RNA–Protein interactions for RNA: ENST00000458578.6

UBE2L3-202, Transcript of ubiquitin conjugating enzyme E2 L3, humanhuman

TSL 2 BASIC

Gene UBE2L3, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2L3-202ENST00000458578 NISCHQ9Y2I1 1504 aa22.73■■□□□ 1.23
UBE2L3-202ENST00000458578 SHROOM4Q9ULL8 1493 aa20.03■□□□□ 0.8
UBE2L3-202ENST00000458578 SUPT5HO00267 1087 aaKnown RBP19.82■□□□□ 0.76
UBE2L3-202ENST00000458578 DCAF8L2P0C7V8 631 aa19.49■□□□□ 0.71
UBE2L3-202ENST00000458578 HRCP23327 699 aa19.38■□□□□ 0.69
UBE2L3-202ENST00000458578 PCGF6Q9BYE7 350 aa19.31■□□□□ 0.68
UBE2L3-202ENST00000458578 MYO15BQ96JP2 1530 aa19.22■□□□□ 0.67
UBE2L3-202ENST00000458578 PPARGC1BQ86YN6 1023 aaKnown RBP19.21■□□□□ 0.67
UBE2L3-202ENST00000458578 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
UBE2L3-202ENST00000458578 ZCCHC6Q5VYS8 1495 aaKnown RBP19.19■□□□□ 0.66
UBE2L3-202ENST00000458578 CCDC180Q9P1Z9 1646 aa19■□□□□ 0.63
UBE2L3-202ENST00000458578 LOC105371045A0A1W2PR82 267 aa18.89■□□□□ 0.61
UBE2L3-202ENST00000458578 DCAF1Q9Y4B6 1507 aa18.57■□□□□ 0.56
UBE2L3-202ENST00000458578 TRIM26Q12899 539 aaPredicted RBP18.57■□□□□ 0.56
UBE2L3-202ENST00000458578 EHMT2Q96KQ7 1210 aa18.47■□□□□ 0.55
UBE2L3-202ENST00000458578 FAM9AQ8IZU1 332 aaPredicted RBP18.4■□□□□ 0.54
UBE2L3-202ENST00000458578 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
UBE2L3-202ENST00000458578 ZEB1P37275 1124 aaPredicted RBP18.25■□□□□ 0.51
UBE2L3-202ENST00000458578 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
UBE2L3-202ENST00000458578 SCRIBQ14160 1630 aa18.24■□□□□ 0.51
UBE2L3-202ENST00000458578 PELP1Q8IZL8 1130 aaKnown RBP18.16■□□□□ 0.5
UBE2L3-202ENST00000458578 RSF1Q96T23 1441 aaPredicted RBP18.14■□□□□ 0.49
UBE2L3-202ENST00000458578 ABCC9O60706 1549 aa18.12■□□□□ 0.49
UBE2L3-202ENST00000458578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
UBE2L3-202ENST00000458578 RB1CC1Q8TDY2 1594 aa17.99■□□□□ 0.47
UBE2L3-202ENST00000458578 TTBK1Q5TCY1 1321 aaPredicted RBP17.95■□□□□ 0.46
UBE2L3-202ENST00000458578 CCER1Q8TC90 406 aaPredicted RBP17.93■□□□□ 0.46
UBE2L3-202ENST00000458578 CECR2Q9BXF3 1484 aa17.91■□□□□ 0.46
UBE2L3-202ENST00000458578 NEUROD1Q13562 356 aa17.89■□□□□ 0.45
UBE2L3-202ENST00000458578 ACIN1Q9UKV3 1341 aaKnown RBP17.85■□□□□ 0.45
UBE2L3-202ENST00000458578 GTF3C3Q9Y5Q9 886 aa17.8■□□□□ 0.44
UBE2L3-202ENST00000458578 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
UBE2L3-202ENST00000458578 DIEXFQ68CQ4 756 aaKnown RBP17.76■□□□□ 0.43
UBE2L3-202ENST00000458578 WIZO95785 1651 aa17.7■□□□□ 0.42
UBE2L3-202ENST00000458578 CENPBP07199 599 aaPredicted RBP17.69■□□□□ 0.42
UBE2L3-202ENST00000458578 NACADO15069 1562 aa17.65■□□□□ 0.42
UBE2L3-202ENST00000458578 YTHDC1Q96MU7 727 aaKnown RBP17.64■□□□□ 0.41
UBE2L3-202ENST00000458578 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
UBE2L3-202ENST00000458578 PABPN1Q86U42 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
UBE2L3-202ENST00000458578 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
UBE2L3-202ENST00000458578 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
UBE2L3-202ENST00000458578 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
UBE2L3-202ENST00000458578 ZNF316A6NFI3 1004 aaPredicted RBP17.41■□□□□ 0.38
UBE2L3-202ENST00000458578 HNRNPUL2Q1KMD3 747 aaKnown RBP17.37■□□□□ 0.37
UBE2L3-202ENST00000458578 SOGA1O94964 1423 aa17.36■□□□□ 0.37
UBE2L3-202ENST00000458578 MIER1Q8N108 512 aa17.34■□□□□ 0.37
UBE2L3-202ENST00000458578 CEP162Q5TB80 1403 aa17.34■□□□□ 0.37
UBE2L3-202ENST00000458578 MYT1Q01538 1121 aa17.3■□□□□ 0.36
UBE2L3-202ENST00000458578 RANGAP1P46060 587 aaPredicted RBP17.29■□□□□ 0.36
UBE2L3-202ENST00000458578 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
UBE2L3-202ENST00000458578 CSRNP3Q8WYN3 585 aa17.28■□□□□ 0.36
UBE2L3-202ENST00000458578 EIF4G1Q04637 1599 aaKnown RBP17.28■□□□□ 0.36
UBE2L3-202ENST00000458578 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.36
UBE2L3-202ENST00000458578 SMARCA4P51532 1647 aa17.25■□□□□ 0.35
UBE2L3-202ENST00000458578 SMARCA2P51531 1590 aa17.23■□□□□ 0.35
UBE2L3-202ENST00000458578 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.35
UBE2L3-202ENST00000458578 TNIKQ9UKE5 1360 aa17.16■□□□□ 0.34
UBE2L3-202ENST00000458578 UNC13AQ9UPW8 1703 aa17.13■□□□□ 0.33
UBE2L3-202ENST00000458578 APLP2Q06481 763 aa17.07■□□□□ 0.32
UBE2L3-202ENST00000458578 GOLGA3Q08378 1498 aa17.03■□□□□ 0.32
UBE2L3-202ENST00000458578 EEA1Q15075 1411 aa17■□□□□ 0.31
UBE2L3-202ENST00000458578 CLIP1P30622 1438 aa16.94■□□□□ 0.3
UBE2L3-202ENST00000458578 BICRAQ9NZM4 1560 aa16.94■□□□□ 0.3
UBE2L3-202ENST00000458578 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
UBE2L3-202ENST00000458578 SUPT16HQ9Y5B9 1047 aaKnown RBP16.92■□□□□ 0.3
UBE2L3-202ENST00000458578 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.3
UBE2L3-202ENST00000458578 RAPGEF2Q9Y4G8 1499 aa16.87■□□□□ 0.29
UBE2L3-202ENST00000458578 BAZ1BQ9UIG0 1483 aaKnown RBP16.86■□□□□ 0.29
UBE2L3-202ENST00000458578 ATAD2BQ9ULI0 1458 aa16.85■□□□□ 0.29
UBE2L3-202ENST00000458578 ITGAEP38570 1179 aa16.84■□□□□ 0.29
UBE2L3-202ENST00000458578 BCANQ96GW7 911 aa16.83■□□□□ 0.28
UBE2L3-202ENST00000458578 VPS8Q8N3P4 1428 aa16.82■□□□□ 0.28
UBE2L3-202ENST00000458578 KCNH8Q96L42 1107 aa16.78■□□□□ 0.28
UBE2L3-202ENST00000458578 TSHZ2Q9NRE2 1034 aa16.77■□□□□ 0.28
UBE2L3-202ENST00000458578 DHX57Q6P158 1386 aaKnown RBP16.76■□□□□ 0.27
UBE2L3-202ENST00000458578 KIF21BO75037 1637 aa16.74■□□□□ 0.27
UBE2L3-202ENST00000458578 PEG3Q9GZU2 1588 aa16.74■□□□□ 0.27
UBE2L3-202ENST00000458578 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
UBE2L3-202ENST00000458578 CLSPNQ9HAW4 1339 aa16.66■□□□□ 0.26
UBE2L3-202ENST00000458578 ANP32EQ9BTT0 268 aa16.65■□□□□ 0.26
UBE2L3-202ENST00000458578 FKBP8Q14318 412 aa16.64■□□□□ 0.25
UBE2L3-202ENST00000458578 DDX10Q13206 875 aaKnown RBP16.6■□□□□ 0.25
UBE2L3-202ENST00000458578 TOP2BQ02880 1626 aa16.6■□□□□ 0.25
UBE2L3-202ENST00000458578 HIRIP3Q9BW71 556 aaPredicted RBP16.59■□□□□ 0.25
UBE2L3-202ENST00000458578 ARAP1Q96P48 1450 aa16.56■□□□□ 0.24
UBE2L3-202ENST00000458578 ATP1B4Q9UN42 357 aaPredicted RBP16.56■□□□□ 0.24
UBE2L3-202ENST00000458578 TRIM52Q96A61 297 aa16.54■□□□□ 0.24
UBE2L3-202ENST00000458578 PRXQ9BXM0 1461 aa16.53■□□□□ 0.24
UBE2L3-202ENST00000458578 P3H3Q8IVL6 736 aa16.52■□□□□ 0.23
UBE2L3-202ENST00000458578 KIF27Q86VH2 1401 aa16.51■□□□□ 0.23
UBE2L3-202ENST00000458578 SIN3AQ96ST3 1273 aa16.51■□□□□ 0.23
UBE2L3-202ENST00000458578 CUX1P39880 1505 aa16.51■□□□□ 0.23
UBE2L3-202ENST00000458578 NEFLP07196 543 aa16.49■□□□□ 0.23
UBE2L3-202ENST00000458578 CCNB3Q8WWL7 1395 aa16.49■□□□□ 0.23
UBE2L3-202ENST00000458578 BCL11AQ9H165 835 aa16.48■□□□□ 0.23
UBE2L3-202ENST00000458578 BIVM-ERCC5R4GMW8 1640 aa16.46■□□□□ 0.22
UBE2L3-202ENST00000458578 FAM50AQ14320 339 aaKnown RBP16.45■□□□□ 0.22
UBE2L3-202ENST00000458578 RAB3GAP2Q9H2M9 1393 aa16.45■□□□□ 0.22
UBE2L3-202ENST00000458578 ERICH3Q5RHP9 1530 aa16.44■□□□□ 0.22
UBE2L3-202ENST00000458578 RBM19Q9Y4C8 960 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms