RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
SCAF4-204ENST00000467731 CCDC180Q9P1Z9 1646 aa14.18□□□□□ -0.14
SCAF4-204ENST00000467731 ABCC9O60706 1549 aa13.62□□□□□ -0.23
SCAF4-204ENST00000467731 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
SCAF4-204ENST00000467731 DCAF8L2P0C7V8 631 aa13.37□□□□□ -0.27
SCAF4-204ENST00000467731 DCAF1Q9Y4B6 1507 aa13.31□□□□□ -0.28
SCAF4-204ENST00000467731 NACADO15069 1562 aa13.25□□□□□ -0.29
SCAF4-204ENST00000467731 MYO15BQ96JP2 1530 aa13.25□□□□□ -0.29
SCAF4-204ENST00000467731 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
SCAF4-204ENST00000467731 SCRIBQ14160 1630 aa13□□□□□ -0.33
SCAF4-204ENST00000467731 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
SCAF4-204ENST00000467731 SHROOM4Q9ULL8 1493 aa12.95□□□□□ -0.34
SCAF4-204ENST00000467731 BICRAQ9NZM4 1560 aa12.82□□□□□ -0.36
SCAF4-204ENST00000467731 PABPN1Q86U42 306 aaKnown RBP eCLIP12.78□□□□□ -0.36
SCAF4-204ENST00000467731 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
SCAF4-204ENST00000467731 BAZ1AQ9NRL2 1556 aaPredicted RBP12.46□□□□□ -0.42
SCAF4-204ENST00000467731 EIF4G1Q04637 1599 aaKnown RBP12.45□□□□□ -0.42
SCAF4-204ENST00000467731 SMARCA4P51532 1647 aa12.45□□□□□ -0.42
SCAF4-204ENST00000467731 MROH2BQ7Z745 1585 aa12.43□□□□□ -0.42
SCAF4-204ENST00000467731 RSF1Q96T23 1441 aaPredicted RBP12.38□□□□□ -0.43
SCAF4-204ENST00000467731 CC2D2AQ9P2K1 1620 aa12.33□□□□□ -0.43
SCAF4-204ENST00000467731 WIZO95785 1651 aa12.33□□□□□ -0.44
SCAF4-204ENST00000467731 SUPT5HO00267 1087 aaKnown RBP12.32□□□□□ -0.44
SCAF4-204ENST00000467731 PEG3Q9GZU2 1588 aa12.3□□□□□ -0.44
SCAF4-204ENST00000467731 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
SCAF4-204ENST00000467731 SMARCA2P51531 1590 aa12.28□□□□□ -0.44
SCAF4-204ENST00000467731 DNAJC5BQ9UF47 199 aa12.24□□□□□ -0.45
SCAF4-204ENST00000467731 NCAPD3P42695 1498 aa12.22□□□□□ -0.45
SCAF4-204ENST00000467731 BAZ1BQ9UIG0 1483 aaKnown RBP12.21□□□□□ -0.45
SCAF4-204ENST00000467731 HMGXB3Q12766 1538 aa12.2□□□□□ -0.46
SCAF4-204ENST00000467731 TOP2AP11388 1531 aaKnown RBP12.18□□□□□ -0.46
SCAF4-204ENST00000467731 CCDC88BA6NC98 1476 aa12.05□□□□□ -0.48
SCAF4-204ENST00000467731 CADPSQ9ULU8 1353 aa11.89□□□□□ -0.51
SCAF4-204ENST00000467731 CFTRP13569 1480 aa11.89□□□□□ -0.51
SCAF4-204ENST00000467731 NESP48681 1621 aa11.88□□□□□ -0.51
SCAF4-204ENST00000467731 LAMC3Q9Y6N6 1575 aa11.87□□□□□ -0.51
SCAF4-204ENST00000467731 PRDM2Q13029 1718 aa11.85□□□□□ -0.51
SCAF4-204ENST00000467731 KIF21AQ7Z4S6 1674 aa11.77□□□□□ -0.53
SCAF4-204ENST00000467731 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.53
SCAF4-204ENST00000467731 PDS5BQ9NTI5 1447 aa11.76□□□□□ -0.53
SCAF4-204ENST00000467731 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
SCAF4-204ENST00000467731 CEP164Q9UPV0 1460 aa11.72□□□□□ -0.53
SCAF4-204ENST00000467731 ERCC6Q03468 1493 aa11.71□□□□□ -0.54
SCAF4-204ENST00000467731 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
SCAF4-204ENST00000467731 CHIC1Q5VXU3 224 aa11.65□□□□□ -0.54
SCAF4-204ENST00000467731 SYNJ1O43426 1573 aa11.65□□□□□ -0.54
SCAF4-204ENST00000467731 CUX1P39880 1505 aa11.64□□□□□ -0.55
SCAF4-204ENST00000467731 URB2Q14146 1524 aaKnown RBP11.63□□□□□ -0.55
SCAF4-204ENST00000467731 MRC2Q9UBG0 1479 aa11.63□□□□□ -0.55
SCAF4-204ENST00000467731 THOC2Q8NI27 1593 aaKnown RBP11.63□□□□□ -0.55
SCAF4-204ENST00000467731 DNMBPQ6XZF7 1577 aa11.62□□□□□ -0.55
SCAF4-204ENST00000467731 TOP2BQ02880 1626 aa11.62□□□□□ -0.55
SCAF4-204ENST00000467731 BIVM-ERCC5R4GMW8 1640 aa11.61□□□□□ -0.55
SCAF4-204ENST00000467731 TOPBP1Q92547 1522 aa11.61□□□□□ -0.55
SCAF4-204ENST00000467731 TRIM41Q8WV44 630 aa11.6□□□□□ -0.55
SCAF4-204ENST00000467731 WDR62O43379 1518 aa11.6□□□□□ -0.55
SCAF4-204ENST00000467731 FGD5Q6ZNL6 1462 aa11.55□□□□□ -0.56
SCAF4-204ENST00000467731 POLA1P09884 1462 aaPredicted RBP11.54□□□□□ -0.56
SCAF4-204ENST00000467731 CUX2O14529 1486 aa11.5□□□□□ -0.57
SCAF4-204ENST00000467731 RAD54L2Q9Y4B4 1467 aa11.5□□□□□ -0.57
SCAF4-204ENST00000467731 SOGA1O94964 1423 aa11.48□□□□□ -0.57
SCAF4-204ENST00000467731 TARBP1Q13395 1621 aaKnown RBP11.47□□□□□ -0.57
SCAF4-204ENST00000467731 WDR97A6NE52 1622 aa11.46□□□□□ -0.58
SCAF4-204ENST00000467731 IFT140Q96RY7 1462 aa11.45□□□□□ -0.58
SCAF4-204ENST00000467731 ABCA10Q8WWZ4 1543 aa11.44□□□□□ -0.58
SCAF4-204ENST00000467731 RUSC2Q8N2Y8 1516 aa11.42□□□□□ -0.58
SCAF4-204ENST00000467731 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
SCAF4-204ENST00000467731 TDRD9Q8NDG6 1382 aaKnown RBP11.4□□□□□ -0.58
SCAF4-204ENST00000467731 KIF27Q86VH2 1401 aa11.39□□□□□ -0.59
SCAF4-204ENST00000467731 ABCA5Q8WWZ7 1642 aa11.39□□□□□ -0.59
SCAF4-204ENST00000467731 FAM9AQ8IZU1 332 aaPredicted RBP11.38□□□□□ -0.59
SCAF4-204ENST00000467731 AQRO60306 1485 aaKnown RBP eCLIP11.38□□□□□ -0.597e-7■■■□□ 18.8
SCAF4-204ENST00000467731 EIF4G3O43432 1585 aaKnown RBP11.38□□□□□ -0.59
SCAF4-204ENST00000467731 GAPVD1Q14C86 1478 aa11.36□□□□□ -0.59
SCAF4-204ENST00000467731 EEA1Q15075 1411 aa11.35□□□□□ -0.59
SCAF4-204ENST00000467731 PBRM1Q86U86 1689 aa11.35□□□□□ -0.59
SCAF4-204ENST00000467731 ERICH3Q5RHP9 1530 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 GRIN2BQ13224 1484 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 IGF1RP08069 1367 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
SCAF4-204ENST00000467731 CUL7Q14999 1698 aa11.27□□□□□ -0.6
SCAF4-204ENST00000467731 SNAPC4Q5SXM2 1469 aa11.27□□□□□ -0.61
SCAF4-204ENST00000467731 CARMIL1Q5VZK9 1371 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 ADAMTS12P58397 1594 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
SCAF4-204ENST00000467731 MAGI1Q96QZ7 1491 aaPredicted RBP11.25□□□□□ -0.61
SCAF4-204ENST00000467731 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
SCAF4-204ENST00000467731 KIF21BO75037 1637 aa11.24□□□□□ -0.61
SCAF4-204ENST00000467731 FHAD1B1AJZ9 1412 aa11.23□□□□□ -0.61
SCAF4-204ENST00000467731 RAPGEF2Q9Y4G8 1499 aa11.22□□□□□ -0.61
SCAF4-204ENST00000467731 SYNJ2O15056 1496 aa11.21□□□□□ -0.62
SCAF4-204ENST00000467731 LOC105371045A0A1W2PR82 267 aa11.2□□□□□ -0.62
SCAF4-204ENST00000467731 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 CHD1O14646 1710 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 FBLN2P98095 1184 aa11.19□□□□□ -0.62
SCAF4-204ENST00000467731 CHMP7Q8WUX9 453 aaPredicted RBP11.18□□□□□ -0.62
SCAF4-204ENST00000467731 GRIN2AQ12879 1464 aa11.18□□□□□ -0.62
SCAF4-204ENST00000467731 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
SCAF4-204ENST00000467731 CTTNBP2Q8WZ74 1663 aa11.13□□□□□ -0.63
SCAF4-204ENST00000467731 CEP170Q5SW79 1584 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms