RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 NISCHQ9Y2I1 1504 aa37.37■■■■□ 3.57
CSTF3-204ENST00000524556 ABCC9O60706 1549 aa33.94■■■■□ 3.02
CSTF3-204ENST00000524556 CCDC180Q9P1Z9 1646 aa33.67■■■□□ 2.98
CSTF3-204ENST00000524556 RB1CC1Q8TDY2 1594 aa32.19■■■□□ 2.74
CSTF3-204ENST00000524556 DNAJC5BQ9UF47 199 aa32.15■■■□□ 2.74
CSTF3-204ENST00000524556 NACADO15069 1562 aa31.91■■■□□ 2.7
CSTF3-204ENST00000524556 DCAF8L2P0C7V8 631 aa31.67■■■□□ 2.66
CSTF3-204ENST00000524556 PABPN1Q86U42 306 aaKnown RBP eCLIP31.57■■■□□ 2.64
CSTF3-204ENST00000524556 UNC13AQ9UPW8 1703 aa31.5■■■□□ 2.63
CSTF3-204ENST00000524556 MYO15BQ96JP2 1530 aa31.37■■■□□ 2.61
CSTF3-204ENST00000524556 BICRAQ9NZM4 1560 aa31.27■■■□□ 2.6
CSTF3-204ENST00000524556 ZCCHC6Q5VYS8 1495 aaKnown RBP30.89■■■□□ 2.54
CSTF3-204ENST00000524556 DCAF1Q9Y4B6 1507 aa30.86■■■□□ 2.53
CSTF3-204ENST00000524556 SHROOM4Q9ULL8 1493 aa30.81■■■□□ 2.52
CSTF3-204ENST00000524556 CC2D2AQ9P2K1 1620 aa30.67■■■□□ 2.5
CSTF3-204ENST00000524556 SCRIBQ14160 1630 aa30.64■■■□□ 2.5
CSTF3-204ENST00000524556 CECR2Q9BXF3 1484 aa30.62■■■□□ 2.49
CSTF3-204ENST00000524556 EIF4G1Q04637 1599 aaKnown RBP30.52■■■□□ 2.48
CSTF3-204ENST00000524556 DNAJC5Q9H3Z4 198 aa29.74■■■□□ 2.35
CSTF3-204ENST00000524556 NCAPD3P42695 1498 aa29.46■■■□□ 2.31
CSTF3-204ENST00000524556 CUX2O14529 1486 aa29.39■■■□□ 2.3
CSTF3-204ENST00000524556 ATAD2BQ9ULI0 1458 aa29.33■■■□□ 2.29
CSTF3-204ENST00000524556 ERCC6Q03468 1493 aa29.32■■■□□ 2.28
CSTF3-204ENST00000524556 SMARCA2P51531 1590 aa29.22■■■□□ 2.27
CSTF3-204ENST00000524556 SMARCA4P51532 1647 aa29.21■■■□□ 2.27
CSTF3-204ENST00000524556 HMGXB3Q12766 1538 aa29.2■■■□□ 2.26
CSTF3-204ENST00000524556 NESP48681 1621 aa29.08■■■□□ 2.25
CSTF3-204ENST00000524556 BAZ1AQ9NRL2 1556 aaPredicted RBP29.02■■■□□ 2.24
CSTF3-204ENST00000524556 BAZ1BQ9UIG0 1483 aaKnown RBP29.01■■■□□ 2.23
CSTF3-204ENST00000524556 PEG3Q9GZU2 1588 aa28.94■■■□□ 2.22
CSTF3-204ENST00000524556 THOC2Q8NI27 1593 aaKnown RBP28.85■■■□□ 2.21
CSTF3-204ENST00000524556 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
CSTF3-204ENST00000524556 MROH2BQ7Z745 1585 aa28.79■■■□□ 2.2
CSTF3-204ENST00000524556 KIF21AQ7Z4S6 1674 aa28.71■■■□□ 2.19
CSTF3-204ENST00000524556 PDS5BQ9NTI5 1447 aa28.69■■■□□ 2.18
CSTF3-204ENST00000524556 CADPSQ9ULU8 1353 aa28.55■■■□□ 2.16
CSTF3-204ENST00000524556 MRC2Q9UBG0 1479 aa28.44■■■□□ 2.14
CSTF3-204ENST00000524556 WIZO95785 1651 aa28.44■■■□□ 2.14
CSTF3-204ENST00000524556 WDR62O43379 1518 aa28.38■■■□□ 2.13
CSTF3-204ENST00000524556 TRIM41Q8WV44 630 aa28.29■■■□□ 2.12
CSTF3-204ENST00000524556 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
CSTF3-204ENST00000524556 FANCD2Q9BXW9 1451 aa28.21■■■□□ 2.11
CSTF3-204ENST00000524556 CFTRP13569 1480 aa28.15■■■□□ 2.1
CSTF3-204ENST00000524556 RSF1Q96T23 1441 aaPredicted RBP28.09■■■□□ 2.09
CSTF3-204ENST00000524556 TOP2AP11388 1531 aaKnown RBP28.04■■■□□ 2.08
CSTF3-204ENST00000524556 OSCARQ8IYS5 282 aa28.02■■■□□ 2.08
CSTF3-204ENST00000524556 URB2Q14146 1524 aaKnown RBP28.01■■■□□ 2.07
CSTF3-204ENST00000524556 PRDM2Q13029 1718 aa27.87■■■□□ 2.05
CSTF3-204ENST00000524556 CCDC88BA6NC98 1476 aa27.75■■■□□ 2.03
CSTF3-204ENST00000524556 IFT140Q96RY7 1462 aa27.72■■■□□ 2.03
CSTF3-204ENST00000524556 ZNF608Q9ULD9 1512 aaPredicted RBP27.71■■■□□ 2.03
CSTF3-204ENST00000524556 RIMBP3CA6NJZ7 1639 aa27.67■■■□□ 2.02
CSTF3-204ENST00000524556 RIMBP3BA6NNM3 1639 aa27.67■■■□□ 2.02
CSTF3-204ENST00000524556 RIMBP3Q9UFD9 1639 aa27.67■■■□□ 2.02
CSTF3-204ENST00000524556 TOPBP1Q92547 1522 aa27.65■■■□□ 2.02
CSTF3-204ENST00000524556 ABCC8Q09428 1581 aa27.59■■■□□ 2.01
CSTF3-204ENST00000524556 ARHGEF11O15085 1522 aa27.54■■■□□ 2
CSTF3-204ENST00000524556 EIF4G3O43432 1585 aaKnown RBP27.53■■■□□ 2
CSTF3-204ENST00000524556 DNMBPQ6XZF7 1577 aa27.52■■■□□ 2
CSTF3-204ENST00000524556 TARBP1Q13395 1621 aaKnown RBP27.44■■□□□ 1.98
CSTF3-204ENST00000524556 AQRO60306 1485 aaKnown RBP eCLIP27.43■■□□□ 1.98
CSTF3-204ENST00000524556 CHD1O14646 1710 aa27.41■■□□□ 1.98
CSTF3-204ENST00000524556 CYB5RLQ6IPT4 315 aa27.38■■□□□ 1.97
CSTF3-204ENST00000524556 POLA1P09884 1462 aaPredicted RBP27.34■■□□□ 1.97
CSTF3-204ENST00000524556 FBLN2P98095 1184 aa27.3■■□□□ 1.96
CSTF3-204ENST00000524556 ARAP1Q96P48 1450 aa27.25■■□□□ 1.95
CSTF3-204ENST00000524556 RAD54L2Q9Y4B4 1467 aa27.25■■□□□ 1.95
CSTF3-204ENST00000524556 SOGA1O94964 1423 aa27.23■■□□□ 1.95
CSTF3-204ENST00000524556 TDRD9Q8NDG6 1382 aaKnown RBP27.2■■□□□ 1.94
CSTF3-204ENST00000524556 TRHP20396 242 aaPredicted RBP27.16■■□□□ 1.94
CSTF3-204ENST00000524556 WDR97A6NE52 1622 aa27.14■■□□□ 1.94
CSTF3-204ENST00000524556 FGD5Q6ZNL6 1462 aa27.13■■□□□ 1.93
CSTF3-204ENST00000524556 SNAPC4Q5SXM2 1469 aa27.12■■□□□ 1.93
CSTF3-204ENST00000524556 CLASP1Q7Z460 1538 aa27.07■■□□□ 1.92
CSTF3-204ENST00000524556 CUX1P39880 1505 aa27.06■■□□□ 1.92
CSTF3-204ENST00000524556 CHMP7Q8WUX9 453 aaPredicted RBP27.06■■□□□ 1.92
CSTF3-204ENST00000524556 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
CSTF3-204ENST00000524556 SYNJ1O43426 1573 aa27.03■■□□□ 1.92
CSTF3-204ENST00000524556 GRIN2BQ13224 1484 aa27.02■■□□□ 1.92
CSTF3-204ENST00000524556 SYNJ2O15056 1496 aa26.96■■□□□ 1.91
CSTF3-204ENST00000524556 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
CSTF3-204ENST00000524556 GAPVD1Q14C86 1478 aa26.88■■□□□ 1.89
CSTF3-204ENST00000524556 ABCA10Q8WWZ4 1543 aa26.81■■□□□ 1.88
CSTF3-204ENST00000524556 ABCA5Q8WWZ7 1642 aa26.8■■□□□ 1.88
CSTF3-204ENST00000524556 GRIN2AQ12879 1464 aa26.67■■□□□ 1.86
CSTF3-204ENST00000524556 WRNQ14191 1432 aaPredicted RBP eCLIP26.65■■□□□ 1.86
CSTF3-204ENST00000524556 ERCC6L2Q5T890 1561 aa26.63■■□□□ 1.85
CSTF3-204ENST00000524556 SUPT5HO00267 1087 aaKnown RBP26.61■■□□□ 1.85
CSTF3-204ENST00000524556 ADAMTS12P58397 1594 aa26.61■■□□□ 1.85
CSTF3-204ENST00000524556 NUP160Q12769 1436 aa26.59■■□□□ 1.85
CSTF3-204ENST00000524556 AEBP2Q6ZN18 517 aaPredicted RBP26.59■■□□□ 1.85
CSTF3-204ENST00000524556 CEP170Q5SW79 1584 aa26.58■■□□□ 1.85
CSTF3-204ENST00000524556 BIVM-ERCC5R4GMW8 1640 aa26.56■■□□□ 1.84
CSTF3-204ENST00000524556 TOP2BQ02880 1626 aa26.55■■□□□ 1.84
CSTF3-204ENST00000524556 FHAD1B1AJZ9 1412 aa26.53■■□□□ 1.84
CSTF3-204ENST00000524556 SHROOM2Q13796 1616 aa26.52■■□□□ 1.84
CSTF3-204ENST00000524556 ERICH3Q5RHP9 1530 aa26.47■■□□□ 1.83
CSTF3-204ENST00000524556 PRG4Q92954 1404 aaPredicted RBP26.37■■□□□ 1.81
CSTF3-204ENST00000524556 KIF13AQ9H1H9 1805 aa26.35■■□□□ 1.81
CSTF3-204ENST00000524556 JPH4Q96JJ6 628 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms