RNA–Protein interactions for RNA: ENST00000476531.1

PGK1-203, Transcript of phosphoglycerate kinase 1, humanhuman

TSL 2

Gene PGK1, Length 960 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1-203ENST00000476531 NISCHQ9Y2I1 1504 aa26.4■■□□□ 1.82
PGK1-203ENST00000476531 ABCC9O60706 1549 aa23.94■■□□□ 1.42
PGK1-203ENST00000476531 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
PGK1-203ENST00000476531 DNAJC5BQ9UF47 199 aa22.73■■□□□ 1.23
PGK1-203ENST00000476531 RB1CC1Q8TDY2 1594 aa22.69■■□□□ 1.22
PGK1-203ENST00000476531 NACADO15069 1562 aa22.5■■□□□ 1.19
PGK1-203ENST00000476531 DCAF8L2P0C7V8 631 aa22.3■■□□□ 1.16
PGK1-203ENST00000476531 PABPN1Q86U42 306 aaKnown RBP eCLIP22.26■■□□□ 1.15
PGK1-203ENST00000476531 UNC13AQ9UPW8 1703 aa22.16■■□□□ 1.14
PGK1-203ENST00000476531 MYO15BQ96JP2 1530 aa22.16■■□□□ 1.14
PGK1-203ENST00000476531 BICRAQ9NZM4 1560 aa22.08■■□□□ 1.13
PGK1-203ENST00000476531 ZCCHC6Q5VYS8 1495 aaKnown RBP21.85■■□□□ 1.09
PGK1-203ENST00000476531 DCAF1Q9Y4B6 1507 aa21.8■■□□□ 1.08
PGK1-203ENST00000476531 SHROOM4Q9ULL8 1493 aa21.75■■□□□ 1.07
PGK1-203ENST00000476531 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
PGK1-203ENST00000476531 CC2D2AQ9P2K1 1620 aa21.61■■□□□ 1.05
PGK1-203ENST00000476531 CECR2Q9BXF3 1484 aa21.58■■□□□ 1.05
PGK1-203ENST00000476531 EIF4G1Q04637 1599 aaKnown RBP21.53■■□□□ 1.04
PGK1-203ENST00000476531 DNAJC5Q9H3Z4 198 aa21.23■□□□□ 0.99
PGK1-203ENST00000476531 NCAPD3P42695 1498 aa20.8■□□□□ 0.92
PGK1-203ENST00000476531 ATAD2BQ9ULI0 1458 aa20.71■□□□□ 0.91
PGK1-203ENST00000476531 CUX2O14529 1486 aa20.7■□□□□ 0.9
PGK1-203ENST00000476531 ERCC6Q03468 1493 aa20.64■□□□□ 0.89
PGK1-203ENST00000476531 SMARCA4P51532 1647 aa20.63■□□□□ 0.89
PGK1-203ENST00000476531 SMARCA2P51531 1590 aa20.61■□□□□ 0.89
PGK1-203ENST00000476531 HMGXB3Q12766 1538 aa20.61■□□□□ 0.89
PGK1-203ENST00000476531 NESP48681 1621 aa20.53■□□□□ 0.88
PGK1-203ENST00000476531 BAZ1AQ9NRL2 1556 aaPredicted RBP20.49■□□□□ 0.87
PGK1-203ENST00000476531 BAZ1BQ9UIG0 1483 aaKnown RBP20.47■□□□□ 0.87
PGK1-203ENST00000476531 PEG3Q9GZU2 1588 aa20.44■□□□□ 0.86
PGK1-203ENST00000476531 MROH2BQ7Z745 1585 aa20.35■□□□□ 0.85
PGK1-203ENST00000476531 THOC2Q8NI27 1593 aaKnown RBP20.35■□□□□ 0.85
PGK1-203ENST00000476531 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.84
PGK1-203ENST00000476531 KIF21AQ7Z4S6 1674 aa20.22■□□□□ 0.83
PGK1-203ENST00000476531 PDS5BQ9NTI5 1447 aa20.21■□□□□ 0.83
PGK1-203ENST00000476531 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
PGK1-203ENST00000476531 WIZO95785 1651 aa20.07■□□□□ 0.8
PGK1-203ENST00000476531 MRC2Q9UBG0 1479 aa20.07■□□□□ 0.8
PGK1-203ENST00000476531 TRIM41Q8WV44 630 aa20.07■□□□□ 0.8
PGK1-203ENST00000476531 WDR62O43379 1518 aa20.03■□□□□ 0.8
PGK1-203ENST00000476531 CEP164Q9UPV0 1460 aa19.94■□□□□ 0.78
PGK1-203ENST00000476531 FANCD2Q9BXW9 1451 aa19.91■□□□□ 0.78
PGK1-203ENST00000476531 CFTRP13569 1480 aa19.88■□□□□ 0.77
PGK1-203ENST00000476531 RSF1Q96T23 1441 aaPredicted RBP19.86■□□□□ 0.77
PGK1-203ENST00000476531 TOP2AP11388 1531 aaKnown RBP19.82■□□□□ 0.76
PGK1-203ENST00000476531 URB2Q14146 1524 aaKnown RBP19.78■□□□□ 0.76
PGK1-203ENST00000476531 OSCARQ8IYS5 282 aa19.71■□□□□ 0.75
PGK1-203ENST00000476531 PRDM2Q13029 1718 aa19.62■□□□□ 0.73
PGK1-203ENST00000476531 CCDC88BA6NC98 1476 aa19.6■□□□□ 0.73
PGK1-203ENST00000476531 AEBP2Q6ZN18 517 aaPredicted RBP19.6■□□□□ 0.73
PGK1-203ENST00000476531 ZNF608Q9ULD9 1512 aaPredicted RBP19.56■□□□□ 0.72
PGK1-203ENST00000476531 IFT140Q96RY7 1462 aa19.56■□□□□ 0.72
PGK1-203ENST00000476531 TOPBP1Q92547 1522 aa19.52■□□□□ 0.72
PGK1-203ENST00000476531 RIMBP3CA6NJZ7 1639 aa19.49■□□□□ 0.71
PGK1-203ENST00000476531 RIMBP3BA6NNM3 1639 aa19.49■□□□□ 0.71
PGK1-203ENST00000476531 RIMBP3Q9UFD9 1639 aa19.49■□□□□ 0.71
PGK1-203ENST00000476531 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
PGK1-203ENST00000476531 DNMBPQ6XZF7 1577 aa19.43■□□□□ 0.7
PGK1-203ENST00000476531 EIF4G3O43432 1585 aaKnown RBP19.42■□□□□ 0.7
PGK1-203ENST00000476531 ARHGEF11O15085 1522 aa19.41■□□□□ 0.7
PGK1-203ENST00000476531 TARBP1Q13395 1621 aaKnown RBP19.36■□□□□ 0.69
PGK1-203ENST00000476531 AQRO60306 1485 aaKnown RBP eCLIP19.35■□□□□ 0.691e-10■■■■■ 56.1
PGK1-203ENST00000476531 POLA1P09884 1462 aaPredicted RBP19.31■□□□□ 0.68
PGK1-203ENST00000476531 CHD1O14646 1710 aa19.29■□□□□ 0.68
PGK1-203ENST00000476531 CYB5RLQ6IPT4 315 aa19.26■□□□□ 0.67
PGK1-203ENST00000476531 RAD54L2Q9Y4B4 1467 aa19.25■□□□□ 0.67
PGK1-203ENST00000476531 ARAP1Q96P48 1450 aa19.22■□□□□ 0.67
PGK1-203ENST00000476531 SOGA1O94964 1423 aa19.21■□□□□ 0.67
PGK1-203ENST00000476531 FBLN2P98095 1184 aa19.21■□□□□ 0.67
PGK1-203ENST00000476531 TDRD9Q8NDG6 1382 aaKnown RBP19.2■□□□□ 0.66
PGK1-203ENST00000476531 TRHP20396 242 aaPredicted RBP19.17■□□□□ 0.66
PGK1-203ENST00000476531 FGD5Q6ZNL6 1462 aa19.16■□□□□ 0.66
PGK1-203ENST00000476531 SNAPC4Q5SXM2 1469 aa19.16■□□□□ 0.66
PGK1-203ENST00000476531 WDR97A6NE52 1622 aa19.14■□□□□ 0.65
PGK1-203ENST00000476531 CUX1P39880 1505 aa19.13■□□□□ 0.65
PGK1-203ENST00000476531 CLASP1Q7Z460 1538 aa19.11■□□□□ 0.65
PGK1-203ENST00000476531 MAGI1Q96QZ7 1491 aaPredicted RBP19.08■□□□□ 0.64
PGK1-203ENST00000476531 GRIN2BQ13224 1484 aa19.07■□□□□ 0.64
PGK1-203ENST00000476531 CHMP7Q8WUX9 453 aaPredicted RBP19.05■□□□□ 0.64
PGK1-203ENST00000476531 SYNJ1O43426 1573 aa19.05■□□□□ 0.64
PGK1-203ENST00000476531 SYNJ2O15056 1496 aa19.03■□□□□ 0.64
PGK1-203ENST00000476531 GAPVD1Q14C86 1478 aa18.97■□□□□ 0.63
PGK1-203ENST00000476531 PBRM1Q86U86 1689 aa18.95■□□□□ 0.62
PGK1-203ENST00000476531 ABCA10Q8WWZ4 1543 aa18.94■□□□□ 0.62
PGK1-203ENST00000476531 ABCA5Q8WWZ7 1642 aa18.93■□□□□ 0.62
PGK1-203ENST00000476531 GRIN2AQ12879 1464 aa18.82■□□□□ 0.6
PGK1-203ENST00000476531 ERCC6L2Q5T890 1561 aa18.81■□□□□ 0.6
PGK1-203ENST00000476531 WRNQ14191 1432 aaPredicted RBP eCLIP18.81■□□□□ 0.6
PGK1-203ENST00000476531 SUPT5HO00267 1087 aaKnown RBP18.8■□□□□ 0.6
PGK1-203ENST00000476531 ADAMTS12P58397 1594 aa18.8■□□□□ 0.6
PGK1-203ENST00000476531 NUP160Q12769 1436 aa18.79■□□□□ 0.6
PGK1-203ENST00000476531 CEP170Q5SW79 1584 aa18.77■□□□□ 0.6
PGK1-203ENST00000476531 TOP2BQ02880 1626 aa18.76■□□□□ 0.59
PGK1-203ENST00000476531 BIVM-ERCC5R4GMW8 1640 aa18.76■□□□□ 0.59
PGK1-203ENST00000476531 FHAD1B1AJZ9 1412 aa18.73■□□□□ 0.59
PGK1-203ENST00000476531 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
PGK1-203ENST00000476531 SHROOM2Q13796 1616 aa18.71■□□□□ 0.59
PGK1-203ENST00000476531 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
PGK1-203ENST00000476531 PRG4Q92954 1404 aaPredicted RBP18.59■□□□□ 0.57
PGK1-203ENST00000476531 JPH4Q96JJ6 628 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms