Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PRAME-207ENST00000420709 705 ntAPPRIS ALT2 TSL 214.18□□□□□ -0.149e-7■■□□□ 14.3
SF3B1O75533 PRAME-212ENST00000485532 709 ntTSL 313.91□□□□□ -0.189e-7■■□□□ 14.3
SF3B1O75533 PRAME-204ENST00000403441 567 ntAPPRIS ALT2 TSL 313.67□□□□□ -0.229e-7■■□□□ 14.3
SF3B1O75533 PRAME-208ENST00000438888 566 ntAPPRIS ALT2 TSL 413.61□□□□□ -0.239e-7■■□□□ 14.3
SF3B1O75533 PRAME-210ENST00000442481 581 ntTSL 312.9□□□□□ -0.349e-7■■□□□ 14.3
SF3B1O75533 TMBIM6-219ENST00000549471 484 ntTSL 24.93□□□□□ -1.629e-7■■□□□ 14.3
SF3B1O75533 ACTB-213ENST00000493945 1236 ntTSL 516.07■□□□□ 0.161e-7■■□□□ 14.2
SF3B1O75533 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.045e-7■■□□□ 14.2
SF3B1O75533 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.065e-7■■□□□ 14.2
SF3B1O75533 HNRNPH1-223ENST00000514332 2444 ntTSL 214.27□□□□□ -0.135e-7■■□□□ 14.2
SF3B1O75533 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.245e-7■■□□□ 14.2
SF3B1O75533 DDX3X-209ENST00000611968 630 ntTSL 316.9■□□□□ 0.33e-6■■□□□ 14.2
SF3B1O75533 CDC25C-206ENST00000510119 867 ntTSL 316.88■□□□□ 0.293e-6■■□□□ 14.2
SF3B1O75533 DDX3X-212ENST00000616050 818 ntTSL 512.35□□□□□ -0.433e-6■■□□□ 14.2
SF3B1O75533 PTBP2-204ENST00000459735 791 ntTSL 59.95□□□□□ -0.823e-6■■□□□ 14.2
SF3B1O75533 PTBP2-208ENST00000476783 779 ntTSL 1 (best)6.02□□□□□ -1.453e-6■■□□□ 14.2
SF3B1O75533 PTBP2-210ENST00000492905 776 ntTSL 1 (best)6.02□□□□□ -1.453e-6■■□□□ 14.2
SF3B1O75533 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.98□□□□□ -1.773e-6■■□□□ 14.2
SF3B1O75533 CDC25C-205ENST00000504831 536 ntTSL 52.55□□□□□ -23e-6■■□□□ 14.2
SF3B1O75533 BUB1-209ENST00000477481 831 ntTSL 55.1□□□□□ -1.591e-7■■□□□ 14.1
SF3B1O75533 PTBP1-206ENST00000585856 1217 ntTSL 229.4■■■□□ 2.38e-7■■□□□ 14.1
SF3B1O75533 CIRBP-209ENST00000586555 716 ntTSL 222.52■■□□□ 1.22e-7■■□□□ 14.1
SF3B1O75533 CIRBP-220ENST00000588917 1087 ntTSL 221.11■□□□□ 0.972e-7■■□□□ 14.1
SF3B1O75533 CIRBP-245ENST00000621399 1044 ntTSL 1 (best)20.1■□□□□ 0.812e-7■■□□□ 14.1
SF3B1O75533 CIRBP-227ENST00000590188 361 ntTSL 319.71■□□□□ 0.752e-7■■□□□ 14.1
SF3B1O75533 ATP2A2-202ENST00000313432 5575 ntTSL 1 (best)8.83□□□□□ -15e-9■■□□□ 14
SF3B1O75533 HNRNPH1-207ENST00000503105 559 ntTSL 319.41■□□□□ 0.78e-7■■□□□ 14
SF3B1O75533 PUM1-219ENST00000527498 652 ntTSL 33.77□□□□□ -1.812e-6■■□□□ 14
SF3B1O75533 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.41■□□□□ 0.549e-9■■□□□ 14
SF3B1O75533 CFL1-209ENST00000530413 647 ntTSL 1 (best)16.81■□□□□ 0.289e-9■■□□□ 14
SF3B1O75533 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.3■□□□□ 0.049e-9■■□□□ 14
SF3B1O75533 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.618e-7■■□□□ 14
SF3B1O75533 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.938e-7■■□□□ 14
SF3B1O75533 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.018e-7■■□□□ 14
SF3B1O75533 ZNF207-201ENST00000321233 2283 ntTSL 1 (best) BASIC11.7□□□□□ -0.543e-6■■□□□ 13.9
SF3B1O75533 ZNF207-204ENST00000394673 2124 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.943e-6■■□□□ 13.9
SF3B1O75533 ZNF207-202ENST00000342555 1905 ntTSL 5 BASIC8.9□□□□□ -0.993e-6■■□□□ 13.9
SF3B1O75533 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC8.6□□□□□ -1.033e-6■■□□□ 13.9
SF3B1O75533 ZNF207-213ENST00000581531 3560 ntTSL 56□□□□□ -1.453e-6■■□□□ 13.9
SF3B1O75533 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.563e-6■■□□□ 13.9
SF3B1O75533 ZNF207-205ENST00000394679 847 ntTSL 33.17□□□□□ -1.93e-6■■□□□ 13.9
SF3B1O75533 PILRB-209ENST00000455145 902 ntTSL 515.6■□□□□ 0.094e-10■■□□□ 13.9
SF3B1O75533 FDFT1-217ENST00000530337 741 ntTSL 319.63■□□□□ 0.735e-7■■□□□ 13.9
SF3B1O75533 HNRNPH1-210ENST00000504549 980 ntTSL 518.51■□□□□ 0.556e-7■■□□□ 13.9
SF3B1O75533 HNRNPH1-236ENST00000519958 885 ntTSL 513.27□□□□□ -0.296e-7■■□□□ 13.9
SF3B1O75533 HNRNPH1-239ENST00000521173 831 ntTSL 511.75□□□□□ -0.536e-7■■□□□ 13.9
SF3B1O75533 HNRNPH1-205ENST00000502632 1509 ntTSL 215.78■□□□□ 0.124e-7■■□□□ 13.8
SF3B1O75533 HNRNPH1-206ENST00000502904 2913 ntTSL 210.02□□□□□ -0.814e-7■■□□□ 13.8
SF3B1O75533 HNRNPH1-227ENST00000515481 5564 ntTSL 26.4□□□□□ -1.394e-7■■□□□ 13.8
SF3B1O75533 PGK1-203ENST00000476531 960 ntTSL 211.51□□□□□ -0.572e-7■■□□□ 13.8
SF3B1O75533 RPS3-205ENST00000525933 1307 ntTSL 511.54□□□□□ -0.566e-7■■□□□ 13.8
SF3B1O75533 RPS3-204ENST00000525690 421 ntTSL 310.61□□□□□ -0.716e-7■■□□□ 13.8
SF3B1O75533 RPS3-215ENST00000530170 531 ntTSL 59.58□□□□□ -0.886e-7■■□□□ 13.8
SF3B1O75533 RPS25-204ENST00000527853 1462 ntTSL 219.78■□□□□ 0.766e-10■■□□□ 13.8
SF3B1O75533 RPS25-201ENST00000524864 1078 ntTSL 214.98□□□□□ -0.016e-10■■□□□ 13.8
SF3B1O75533 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.016e-10■■□□□ 13.8
SF3B1O75533 RPS25-203ENST00000527791 711 ntTSL 213.83□□□□□ -0.26e-10■■□□□ 13.8
SF3B1O75533 RPS25-206ENST00000532567 508 ntTSL 26.23□□□□□ -1.416e-10■■□□□ 13.8
SF3B1O75533 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.81■□□□□ 0.923e-6■■□□□ 13.8
SF3B1O75533 MATR3-225ENST00000514528 532 ntTSL 418.78■□□□□ 0.63e-6■■□□□ 13.8
SF3B1O75533 MATR3-220ENST00000512876 575 ntTSL 318.5■□□□□ 0.553e-6■■□□□ 13.8
SF3B1O75533 MATR3-222ENST00000513678 444 ntTSL 218.5■□□□□ 0.553e-6■■□□□ 13.8
SF3B1O75533 MATR3-208ENST00000504045 1530 ntTSL 518.46■□□□□ 0.553e-6■■□□□ 13.8
SF3B1O75533 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.43e-6■■□□□ 13.8
SF3B1O75533 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.983e-6■■□□□ 13.8
SF3B1O75533 MATR3-210ENST00000504643 2560 ntTSL 28.61□□□□□ -1.033e-6■■□□□ 13.8
SF3B1O75533 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC7.61□□□□□ -1.193e-6■■□□□ 13.8
SF3B1O75533 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.4□□□□□ -1.393e-6■■□□□ 13.8
SF3B1O75533 MATR3-218ENST00000511978 573 ntTSL 35.42□□□□□ -1.543e-6■■□□□ 13.8
SF3B1O75533 MATR3-214ENST00000509918 377 ntTSL 45.13□□□□□ -1.593e-6■■□□□ 13.8
SF3B1O75533 MATR3-216ENST00000511249 447 ntTSL 44.43□□□□□ -1.73e-6■■□□□ 13.8
SF3B1O75533 MATR3-209ENST00000504311 423 ntTSL 33.16□□□□□ -1.93e-6■■□□□ 13.8
SF3B1O75533 RPL11-203ENST00000458455 721 ntTSL 1 (best)13.39□□□□□ -0.275e-10■■□□□ 13.8
SF3B1O75533 RPL11-205ENST00000482370 879 ntTSL 1 (best)9.72□□□□□ -0.855e-10■■□□□ 13.8
SF3B1O75533 HNRNPH1-248ENST00000524179 598 ntTSL 216.19■□□□□ 0.182e-11■■□□□ 13.8
SF3B1O75533 HNRNPH1-245ENST00000523137 1563 ntTSL 420.01■□□□□ 0.791e-6■■□□□ 13.8
SF3B1O75533 HNRNPH1-213ENST00000505811 1155 ntTSL 516.41■□□□□ 0.221e-6■■□□□ 13.8
SF3B1O75533 HNRNPH1-215ENST00000508103 610 ntTSL 214.84□□□□□ -0.031e-6■■□□□ 13.8
SF3B1O75533 HNRNPH1-214ENST00000506721 602 ntTSL 514.58□□□□□ -0.081e-6■■□□□ 13.8
SF3B1O75533 HNRNPH1-217ENST00000510431 620 ntTSL 214.49□□□□□ -0.091e-6■■□□□ 13.8
SF3B1O75533 HNRNPH1-232ENST00000519056 530 ntTSL 413.36□□□□□ -0.271e-6■■□□□ 13.8
SF3B1O75533 HP1BP3-209ENST00000437575 473 ntTSL 327.75■■■□□ 2.037e-7■■□□□ 13.8
SF3B1O75533 DDX5-204ENST00000577787 838 ntTSL 27.38□□□□□ -1.237e-7■■□□□ 13.8
SF3B1O75533 DDX5-230ENST00000584549 807 ntTSL 27.38□□□□□ -1.237e-7■■□□□ 13.8
SF3B1O75533 DDX5-221ENST00000582326 585 ntTSL 24.19□□□□□ -1.747e-7■■□□□ 13.8
SF3B1O75533 DDX5-222ENST00000583201 556 ntTSL 23.54□□□□□ -1.847e-7■■□□□ 13.8
SF3B1O75533 DDX5-217ENST00000581551 573 ntTSL 22.15□□□□□ -2.077e-7■■□□□ 13.8
SF3B1O75533 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.642e-6■■□□□ 13.7
SF3B1O75533 NUDT4-207ENST00000550056 531 ntTSL 417.28■□□□□ 0.362e-6■■□□□ 13.7
SF3B1O75533 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.012e-6■■□□□ 13.7
SF3B1O75533 NUDT4-203ENST00000546925 569 ntTSL 413.04□□□□□ -0.322e-6■■□□□ 13.7
SF3B1O75533 NUDT4-204ENST00000547014 1419 ntTSL 2 BASIC11.15□□□□□ -0.622e-6■■□□□ 13.7
SF3B1O75533 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC9.68□□□□□ -0.862e-6■■□□□ 13.7
SF3B1O75533 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC8.73□□□□□ -1.012e-6■■□□□ 13.7
SF3B1O75533 RABGGTB-211ENST00000489450 586 ntTSL 52.31□□□□□ -2.041e-6■■□□□ 13.7
SF3B1O75533 TAF1D-204ENST00000525928 1710 ntTSL 27.68□□□□□ -1.181e-7■■□□□ 13.7
SF3B1O75533 TAF1D-222ENST00000546088 1728 ntTSL 36.93□□□□□ -1.31e-7■■□□□ 13.7
SF3B1O75533 TAF1D-210ENST00000529435 1011 ntTSL 55.88□□□□□ -1.471e-7■■□□□ 13.7
SF3B1O75533 TAF1D-215ENST00000530769 4358 ntTSL 25.3□□□□□ -1.561e-7■■□□□ 13.7
SF3B1O75533 TAF1D-214ENST00000530089 1429 ntTSL 33.17□□□□□ -1.91e-7■■□□□ 13.7
Retrieved 100 of 46,956 protein–RNA pairs in 3978.2 ms