RNA–Protein interactions for RNA: ENST00000585856.2

PTBP1-206, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 2

Gene PTBP1, Length 1,217 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-206ENST00000585856 NISCHQ9Y2I1 1504 aa66.74■■■■■ 8.27
PTBP1-206ENST00000585856 CCDC180Q9P1Z9 1646 aa60.05■■■■■ 7.2
PTBP1-206ENST00000585856 ABCC9O60706 1549 aa59.85■■■■■ 7.17
PTBP1-206ENST00000585856 RB1CC1Q8TDY2 1594 aa57.11■■■■■ 6.73
PTBP1-206ENST00000585856 NACADO15069 1562 aa56.72■■■■■ 6.67
PTBP1-206ENST00000585856 DCAF8L2P0C7V8 631 aa56.19■■■■■ 6.59
PTBP1-206ENST00000585856 DNAJC5BQ9UF47 199 aa56.07■■■■■ 6.57
PTBP1-206ENST00000585856 MYO15BQ96JP2 1530 aa55.97■■■■■ 6.55
PTBP1-206ENST00000585856 UNC13AQ9UPW8 1703 aa55.85■■■■■ 6.53
PTBP1-206ENST00000585856 PABPN1Q86U42 306 aaKnown RBP eCLIP55.64■■■■■ 6.5
PTBP1-206ENST00000585856 BICRAQ9NZM4 1560 aa55.38■■■■■ 6.46
PTBP1-206ENST00000585856 ZCCHC6Q5VYS8 1495 aaKnown RBP55.32■■■■■ 6.45
PTBP1-206ENST00000585856 DCAF1Q9Y4B6 1507 aa55.22■■■■■ 6.43
PTBP1-206ENST00000585856 SHROOM4Q9ULL8 1493 aa54.77■■■■■ 6.36
PTBP1-206ENST00000585856 SCRIBQ14160 1630 aa54.56■■■■■ 6.33
PTBP1-206ENST00000585856 CC2D2AQ9P2K1 1620 aa54.15■■■■■ 6.26
PTBP1-206ENST00000585856 EIF4G1Q04637 1599 aaKnown RBP54.04■■■■■ 6.24
PTBP1-206ENST00000585856 CECR2Q9BXF3 1484 aa53.96■■■■■ 6.23
PTBP1-206ENST00000585856 NCAPD3P42695 1498 aa52.31■■■■■ 5.96
PTBP1-206ENST00000585856 ATAD2BQ9ULI0 1458 aa52.11■■■■■ 5.93
PTBP1-206ENST00000585856 SMARCA4P51532 1647 aa52.11■■■■■ 5.93
PTBP1-206ENST00000585856 SMARCA2P51531 1590 aa52.05■■■■■ 5.92
PTBP1-206ENST00000585856 HMGXB3Q12766 1538 aa51.98■■■■■ 5.91
PTBP1-206ENST00000585856 BAZ1AQ9NRL2 1556 aaPredicted RBP51.86■■■■■ 5.89
PTBP1-206ENST00000585856 ERCC6Q03468 1493 aa51.74■■■■■ 5.87
PTBP1-206ENST00000585856 CUX2O14529 1486 aa51.73■■■■■ 5.87
PTBP1-206ENST00000585856 PEG3Q9GZU2 1588 aa51.65■■■■■ 5.86
PTBP1-206ENST00000585856 BAZ1BQ9UIG0 1483 aaKnown RBP51.63■■■■■ 5.86
PTBP1-206ENST00000585856 DNAJC5Q9H3Z4 198 aa51.62■■■■■ 5.85
PTBP1-206ENST00000585856 NESP48681 1621 aa51.4■■■■■ 5.82
PTBP1-206ENST00000585856 MROH2BQ7Z745 1585 aa51.37■■■■■ 5.81
PTBP1-206ENST00000585856 LAMC3Q9Y6N6 1575 aa51.2■■■■■ 5.79
PTBP1-206ENST00000585856 THOC2Q8NI27 1593 aaKnown RBP51■■■■■ 5.75
PTBP1-206ENST00000585856 KIF21AQ7Z4S6 1674 aa50.86■■■■■ 5.73
PTBP1-206ENST00000585856 PDS5BQ9NTI5 1447 aa50.85■■■■■ 5.73
PTBP1-206ENST00000585856 WIZO95785 1651 aa50.79■■■■■ 5.72
PTBP1-206ENST00000585856 CADPSQ9ULU8 1353 aa50.68■■■■■ 5.7
PTBP1-206ENST00000585856 MRC2Q9UBG0 1479 aa50.39■■■■■ 5.66
PTBP1-206ENST00000585856 WDR62O43379 1518 aa50.31■■■■■ 5.64
PTBP1-206ENST00000585856 RSF1Q96T23 1441 aaPredicted RBP50.29■■■■■ 5.64
PTBP1-206ENST00000585856 CEP164Q9UPV0 1460 aa50.2■■■■■ 5.63
PTBP1-206ENST00000585856 TOP2AP11388 1531 aaKnown RBP50.19■■■■■ 5.62
PTBP1-206ENST00000585856 CFTRP13569 1480 aa50.13■■■■■ 5.62
PTBP1-206ENST00000585856 FANCD2Q9BXW9 1451 aa50.11■■■■■ 5.61
PTBP1-206ENST00000585856 PRDM2Q13029 1718 aa49.8■■■■■ 5.56
PTBP1-206ENST00000585856 URB2Q14146 1524 aaKnown RBP49.68■■■■■ 5.54
PTBP1-206ENST00000585856 CCDC88BA6NC98 1476 aa49.55■■■■■ 5.52
PTBP1-206ENST00000585856 OSCARQ8IYS5 282 aa49.28■■■■■ 5.48
PTBP1-206ENST00000585856 TRIM41Q8WV44 630 aa49.27■■■■■ 5.48
PTBP1-206ENST00000585856 IFT140Q96RY7 1462 aa49.2■■■■■ 5.47
PTBP1-206ENST00000585856 TOPBP1Q92547 1522 aa49.17■■■■■ 5.46
PTBP1-206ENST00000585856 ABCC8Q09428 1581 aa49.15■■■■■ 5.46
PTBP1-206ENST00000585856 ZNF608Q9ULD9 1512 aaPredicted RBP49.04■■■■■ 5.44
PTBP1-206ENST00000585856 DNMBPQ6XZF7 1577 aa49.03■■■■■ 5.44
PTBP1-206ENST00000585856 EIF4G3O43432 1585 aaKnown RBP48.87■■■■■ 5.41
PTBP1-206ENST00000585856 TARBP1Q13395 1621 aaKnown RBP48.77■■■■■ 5.4
PTBP1-206ENST00000585856 RIMBP3CA6NJZ7 1639 aa48.69■■■■■ 5.38
PTBP1-206ENST00000585856 RIMBP3BA6NNM3 1639 aa48.69■■■■■ 5.38
PTBP1-206ENST00000585856 RIMBP3Q9UFD9 1639 aa48.69■■■■■ 5.38
PTBP1-206ENST00000585856 POLA1P09884 1462 aaPredicted RBP48.65■■■■■ 5.38
PTBP1-206ENST00000585856 AQRO60306 1485 aaKnown RBP eCLIP48.58■■■■■ 5.372e-10■■□□□ 14.5
PTBP1-206ENST00000585856 CHD1O14646 1710 aa48.55■■■■■ 5.36
PTBP1-206ENST00000585856 ARHGEF11O15085 1522 aa48.52■■■■■ 5.36
PTBP1-206ENST00000585856 RAD54L2Q9Y4B4 1467 aa48.42■■■■■ 5.34
PTBP1-206ENST00000585856 SOGA1O94964 1423 aa48.41■■■■■ 5.34
PTBP1-206ENST00000585856 WDR97A6NE52 1622 aa48.39■■■■■ 5.34
PTBP1-206ENST00000585856 FGD5Q6ZNL6 1462 aa48.35■■■■■ 5.33
PTBP1-206ENST00000585856 CUX1P39880 1505 aa48.29■■■■■ 5.32
PTBP1-206ENST00000585856 TDRD9Q8NDG6 1382 aaKnown RBP48.26■■■■■ 5.32
PTBP1-206ENST00000585856 FBLN2P98095 1184 aa48.25■■■■■ 5.31
PTBP1-206ENST00000585856 SNAPC4Q5SXM2 1469 aa48.13■■■■■ 5.3
PTBP1-206ENST00000585856 MAGI1Q96QZ7 1491 aaPredicted RBP48.09■■■■■ 5.29
PTBP1-206ENST00000585856 CYB5RLQ6IPT4 315 aa48.07■■■■■ 5.29
PTBP1-206ENST00000585856 GRIN2BQ13224 1484 aa48.04■■■■■ 5.28
PTBP1-206ENST00000585856 ARAP1Q96P48 1450 aa48■■■■■ 5.27
PTBP1-206ENST00000585856 SYNJ1O43426 1573 aa47.96■■■■■ 5.27
PTBP1-206ENST00000585856 SUPT5HO00267 1087 aaKnown RBP47.95■■■■■ 5.27
PTBP1-206ENST00000585856 CLASP1Q7Z460 1538 aa47.95■■■■■ 5.27
PTBP1-206ENST00000585856 CHMP7Q8WUX9 453 aaPredicted RBP47.94■■■■■ 5.26
PTBP1-206ENST00000585856 PBRM1Q86U86 1689 aa47.93■■■■■ 5.26
PTBP1-206ENST00000585856 SYNJ2O15056 1496 aa47.9■■■■■ 5.26
PTBP1-206ENST00000585856 GAPVD1Q14C86 1478 aa47.86■■■■■ 5.25
PTBP1-206ENST00000585856 ABCA10Q8WWZ4 1543 aa47.83■■■■■ 5.25
PTBP1-206ENST00000585856 ABCA5Q8WWZ7 1642 aa47.78■■■■■ 5.24
PTBP1-206ENST00000585856 WRNQ14191 1432 aaPredicted RBP eCLIP47.62■■■■■ 5.21
PTBP1-206ENST00000585856 BIVM-ERCC5R4GMW8 1640 aa47.61■■■■■ 5.21
PTBP1-206ENST00000585856 TOP2BQ02880 1626 aa47.58■■■■■ 5.21
PTBP1-206ENST00000585856 TRHP20396 242 aaPredicted RBP47.55■■■■■ 5.2
PTBP1-206ENST00000585856 GRIN2AQ12879 1464 aa47.42■■■■■ 5.18
PTBP1-206ENST00000585856 ADAMTS12P58397 1594 aa47.41■■■■■ 5.18
PTBP1-206ENST00000585856 ERICH3Q5RHP9 1530 aa47.27■■■■■ 5.16
PTBP1-206ENST00000585856 FHAD1B1AJZ9 1412 aa47.26■■■■■ 5.16
PTBP1-206ENST00000585856 NUP160Q12769 1436 aa47.26■■■■■ 5.16
PTBP1-206ENST00000585856 CEP170Q5SW79 1584 aa47.24■■■■■ 5.15
PTBP1-206ENST00000585856 SHROOM2Q13796 1616 aa47.12■■■■■ 5.13
PTBP1-206ENST00000585856 ERCC6L2Q5T890 1561 aa47.11■■■■■ 5.13
PTBP1-206ENST00000585856 PRG4Q92954 1404 aaPredicted RBP46.77■■■■■ 5.08
PTBP1-206ENST00000585856 RUSC2Q8N2Y8 1516 aa46.76■■■■■ 5.08
PTBP1-206ENST00000585856 JPH4Q96JJ6 628 aa46.72■■■■■ 5.07
PTBP1-206ENST00000585856 CUL7Q14999 1698 aa46.62■■■■■ 5.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms