Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.29■■□□□ 1.642e-6■■■□□ 14.7
SF3B1O75533 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.22e-6■■■□□ 14.7
SF3B1O75533 TMEM165-205ENST00000508404 1657 ntTSL 222.4■■□□□ 1.182e-6■■■□□ 14.7
SF3B1O75533 AC004687.1-201ENST00000579003 1625 ntBASIC23.62■■□□□ 1.372e-6■■■□□ 14.7
SF3B1O75533 HNRNPA2B1-207ENST00000495810 482 ntTSL 211.51□□□□□ -0.573e-7■■■□□ 14.7
SF3B1O75533 TPTEP1-202ENST00000400593 1430 ntTSL 1 (best)17.06■□□□□ 0.323e-6■■■□□ 14.6
SF3B1O75533 TPTEP1-204ENST00000426585 5725 ntTSL 1 (best)12.86□□□□□ -0.353e-6■■■□□ 14.6
SF3B1O75533 MATR3-235ENST00000506147 580 ntTSL 416.94■□□□□ 0.32e-6■■■□□ 14.6
SF3B1O75533 MATR3-238ENST00000512107 579 ntTSL 415.61■□□□□ 0.092e-6■■■□□ 14.6
SF3B1O75533 MATR3-236ENST00000509644 750 ntTSL 314.32□□□□□ -0.122e-6■■■□□ 14.6
SF3B1O75533 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC13.47□□□□□ -0.252e-6■■■□□ 14.6
SF3B1O75533 MATR3-237ENST00000509990 3249 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.432e-6■■■□□ 14.6
SF3B1O75533 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.072e-6■■■□□ 14.6
SF3B1O75533 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC8.27□□□□□ -1.092e-6■■■□□ 14.6
SF3B1O75533 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.66□□□□□ -1.52e-6■■■□□ 14.6
SF3B1O75533 RBM39-215ENST00000442447 644 ntTSL 217.72■□□□□ 0.431e-6■■■□□ 14.6
SF3B1O75533 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.46■□□□□ 0.381e-6■■■□□ 14.6
SF3B1O75533 RBM39-204ENST00000374038 1026 ntTSL 516.94■□□□□ 0.31e-6■■■□□ 14.6
SF3B1O75533 RBM39-219ENST00000453310 1068 ntTSL 216.94■□□□□ 0.31e-6■■■□□ 14.6
SF3B1O75533 RBM39-213ENST00000433027 611 ntTSL 516.38■□□□□ 0.211e-6■■■□□ 14.6
SF3B1O75533 HNRNPH1-231ENST00000519033 832 ntTSL 318.51■□□□□ 0.558e-8■■■□□ 14.6
SF3B1O75533 SETD5-214ENST00000463180 685 ntTSL 221.64■■□□□ 1.053e-6■■□□□ 14.5
SF3B1O75533 SETD5-221ENST00000478475 477 ntTSL 48.52□□□□□ -1.053e-6■■□□□ 14.5
SF3B1O75533 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.525e-7■■□□□ 14.5
SF3B1O75533 CDK1-203ENST00000395284 1913 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.985e-7■■□□□ 14.5
SF3B1O75533 NPEPPS-212ENST00000528565 558 ntTSL 38.91□□□□□ -0.985e-7■■□□□ 14.5
SF3B1O75533 SCAF4-204ENST00000467731 2976 ntTSL 1 (best)7.32□□□□□ -1.245e-7■■□□□ 14.5
SF3B1O75533 SCAF4-205ENST00000472318 796 ntTSL 37.13□□□□□ -1.275e-7■■□□□ 14.5
SF3B1O75533 CDK1-207ENST00000519078 723 ntTSL 37.04□□□□□ -1.285e-7■■□□□ 14.5
SF3B1O75533 TMEM41B-206ENST00000533867 966 ntTSL 25.48□□□□□ -1.535e-7■■□□□ 14.5
SF3B1O75533 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.39□□□□□ -1.875e-7■■□□□ 14.5
SF3B1O75533 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.41□□□□□ -2.025e-7■■□□□ 14.5
SF3B1O75533 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.92□□□□□ -2.15e-7■■□□□ 14.5
SF3B1O75533 CDK1-206ENST00000487784 598 ntTSL 51.83□□□□□ -2.125e-7■■□□□ 14.5
SF3B1O75533 HNRNPH1-240ENST00000521720 539 ntTSL 318.07■□□□□ 0.481e-7■■□□□ 14.5
SF3B1O75533 HNRNPH1-246ENST00000523449 793 ntTSL 314.43□□□□□ -0.11e-7■■□□□ 14.5
SF3B1O75533 RAP1B-215ENST00000535492 509 ntTSL 426.26■■□□□ 1.796e-7■■□□□ 14.5
SF3B1O75533 RAP1B-218ENST00000538877 550 ntTSL 426.26■■□□□ 1.796e-7■■□□□ 14.5
SF3B1O75533 RAP1B-233ENST00000545720 552 ntTSL 526.26■■□□□ 1.796e-7■■□□□ 14.5
SF3B1O75533 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.11■■□□□ 1.456e-7■■□□□ 14.5
SF3B1O75533 RAP1B-217ENST00000538283 591 ntTSL 424.02■■□□□ 1.446e-7■■□□□ 14.5
SF3B1O75533 RAP1B-213ENST00000501412 1488 ntTSL 223.67■■□□□ 1.386e-7■■□□□ 14.5
SF3B1O75533 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.36e-7■■□□□ 14.5
SF3B1O75533 RAP1B-209ENST00000460800 755 ntTSL 322.53■■□□□ 1.26e-7■■□□□ 14.5
SF3B1O75533 RAP1B-214ENST00000534899 606 ntTSL 422.53■■□□□ 1.26e-7■■□□□ 14.5
SF3B1O75533 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.53■■□□□ 1.26e-7■■□□□ 14.5
SF3B1O75533 RAP1B-212ENST00000489473 561 ntTSL 421.84■■□□□ 1.096e-7■■□□□ 14.5
SF3B1O75533 RAP1B-219ENST00000538980 587 ntTSL 321.84■■□□□ 1.096e-7■■□□□ 14.5
SF3B1O75533 RAP1B-223ENST00000541167 561 ntTSL 421.84■■□□□ 1.096e-7■■□□□ 14.5
SF3B1O75533 RAP1B-206ENST00000425247 855 ntTSL 521.79■■□□□ 1.086e-7■■□□□ 14.5
SF3B1O75533 RAP1B-222ENST00000540781 571 ntTSL 421.79■■□□□ 1.086e-7■■□□□ 14.5
SF3B1O75533 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.076e-7■■□□□ 14.5
SF3B1O75533 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.26■□□□□ 0.996e-7■■□□□ 14.5
SF3B1O75533 RAP1B-205ENST00000422358 468 ntTSL 421.26■□□□□ 0.996e-7■■□□□ 14.5
SF3B1O75533 RAP1B-208ENST00000453560 530 ntTSL 421.26■□□□□ 0.996e-7■■□□□ 14.5
SF3B1O75533 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.26■□□□□ 0.996e-7■■□□□ 14.5
SF3B1O75533 RAP1B-227ENST00000542018 633 ntTSL 420.94■□□□□ 0.946e-7■■□□□ 14.5
SF3B1O75533 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.33■□□□□ 0.856e-7■■□□□ 14.5
SF3B1O75533 RAP1B-225ENST00000541386 480 ntTSL 419.9■□□□□ 0.786e-7■■□□□ 14.5
SF3B1O75533 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.9■□□□□ 0.786e-7■■□□□ 14.5
SF3B1O75533 RAP1B-232ENST00000545270 640 ntTSL 319.9■□□□□ 0.786e-7■■□□□ 14.5
SF3B1O75533 RAP1B-210ENST00000463493 781 ntTSL 418.26■□□□□ 0.516e-7■■□□□ 14.5
SF3B1O75533 RAP1B-211ENST00000485252 312 ntTSL 518.04■□□□□ 0.486e-7■■□□□ 14.5
SF3B1O75533 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.016e-7■■□□□ 14.5
SF3B1O75533 RAP1B-230ENST00000543697 734 ntTSL 3 BASIC7.99□□□□□ -1.136e-7■■□□□ 14.5
SF3B1O75533 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.666e-7■■□□□ 14.5
SF3B1O75533 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.73□□□□□ -1.976e-7■■□□□ 14.5
SF3B1O75533 HNRNPH1-211ENST00000504779 792 ntTSL 514.63□□□□□ -0.079e-7■■□□□ 14.5
SF3B1O75533 LRRC61-203ENST00000463441 667 ntTSL 226.91■■□□□ 1.94e-6■■□□□ 14.4
SF3B1O75533 G3BP1-212ENST00000522761 1763 ntTSL 218.37■□□□□ 0.534e-6■■□□□ 14.4
SF3B1O75533 G3BP1-208ENST00000520177 2700 ntTSL 1 (best)15.39■□□□□ 0.054e-6■■□□□ 14.4
SF3B1O75533 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.94□□□□□ -0.024e-6■■□□□ 14.4
SF3B1O75533 XPOT-204ENST00000540203 548 ntTSL 413.45□□□□□ -0.264e-6■■□□□ 14.4
SF3B1O75533 G3BP1-204ENST00000517947 558 ntTSL 412.77□□□□□ -0.374e-6■■□□□ 14.4
SF3B1O75533 G3BP1-210ENST00000522367 580 ntTSL 312.77□□□□□ -0.374e-6■■□□□ 14.4
SF3B1O75533 PRRC2B-208ENST00000465931 5366 ntTSL 212.73□□□□□ -0.374e-6■■□□□ 14.4
SF3B1O75533 G3BP1-211ENST00000522666 783 ntTSL 312.69□□□□□ -0.384e-6■■□□□ 14.4
SF3B1O75533 PRRC2B-201ENST00000320547 4950 ntTSL 212.46□□□□□ -0.414e-6■■□□□ 14.4
SF3B1O75533 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.454e-6■■□□□ 14.4
SF3B1O75533 ACSS2-206ENST00000468550 547 ntTSL 511.82□□□□□ -0.524e-6■■□□□ 14.4
SF3B1O75533 XPOT-202ENST00000400935 984 ntTSL 26.57□□□□□ -1.364e-6■■□□□ 14.4
SF3B1O75533 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.484e-6■■□□□ 14.4
SF3B1O75533 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)12.3□□□□□ -0.442e-6■■□□□ 14.4
SF3B1O75533 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.442e-6■■□□□ 14.4
SF3B1O75533 CSNK1D-218ENST00000581655 549 ntTSL 414.03□□□□□ -0.162e-8■■□□□ 14.4
SF3B1O75533 G2E3-212ENST00000553504 3796 ntTSL 5 BASIC13.24□□□□□ -0.292e-8■■□□□ 14.4
SF3B1O75533 SPAG5-209ENST00000580406 937 ntTSL 39.13□□□□□ -0.952e-8■■□□□ 14.4
SF3B1O75533 G2E3-206ENST00000548934 640 ntTSL 34.83□□□□□ -1.642e-8■■□□□ 14.4
SF3B1O75533 G2E3-211ENST00000552515 367 ntTSL 32.91□□□□□ -1.942e-8■■□□□ 14.4
SF3B1O75533 SPAG5-205ENST00000578230 335 ntTSL 31.53□□□□□ -2.162e-8■■□□□ 14.4
SF3B1O75533 RBM39-207ENST00000412738 1018 ntTSL 315.14■□□□□ 0.013e-7■■□□□ 14.3
SF3B1O75533 RBM39-209ENST00000416529 594 ntTSL 38.28□□□□□ -1.083e-7■■□□□ 14.3
SF3B1O75533 RBM39-220ENST00000455343 441 ntTSL 54.07□□□□□ -1.763e-7■■□□□ 14.3
SF3B1O75533 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-6■■□□□ 14.3
SF3B1O75533 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.91e-6■■□□□ 14.3
SF3B1O75533 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.911e-6■■□□□ 14.3
SF3B1O75533 HNRNPH1-224ENST00000514731 1371 ntTSL 214.88□□□□□ -0.037e-7■■□□□ 14.3
SF3B1O75533 PRAME-209ENST00000439106 891 ntAPPRIS ALT2 TSL 315.17■□□□□ 0.029e-7■■□□□ 14.3
SF3B1O75533 PRAME-211ENST00000476336 589 ntTSL 214.58□□□□□ -0.089e-7■■□□□ 14.3
SF3B1O75533 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.139e-7■■□□□ 14.3
Retrieved 100 of 46,956 protein–RNA pairs in 3018.4 ms