV3 1341 aaKnown RBP37.98■■■■□ 3.67
HOXB3-201ENST00000311626 ZNF316A6NFI3 1004 aaPredicted RBP37.98■■■■□ 3.67
HOXB3-201ENST00000311626 BIVM-ERCC5R4GMW8 1640 aa37.98■■■■□ 3.67
HOXB3-201ENST00000311626 NCAPD3P42695 1498 aa37.96■■■■□ 3.67
HOXB3-201ENST00000311626 CUX1P39880 1505 aa37.94■■■■□ 3.66
HOXB3-201ENST00000311626 PRXQ9BXM0 1461 aa37.88■■■■□ 3.65
HOXB3-201ENST00000311626 HMGXB3Q12766 1538 aa37.86■■■■□ 3.65
HOXB3-201ENST00000311626 KANK4Q5T7N3 995 aaPredicted RBP37.83■■■■□ 3.65
HOXB3-201ENST00000311626 ARAP1Q96P48 1450 aa37.8■■■■□ 3.64
HOXB3-201ENST00000311626 ERICH3Q5RHP9 1530 aa37.74■■■■□ 3.63
HOXB3-201ENST00000311626 KIF27Q86VH2 1401 aa37.73■■■■□ 3.63
HOXB3-201ENST00000311626 CFTRP13569 1480 aa37.72■■■■□ 3.63
HOXB3-201ENST00000311626 CENPBP07199 599 aaPredicted RBP37.67■■■■□ 3.62
HOXB3-201ENST00000311626 YTHDC1Q96MU7 727 aaKnown RBP37.67■■■■□ 3.62
HOXB3-201ENST00000311626 GTF3C3Q9Y5Q9 886 aa37.66■■■■□ 3.62
HOXB3-201ENST00000311626 MIER1Q8N108 512 aa37.59■■■■□ 3.61
HOXB3-201ENST00000311626 ITGAEP38570 1179 aa37.49■■■■□ 3.59
HOXB3-201ENST00000311626 CUX2O14529 1486 aa37.47■■■■□ 3.59
HOXB3-201ENST00000311626 ARHGAP35Q9NRY4 1499 aa37.47■■■■□ 3.59
HOXB3-201ENST00000311626 DHX57Q6P158 1386 aaKnown RBP37.43■■■■□ 3.58
HOXB3-201ENST00000311626 IGF1RP08069 1367 aa37.4■■■■□ 3.58
HOXB3-201ENST00000311626 CADPSQ9ULU8 1353 aa37.36■■■■□ 3.57
HOXB3-201ENST00000311626 FGD5Q6ZNL6 1462 aa37.27■■■■□ 3.56
HOXB3-201ENST00000311626 RRBP1Q9P2E9 1410 aaKnown RBP37.27■■■■□ 3.56
HOXB3-201ENST00000311626 P3H3Q8IVL6 736 aa37.26■■■■□ 3.56
HOXB3-201ENST00000311626 CARMIL1Q5VZK9 1371 aa37.25■■■■□ 3.55
HOXB3-201ENST00000311626 CCNB3Q8WWL7 1395 aa37.23■■■■□ 3.55
HOXB3-201ENST00000311626 PELP1Q8IZL8 1130 aaKnown RBP37.22■■■■□ 3.55
HOXB3-201ENST00000311626 PRDM2Q13029 1718 aa37.2■■■■□ 3.55
HOXB3-201ENST00000311626 ATP1B4Q9UN42 357 aaPredicted RBP37.15■■■■□ 3.54
HOXB3-201ENST00000311626 CLSPNQ9HAW4 1339 aa37.12■■■■□ 3.53
HOXB3-201ENST00000311626 CC2D2AQ9P2K1 1620 aa37.11■■■■□ 3.53
HOXB3-201ENST00000311626 FANCD2Q9BXW9 1451 aa37.04■■■■□ 3.52
HOXB3-201ENST00000311626 RAD54L2Q9Y4B4 1467 aa37.03■■■■□ 3.52
HOXB3-201ENST00000311626 TIAM1Q13009 1591 aa36.98■■■■□ 3.51
HOXB3-201ENST00000311626 FAM50AQ14320 339 aaKnown RBP36.97■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms