Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHB3Q9Y5E6 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
PCDHB3Q9Y5E6 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.51■■□□□ 1.83
PCDHB3Q9Y5E6 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHB3Q9Y5E6 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHB3Q9Y5E6 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHB3Q9Y5E6 RPS2P35-201ENST00000443417 897 ntBASIC26.49■■□□□ 1.83
PCDHB3Q9Y5E6 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHB3Q9Y5E6 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.48■■□□□ 1.83
PCDHB3Q9Y5E6 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHB3Q9Y5E6 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHB3Q9Y5E6 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHB3Q9Y5E6 AL133380.1-201ENST00000506013 324 ntBASIC26.46■■□□□ 1.83
PCDHB3Q9Y5E6 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
PCDHB3Q9Y5E6 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.45■■□□□ 1.83
PCDHB3Q9Y5E6 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHB3Q9Y5E6 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHB3Q9Y5E6 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHB3Q9Y5E6 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHB3Q9Y5E6 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHB3Q9Y5E6 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
PCDHB3Q9Y5E6 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC26.41■■□□□ 1.82
PCDHB3Q9Y5E6 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHB3Q9Y5E6 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHB3Q9Y5E6 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHB3Q9Y5E6 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHB3Q9Y5E6 CAHM-201ENST00000604200 896 ntBASIC26.39■■□□□ 1.82
PCDHB3Q9Y5E6 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.38■■□□□ 1.81
PCDHB3Q9Y5E6 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHB3Q9Y5E6 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.35■■□□□ 1.81
PCDHB3Q9Y5E6 AL391121.1-201ENST00000607967 1349 ntBASIC26.35■■□□□ 1.81
PCDHB3Q9Y5E6 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHB3Q9Y5E6 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHB3Q9Y5E6 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHB3Q9Y5E6 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
PCDHB3Q9Y5E6 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.33■■□□□ 1.8
PCDHB3Q9Y5E6 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.32■■□□□ 1.8
PCDHB3Q9Y5E6 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHB3Q9Y5E6 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHB3Q9Y5E6 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHB3Q9Y5E6 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHB3Q9Y5E6 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
PCDHB3Q9Y5E6 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHB3Q9Y5E6 AP006261.1-201ENST00000584783 668 ntBASIC26.27■■□□□ 1.8
PCDHB3Q9Y5E6 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
PCDHB3Q9Y5E6 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.26■■□□□ 1.79
PCDHB3Q9Y5E6 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.26■■□□□ 1.79
PCDHB3Q9Y5E6 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHB3Q9Y5E6 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
PCDHB3Q9Y5E6 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
PCDHB3Q9Y5E6 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHB3Q9Y5E6 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHB3Q9Y5E6 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHB3Q9Y5E6 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
PCDHB3Q9Y5E6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
PCDHB3Q9Y5E6 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDHB3Q9Y5E6 AL162393.1-201ENST00000437852 946 ntBASIC26.19■■□□□ 1.78
PCDHB3Q9Y5E6 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHB3Q9Y5E6 EBPL-202ENST00000378268 680 ntTSL 3 BASIC26.18■■□□□ 1.78
PCDHB3Q9Y5E6 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.18■■□□□ 1.78
PCDHB3Q9Y5E6 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.17■■□□□ 1.78
PCDHB3Q9Y5E6 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHB3Q9Y5E6 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHB3Q9Y5E6 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHB3Q9Y5E6 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHB3Q9Y5E6 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.13■■□□□ 1.77
PCDHB3Q9Y5E6 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHB3Q9Y5E6 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHB3Q9Y5E6 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHB3Q9Y5E6 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
PCDHB3Q9Y5E6 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.11■■□□□ 1.77
PCDHB3Q9Y5E6 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHB3Q9Y5E6 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHB3Q9Y5E6 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHB3Q9Y5E6 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHB3Q9Y5E6 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.09■■□□□ 1.77
PCDHB3Q9Y5E6 AC120057.4-201ENST00000624722 1615 ntBASIC26.09■■□□□ 1.77
PCDHB3Q9Y5E6 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.08■■□□□ 1.77
PCDHB3Q9Y5E6 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.08■■□□□ 1.77
PCDHB3Q9Y5E6 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.08■■□□□ 1.77
PCDHB3Q9Y5E6 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHB3Q9Y5E6 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHB3Q9Y5E6 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHB3Q9Y5E6 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 MIR3665-201ENST00000578708 105 ntBASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHB3Q9Y5E6 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHB3Q9Y5E6 ABCB10P1-201ENST00000614297 2181 ntBASIC26.05■■□□□ 1.76
PCDHB3Q9Y5E6 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHB3Q9Y5E6 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.05■■□□□ 1.76
PCDHB3Q9Y5E6 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHB3Q9Y5E6 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHB3Q9Y5E6 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHB3Q9Y5E6 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.03■■□□□ 1.76
PCDHB3Q9Y5E6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
PCDHB3Q9Y5E6 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.03■■□□□ 1.76
PCDHB3Q9Y5E6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms