RNA–Protein interactions for RNA: ENST00000416529.5

RBM39-209, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 594 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-209ENST00000416529 AEBP2Q6ZN18 517 aaPredicted RBP25.12■■□□□ 1.61
RBM39-209ENST00000416529 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
RBM39-209ENST00000416529 SENP3Q9H4L4 574 aaPredicted RBP21.63■■□□□ 1.05
RBM39-209ENST00000416529 PHF23Q9BUL5 403 aaPredicted RBP21.26■□□□□ 0.99
RBM39-209ENST00000416529 FOXD1Q16676 465 aa19.99■□□□□ 0.79
RBM39-209ENST00000416529 PLPPR3Q6T4P5 718 aa19.43■□□□□ 0.7
RBM39-209ENST00000416529 MSH5O43196 834 aa18.83■□□□□ 0.6
RBM39-209ENST00000416529 PIAS4Q8N2W9 510 aaPredicted RBP18.79■□□□□ 0.6
RBM39-209ENST00000416529 PPP6R1Q9UPN7 881 aa18.71■□□□□ 0.59
RBM39-209ENST00000416529 ADRA2BP18089 450 aa18.7■□□□□ 0.58
RBM39-209ENST00000416529 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
RBM39-209ENST00000416529 POTEDQ86YR6 584 aa17.98■□□□□ 0.47
RBM39-209ENST00000416529 SCAF1Q9H7N4 1312 aaKnown RBP17.38■□□□□ 0.37
RBM39-209ENST00000416529 DMRT2Q9Y5R5 561 aa17.12■□□□□ 0.33
RBM39-209ENST00000416529 MAPK8IP2Q13387 824 aaPredicted RBP17.09■□□□□ 0.33
RBM39-209ENST00000416529 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
RBM39-209ENST00000416529 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
RBM39-209ENST00000416529 HOXD11P31277 338 aaPredicted RBP16.55■□□□□ 0.24
RBM39-209ENST00000416529 NCBP3Q53F19 620 aaKnown RBP16.51■□□□□ 0.23
RBM39-209ENST00000416529 RNF216Q9NWF9 866 aaPredicted RBP16.5■□□□□ 0.23
RBM39-209ENST00000416529 DCAF8L1A6NGE4 600 aa16.4■□□□□ 0.22
RBM39-209ENST00000416529 CCDC180Q9P1Z9 1646 aa16.16■□□□□ 0.18
RBM39-209ENST00000416529 NPM3O75607 178 aaKnown RBP16.09■□□□□ 0.17
RBM39-209ENST00000416529 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
RBM39-209ENST00000416529 CACNB1Q02641 598 aaPredicted RBP16.01■□□□□ 0.15
RBM39-209ENST00000416529 RNF39Q9H2S5 420 aa15.99■□□□□ 0.15
RBM39-209ENST00000416529 KCNA4P22459 653 aa15.86■□□□□ 0.13
RBM39-209ENST00000416529 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
RBM39-209ENST00000416529 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.8■□□□□ 0.123e-41■□□□□ 10.8
RBM39-209ENST00000416529 ABCC9O60706 1549 aa15.74■□□□□ 0.11
RBM39-209ENST00000416529 U3KPZ7 1027 aaPredicted RBP15.39■□□□□ 0.05
RBM39-209ENST00000416529 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
RBM39-209ENST00000416529 APLP2Q06481 763 aa15.26■□□□□ 0.03
RBM39-209ENST00000416529 MYO15BQ96JP2 1530 aa15.26■□□□□ 0.03
RBM39-209ENST00000416529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.23■□□□□ 0.03
RBM39-209ENST00000416529 HNRNPUL2Q1KMD3 747 aaKnown RBP15.23■□□□□ 0.03
RBM39-209ENST00000416529 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
RBM39-209ENST00000416529 ZCCHC6Q5VYS8 1495 aaKnown RBP15.19■□□□□ 0.02
RBM39-209ENST00000416529 CAPN15O75808 1086 aa15.16■□□□□ 0.02
RBM39-209ENST00000416529 NACADO15069 1562 aa15.15■□□□□ 0.02
RBM39-209ENST00000416529 SAMD1Q6SPF0 538 aaPredicted RBP15.1■□□□□ 0.01
RBM39-209ENST00000416529 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
RBM39-209ENST00000416529 SPINK5Q9NQ38 1064 aaPredicted RBP15.08■□□□□ 0
RBM39-209ENST00000416529 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
RBM39-209ENST00000416529 ZNF219Q9P2Y4 722 aaPredicted RBP15.02■□□□□ -0
RBM39-209ENST00000416529 MYCNP04198 464 aaPredicted RBP14.99□□□□□ -0.01
RBM39-209ENST00000416529 DSG3P32926 999 aa14.99□□□□□ -0.01
RBM39-209ENST00000416529 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
RBM39-209ENST00000416529 DCAF8L2P0C7V8 631 aa14.89□□□□□ -0.03
RBM39-209ENST00000416529 FOXD4L1Q9NU39 408 aa14.88□□□□□ -0.03
RBM39-209ENST00000416529 ABCB7O75027 752 aa14.73□□□□□ -0.05
RBM39-209ENST00000416529 SHROOM4Q9ULL8 1493 aa14.68□□□□□ -0.06
RBM39-209ENST00000416529 PABPN1Q86U42 306 aaKnown RBP eCLIP14.63□□□□□ -0.07
RBM39-209ENST00000416529 UNC13AQ9UPW8 1703 aa14.57□□□□□ -0.08
RBM39-209ENST00000416529 POLA2Q14181 598 aa14.56□□□□□ -0.08
RBM39-209ENST00000416529 ZBTB22O15209 634 aa14.52□□□□□ -0.09
RBM39-209ENST00000416529 SCRIBQ14160 1630 aa14.51□□□□□ -0.09
RBM39-209ENST00000416529 ATXN8OSP0DMR3 200 aa14.49□□□□□ -0.09
RBM39-209ENST00000416529 BICRAQ9NZM4 1560 aa14.48□□□□□ -0.09
RBM39-209ENST00000416529 RBM42Q9BTD8 480 aaKnown RBP14.48□□□□□ -0.09
RBM39-209ENST00000416529 ZBTB12Q9Y330 459 aaPredicted RBP14.46□□□□□ -0.09
RBM39-209ENST00000416529 ATF5Q9Y2D1 282 aaPredicted RBP14.42□□□□□ -0.1
RBM39-209ENST00000416529 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
RBM39-209ENST00000416529 POTEHQ6S545 545 aa14.16□□□□□ -0.14
RBM39-209ENST00000416529 EIF4G1Q04637 1599 aaKnown RBP14.13□□□□□ -0.15
RBM39-209ENST00000416529 BAZ1AQ9NRL2 1556 aaPredicted RBP14.13□□□□□ -0.15
RBM39-209ENST00000416529 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
RBM39-209ENST00000416529 FBLN2P98095 1184 aa14.11□□□□□ -0.15
RBM39-209ENST00000416529 AKT1S1Q96B36 256 aa14.11□□□□□ -0.15
RBM39-209ENST00000416529 OSCARQ8IYS5 282 aa14.05□□□□□ -0.16
RBM39-209ENST00000416529 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
RBM39-209ENST00000416529 DNAJC5Q9H3Z4 198 aa14.03□□□□□ -0.16
RBM39-209ENST00000416529 SMARCA4P51532 1647 aa14.02□□□□□ -0.16
RBM39-209ENST00000416529 SMARCA2P51531 1590 aa14□□□□□ -0.17
RBM39-209ENST00000416529 PEG3Q9GZU2 1588 aa14□□□□□ -0.17
RBM39-209ENST00000416529 CHRDL2Q6WN34 429 aa13.98□□□□□ -0.17
RBM39-209ENST00000416529 NCAPD3P42695 1498 aa13.96□□□□□ -0.17
RBM39-209ENST00000416529 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
RBM39-209ENST00000416529 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
RBM39-209ENST00000416529 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
RBM39-209ENST00000416529 EHMT2Q96KQ7 1210 aa13.94□□□□□ -0.18
RBM39-209ENST00000416529 ATAD2BQ9ULI0 1458 aa13.92□□□□□ -0.18
RBM39-209ENST00000416529 HMGXB3Q12766 1538 aa13.91□□□□□ -0.18
RBM39-209ENST00000416529 MROH2BQ7Z745 1585 aa13.9□□□□□ -0.18
RBM39-209ENST00000416529 REM2Q8IYK8 340 aaPredicted RBP13.89□□□□□ -0.19
RBM39-209ENST00000416529 RSF1Q96T23 1441 aaPredicted RBP13.88□□□□□ -0.19
RBM39-209ENST00000416529 BAZ1BQ9UIG0 1483 aaKnown RBP13.8□□□□□ -0.2
RBM39-209ENST00000416529 MKRN4PQ13434 485 aaPredicted RBP13.8□□□□□ -0.2
RBM39-209ENST00000416529 ZNF692Q9BU19 519 aaPredicted RBP13.75□□□□□ -0.21
RBM39-209ENST00000416529 TOP2AP11388 1531 aaKnown RBP13.73□□□□□ -0.21
RBM39-209ENST00000416529 WIZO95785 1651 aa13.72□□□□□ -0.21
RBM39-209ENST00000416529 PITPNM1O00562 1244 aa13.72□□□□□ -0.21
RBM39-209ENST00000416529 SSUH2Q9Y2M2 353 aa13.7□□□□□ -0.22
RBM39-209ENST00000416529 SPDYE1Q8NFV5 336 aaPredicted RBP13.67□□□□□ -0.22
RBM39-209ENST00000416529 ERCC6Q03468 1493 aa13.66□□□□□ -0.22
RBM39-209ENST00000416529 PIP4P2Q8N4L2 257 aa13.63□□□□□ -0.23
RBM39-209ENST00000416529 FXR2P51116 673 aaKnown RBP eCLIP13.6□□□□□ -0.23
RBM39-209ENST00000416529 CUX2O14529 1486 aa13.6□□□□□ -0.23
RBM39-209ENST00000416529 CLEC11AQ9Y240 323 aa13.56□□□□□ -0.24
RBM39-209ENST00000416529 LAMC3Q9Y6N6 1575 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms