Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RACGAP1-227ENST00000552310 932 ntTSL 316.51■□□□□ 0.233e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-204ENST00000546595 634 ntTSL 516.38■□□□□ 0.213e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-211ENST00000548247 564 ntTSL 414.62□□□□□ -0.073e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-215ENST00000548824 586 ntTSL 412.48□□□□□ -0.413e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-205ENST00000546723 574 ntTSL 211.05□□□□□ -0.643e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-201ENST00000312377 3073 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.763e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-209ENST00000547905 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.773e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-218ENST00000549777 570 ntTSL 48.15□□□□□ -1.13e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.33e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-223ENST00000551260 555 ntTSL 46.59□□□□□ -1.353e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-226ENST00000552157 386 ntTSL 35.89□□□□□ -1.473e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.713e-6■■■■■ 37.8
SF3B1O75533 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.95■■□□□ 1.421e-6■■■■■ 37.8
SF3B1O75533 ZNF767P-204ENST00000486492 1616 ntTSL 217.36■□□□□ 0.371e-6■■■■■ 37.8
SF3B1O75533 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.46■□□□□ 0.221e-6■■■■■ 37.8
SF3B1O75533 ZNF767P-203ENST00000481762 357 ntTSL 39.03□□□□□ -0.961e-6■■■■■ 37.8
SF3B1O75533 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.58■□□□□ 0.577e-10■■■■■ 37.8
SF3B1O75533 RBCK1-209ENST00000415942 2613 ntTSL 517.94■□□□□ 0.467e-10■■■■■ 37.8
SF3B1O75533 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.85■□□□□ 0.457e-10■■■■■ 37.8
SF3B1O75533 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.417e-10■■■■■ 37.8
SF3B1O75533 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.34■□□□□ 0.217e-10■■■■■ 37.8
SF3B1O75533 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)15.84■□□□□ 0.137e-10■■■■■ 37.8
SF3B1O75533 PRC1-206ENST00000555455 830 ntTSL 313.32□□□□□ -0.282e-6■■■■■ 37.8
SF3B1O75533 PRC1-217ENST00000560423 755 ntTSL 37.01□□□□□ -1.292e-6■■■■■ 37.8
SF3B1O75533 PRC1-210ENST00000556972 728 ntTSL 56.52□□□□□ -1.372e-6■■■■■ 37.8
SF3B1O75533 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.674e-6■■■■■ 37.8
SF3B1O75533 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC10.61□□□□□ -0.714e-6■■■■■ 37.8
SF3B1O75533 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC9.31□□□□□ -0.924e-6■■■■■ 37.8
SF3B1O75533 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC8.8□□□□□ -14e-6■■■■■ 37.8
SF3B1O75533 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.14e-6■■■■■ 37.8
SF3B1O75533 EIF1AX-202ENST00000379607 4427 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.821e-7■■■■■ 37.8
SF3B1O75533 RBM3-203ENST00000376759 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.391e-6■■■■■ 37.7
SF3B1O75533 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.36■□□□□ 0.852e-6■■■■■ 37.7
SF3B1O75533 TMC6-224ENST00000593044 3070 ntTSL 216.47■□□□□ 0.232e-6■■■■■ 37.7
SF3B1O75533 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.12e-6■■■■■ 37.7
SF3B1O75533 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.195e-6■■■■■ 37.7
SF3B1O75533 CHD7-206ENST00000527900 398 ntTSL 39.36□□□□□ -0.913e-6■■■■■ 37.7
SF3B1O75533 CHD7-202ENST00000524602 3456 ntTSL 1 (best) BASIC8.57□□□□□ -1.043e-6■■■■■ 37.7
SF3B1O75533 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC8.45□□□□□ -1.063e-6■■■■■ 37.7
SF3B1O75533 CHD7-205ENST00000527825 434 ntTSL 34.44□□□□□ -1.73e-6■■■■■ 37.7
SF3B1O75533 FAM178B-205ENST00000494172 592 ntTSL 319.61■□□□□ 0.739e-7■■■■■ 37.7
SF3B1O75533 TMC6-209ENST00000588087 2384 ntTSL 222.03■■□□□ 1.122e-6■■■■■ 37.7
SF3B1O75533 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.5■■□□□ 1.032e-6■■■■■ 37.7
SF3B1O75533 RNH1-217ENST00000529768 1019 ntTSL 224.19■■□□□ 1.463e-6■■■■■ 37.6
SF3B1O75533 TNPO2-216ENST00000589956 594 ntTSL 519.57■□□□□ 0.721e-6■■■■■ 37.6
SF3B1O75533 TNPO2-209ENST00000588151 546 ntTSL 316.92■□□□□ 0.31e-6■■■■■ 37.6
SF3B1O75533 TNPO2-205ENST00000586775 945 ntTSL 316.76■□□□□ 0.271e-6■■■■■ 37.6
SF3B1O75533 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)16.48■□□□□ 0.231e-6■■■■■ 37.6
SF3B1O75533 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.223e-6■■■■■ 37.6
SF3B1O75533 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.221e-6■■■■■ 37.6
SF3B1O75533 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.441e-6■■■■■ 37.6
SF3B1O75533 ZC3HAV1-202ENST00000460845 1487 ntTSL 1 (best)9.91□□□□□ -0.822e-7■■■■■ 37.6
SF3B1O75533 TANGO2-226ENST00000490583 888 ntTSL 318.66■□□□□ 0.584e-8■■■■■ 37.6
SF3B1O75533 HNRNPDL-209ENST00000630114 1433 ntTSL 522.47■■□□□ 1.193e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-203ENST00000502762 2356 ntTSL 1 (best)21.14■□□□□ 0.973e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.633e-25■■■■■ 37.6
SF3B1O75533 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.613e-13■■■■■ 37.6
SF3B1O75533 HNRNPDL-202ENST00000349655 1402 ntTSL 1 (best)18.52■□□□□ 0.563e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.523e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-205ENST00000514511 1143 ntTSL 217.64■□□□□ 0.413e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.13e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.86□□□□□ -0.193e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-201ENST00000295470 3781 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.613e-25■■■■■ 37.6
SF3B1O75533 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.943e-25■■■■■ 37.6
SF3B1O75533 ARL5A-203ENST00000446896 1268 ntTSL 25.93□□□□□ -1.463e-13■■■■■ 37.6
SF3B1O75533 PUM1-215ENST00000525948 1103 ntTSL 311.37□□□□□ -0.591e-6■■■■■ 37.6
SF3B1O75533 PUM1-209ENST00000480602 906 ntTSL 58.28□□□□□ -1.081e-6■■■■■ 37.6
SF3B1O75533 PUM1-218ENST00000526215 586 ntTSL 27.18□□□□□ -1.261e-6■■■■■ 37.6
SF3B1O75533 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.71■□□□□ 0.751e-6■■■■■ 37.6
SF3B1O75533 KDM2A-210ENST00000529006 6967 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.411e-6■■■■■ 37.6
SF3B1O75533 KDM2A-201ENST00000308783 3666 ntTSL 1 (best) BASIC10.43□□□□□ -0.741e-6■■■■■ 37.6
SF3B1O75533 CHD2-229ENST00000637789 904 ntTSL 510.96□□□□□ -0.656e-7■■■■■ 37.6
SF3B1O75533 UBE2L3-203ENST00000496722 3451 ntTSL 214.5□□□□□ -0.092e-6■■■■■ 37.6
SF3B1O75533 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC13.33□□□□□ -0.282e-6■■■■■ 37.6
SF3B1O75533 UBE2L3-201ENST00000342192 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.382e-6■■■■■ 37.6
SF3B1O75533 UBE2L3-202ENST00000458578 3007 ntTSL 2 BASIC11.93□□□□□ -0.52e-6■■■■■ 37.6
SF3B1O75533 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.14■■□□□ 1.33e-6■■■■■ 37.5
SF3B1O75533 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.25■□□□□ 0.833e-6■■■■■ 37.5
SF3B1O75533 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.55□□□□□ -0.083e-6■■■■■ 37.5
SF3B1O75533 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.143e-6■■■■■ 37.5
SF3B1O75533 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC13.51□□□□□ -0.253e-6■■■■■ 37.5
SF3B1O75533 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC11.02□□□□□ -0.653e-6■■■■■ 37.5
SF3B1O75533 CPSF1-202ENST00000527827 619 ntTSL 226.1■■□□□ 1.777e-8■■■■■ 37.5
SF3B1O75533 CSTF3-204ENST00000524556 558 ntTSL 316.34■□□□□ 0.217e-8■■■■■ 37.5
SF3B1O75533 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.55■□□□□ 0.087e-8■■■■■ 37.5
SF3B1O75533 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.37■□□□□ 0.057e-8■■■■■ 37.5
SF3B1O75533 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC12.43□□□□□ -0.427e-8■■■■■ 37.5
SF3B1O75533 CSTF3-205ENST00000524775 434 ntTSL 412.29□□□□□ -0.447e-8■■■■■ 37.5
SF3B1O75533 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.237e-8■■■■■ 37.5
SF3B1O75533 CSTF3-207ENST00000526480 479 ntTSL 36.63□□□□□ -1.357e-8■■■■■ 37.5
SF3B1O75533 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.223e-6■■■■■ 37.5
SF3B1O75533 CDK5RAP2-211ENST00000479584 611 ntTSL 313.54□□□□□ -0.247e-7■■■■■ 37.5
SF3B1O75533 EIF4A2-206ENST00000441007 480 ntTSL 314.97□□□□□ -0.018e-7■■■■■ 37.5
SF3B1O75533 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.515e-8■■■■■ 37.4
SF3B1O75533 PSMA4-212ENST00000559365 786 ntTSL 529.7■■■□□ 2.345e-8■■■■■ 37.4
SF3B1O75533 GGA2-206ENST00000566547 603 ntTSL 224.58■■□□□ 1.525e-8■■■■■ 37.4
SF3B1O75533 PHB2-208ENST00000543465 1518 ntTSL 524.25■■□□□ 1.475e-8■■■■■ 37.4
SF3B1O75533 AP2A1-208ENST00000601356 2238 nt23.91■■□□□ 1.425e-8■■■■■ 37.4
SF3B1O75533 ARRDC1-205ENST00000466367 866 ntTSL 1 (best)23.37■■□□□ 1.335e-8■■■■■ 37.4
SF3B1O75533 ARRDC1-202ENST00000419386 829 ntTSL 323.25■■□□□ 1.315e-8■■■■■ 37.4
Retrieved 100 of 46,956 protein–RNA pairs in 2913.2 ms