RNA–Protein interactions for RNA: ENST00000496722.1

UBE2L3-203, Transcript of ubiquitin conjugating enzyme E2 L3, humanhuman

TSL 2

Gene UBE2L3, Length 3,451 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2L3-203ENST00000496722 NISCHQ9Y2I1 1504 aa28.43■■■□□ 2.14
UBE2L3-203ENST00000496722 SHROOM4Q9ULL8 1493 aa25.1■■□□□ 1.61
UBE2L3-203ENST00000496722 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
UBE2L3-203ENST00000496722 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
UBE2L3-203ENST00000496722 ZCCHC6Q5VYS8 1495 aaKnown RBP24.03■■□□□ 1.44
UBE2L3-203ENST00000496722 MYO15BQ96JP2 1530 aa23.92■■□□□ 1.42
UBE2L3-203ENST00000496722 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
UBE2L3-203ENST00000496722 CCDC180Q9P1Z9 1646 aa23.72■■□□□ 1.39
UBE2L3-203ENST00000496722 PCGF6Q9BYE7 350 aa23.63■■□□□ 1.37
UBE2L3-203ENST00000496722 HRCP23327 699 aa23.54■■□□□ 1.36
UBE2L3-203ENST00000496722 LOC105371045A0A1W2PR82 267 aa23.47■■□□□ 1.35
UBE2L3-203ENST00000496722 PPARGC1BQ86YN6 1023 aaKnown RBP23.43■■□□□ 1.34
UBE2L3-203ENST00000496722 EHMT2Q96KQ7 1210 aa23.01■■□□□ 1.27
UBE2L3-203ENST00000496722 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
UBE2L3-203ENST00000496722 FAM9AQ8IZU1 332 aaPredicted RBP22.94■■□□□ 1.26
UBE2L3-203ENST00000496722 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
UBE2L3-203ENST00000496722 TRIM26Q12899 539 aaPredicted RBP22.8■■□□□ 1.24
UBE2L3-203ENST00000496722 TRIM41Q8WV44 630 aa22.76■■□□□ 1.23
UBE2L3-203ENST00000496722 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
UBE2L3-203ENST00000496722 ABCC9O60706 1549 aa22.71■■□□□ 1.23
UBE2L3-203ENST00000496722 RB1CC1Q8TDY2 1594 aa22.59■■□□□ 1.21
UBE2L3-203ENST00000496722 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
UBE2L3-203ENST00000496722 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
UBE2L3-203ENST00000496722 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
UBE2L3-203ENST00000496722 ZEB1P37275 1124 aaPredicted RBP22.2■■□□□ 1.14
UBE2L3-203ENST00000496722 WIZO95785 1651 aa22.19■■□□□ 1.14
UBE2L3-203ENST00000496722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
UBE2L3-203ENST00000496722 SCAF1Q9H7N4 1312 aaKnown RBP22.02■■□□□ 1.12
UBE2L3-203ENST00000496722 NACADO15069 1562 aa21.99■■□□□ 1.11
UBE2L3-203ENST00000496722 CCER1Q8TC90 406 aaPredicted RBP21.99■■□□□ 1.11
UBE2L3-203ENST00000496722 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
UBE2L3-203ENST00000496722 CCDC88BA6NC98 1476 aa21.85■■□□□ 1.09
UBE2L3-203ENST00000496722 BAZ1AQ9NRL2 1556 aaPredicted RBP21.81■■□□□ 1.08
UBE2L3-203ENST00000496722 SOGA1O94964 1423 aa21.78■■□□□ 1.08
UBE2L3-203ENST00000496722 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
UBE2L3-203ENST00000496722 UBTFP17480 764 aaKnown RBP21.73■■□□□ 1.07
UBE2L3-203ENST00000496722 PABPN1Q86U42 306 aaKnown RBP eCLIP21.72■■□□□ 1.07
UBE2L3-203ENST00000496722 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
UBE2L3-203ENST00000496722 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
UBE2L3-203ENST00000496722 CEP162Q5TB80 1403 aa21.67■■□□□ 1.06
UBE2L3-203ENST00000496722 DIEXFQ68CQ4 756 aaKnown RBP21.64■■□□□ 1.06
UBE2L3-203ENST00000496722 RANGAP1P46060 587 aaPredicted RBP21.61■■□□□ 1.05
UBE2L3-203ENST00000496722 TOP2AP11388 1531 aaKnown RBP21.61■■□□□ 1.05
UBE2L3-203ENST00000496722 CSRNP3Q8WYN3 585 aa21.59■■□□□ 1.05
UBE2L3-203ENST00000496722 SMARCA2P51531 1590 aa21.59■■□□□ 1.05
UBE2L3-203ENST00000496722 SMARCA4P51532 1647 aa21.58■■□□□ 1.04
UBE2L3-203ENST00000496722 ACIN1Q9UKV3 1341 aaKnown RBP21.57■■□□□ 1.04
UBE2L3-203ENST00000496722 HNRNPUL2Q1KMD3 747 aaKnown RBP21.52■■□□□ 1.04
UBE2L3-203ENST00000496722 GTF3C3Q9Y5Q9 886 aa21.49■■□□□ 1.03
UBE2L3-203ENST00000496722 TNIKQ9UKE5 1360 aa21.48■■□□□ 1.03
UBE2L3-203ENST00000496722 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
UBE2L3-203ENST00000496722 YTHDC1Q96MU7 727 aaKnown RBP21.45■■□□□ 1.02
UBE2L3-203ENST00000496722 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
UBE2L3-203ENST00000496722 PELP1Q8IZL8 1130 aaKnown RBP21.34■■□□□ 1.01
UBE2L3-203ENST00000496722 ZNF316A6NFI3 1004 aaPredicted RBP21.32■■□□□ 1
UBE2L3-203ENST00000496722 GOLGA3Q08378 1498 aa21.31■■□□□ 1
UBE2L3-203ENST00000496722 CENPBP07199 599 aaPredicted RBP21.3■■□□□ 1
UBE2L3-203ENST00000496722 MIER1Q8N108 512 aa21.24■□□□□ 0.99
UBE2L3-203ENST00000496722 SYNJ1O43426 1573 aa21.24■□□□□ 0.99
UBE2L3-203ENST00000496722 EEA1Q15075 1411 aa21.24■□□□□ 0.99
UBE2L3-203ENST00000496722 CLIP1P30622 1438 aa21.2■□□□□ 0.98
UBE2L3-203ENST00000496722 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
UBE2L3-203ENST00000496722 APLP2Q06481 763 aa21.16■□□□□ 0.98
UBE2L3-203ENST00000496722 RAPGEF2Q9Y4G8 1499 aa21.16■□□□□ 0.98
UBE2L3-203ENST00000496722 CEP164Q9UPV0 1460 aa21.13■□□□□ 0.97
UBE2L3-203ENST00000496722 VPS8Q8N3P4 1428 aa21.05■□□□□ 0.96
UBE2L3-203ENST00000496722 ATAD2BQ9ULI0 1458 aa21.04■□□□□ 0.96
UBE2L3-203ENST00000496722 BAZ1BQ9UIG0 1483 aaKnown RBP21.02■□□□□ 0.96
UBE2L3-203ENST00000496722 KANK4Q5T7N3 995 aaPredicted RBP21■□□□□ 0.95
UBE2L3-203ENST00000496722 KIF21BO75037 1637 aa20.99■□□□□ 0.95
UBE2L3-203ENST00000496722 ITGAEP38570 1179 aa20.96■□□□□ 0.95
UBE2L3-203ENST00000496722 PEG3Q9GZU2 1588 aa20.93■□□□□ 0.94
UBE2L3-203ENST00000496722 DHX57Q6P158 1386 aaKnown RBP20.81■□□□□ 0.92
UBE2L3-203ENST00000496722 ARAP1Q96P48 1450 aa20.79■□□□□ 0.92
UBE2L3-203ENST00000496722 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
UBE2L3-203ENST00000496722 PRXQ9BXM0 1461 aa20.71■□□□□ 0.91
UBE2L3-203ENST00000496722 KCNH8Q96L42 1107 aa20.68■□□□□ 0.9
UBE2L3-203ENST00000496722 CUX1P39880 1505 aa20.68■□□□□ 0.9
UBE2L3-203ENST00000496722 P3H3Q8IVL6 736 aa20.64■□□□□ 0.89
UBE2L3-203ENST00000496722 ATP1B4Q9UN42 357 aaPredicted RBP20.62■□□□□ 0.89
UBE2L3-203ENST00000496722 BIVM-ERCC5R4GMW8 1640 aa20.62■□□□□ 0.89
UBE2L3-203ENST00000496722 KIF27Q86VH2 1401 aa20.6■□□□□ 0.89
UBE2L3-203ENST00000496722 ERICH3Q5RHP9 1530 aa20.58■□□□□ 0.88
UBE2L3-203ENST00000496722 ARHGAP35Q9NRY4 1499 aa20.58■□□□□ 0.88
UBE2L3-203ENST00000496722 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.88
UBE2L3-203ENST00000496722 HIRIP3Q9BW71 556 aaPredicted RBP20.55■□□□□ 0.88
UBE2L3-203ENST00000496722 SUPT16HQ9Y5B9 1047 aaKnown RBP20.54■□□□□ 0.88
UBE2L3-203ENST00000496722 SIN3AQ96ST3 1273 aa20.54■□□□□ 0.88
UBE2L3-203ENST00000496722 RRBP1Q9P2E9 1410 aaKnown RBP20.53■□□□□ 0.88
UBE2L3-203ENST00000496722 FAM50AQ14320 339 aaKnown RBP20.53■□□□□ 0.88
UBE2L3-203ENST00000496722 CLSPNQ9HAW4 1339 aa20.52■□□□□ 0.88
UBE2L3-203ENST00000496722 RAB3GAP2Q9H2M9 1393 aa20.51■□□□□ 0.87
UBE2L3-203ENST00000496722 CUX2O14529 1486 aa20.48■□□□□ 0.87
UBE2L3-203ENST00000496722 NCAPD3P42695 1498 aa20.46■□□□□ 0.87
UBE2L3-203ENST00000496722 DDX10Q13206 875 aaKnown RBP20.45■□□□□ 0.86
UBE2L3-203ENST00000496722 BCANQ96GW7 911 aa20.45■□□□□ 0.86
UBE2L3-203ENST00000496722 IGF1RP08069 1367 aa20.45■□□□□ 0.86
UBE2L3-203ENST00000496722 CFTRP13569 1480 aa20.43■□□□□ 0.86
UBE2L3-203ENST00000496722 PHLDB1Q86UU1 1377 aa20.41■□□□□ 0.86
UBE2L3-203ENST00000496722 MAPKBP1O60336 1514 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms