Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.9■■□□□ 1.9
TRIM39Q9HCM9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
TRIM39Q9HCM9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.89■■□□□ 1.9
TRIM39Q9HCM9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.89■■□□□ 1.9
TRIM39Q9HCM9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.89■■□□□ 1.9
TRIM39Q9HCM9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
TRIM39Q9HCM9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
TRIM39Q9HCM9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
TRIM39Q9HCM9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
TRIM39Q9HCM9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
TRIM39Q9HCM9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
TRIM39Q9HCM9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
TRIM39Q9HCM9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.84■■□□□ 1.89
TRIM39Q9HCM9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
TRIM39Q9HCM9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
TRIM39Q9HCM9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
TRIM39Q9HCM9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
TRIM39Q9HCM9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TRIM39Q9HCM9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TRIM39Q9HCM9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
TRIM39Q9HCM9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
TRIM39Q9HCM9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
TRIM39Q9HCM9 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.76■■□□□ 1.87
TRIM39Q9HCM9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
TRIM39Q9HCM9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
TRIM39Q9HCM9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.76■■□□□ 1.87
TRIM39Q9HCM9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
TRIM39Q9HCM9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
TRIM39Q9HCM9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.74■■□□□ 1.87
TRIM39Q9HCM9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
TRIM39Q9HCM9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
TRIM39Q9HCM9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
TRIM39Q9HCM9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TRIM39Q9HCM9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.7■■□□□ 1.86
TRIM39Q9HCM9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TRIM39Q9HCM9 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.69■■□□□ 1.86
TRIM39Q9HCM9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRIM39Q9HCM9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
TRIM39Q9HCM9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM39Q9HCM9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TRIM39Q9HCM9 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.66■■□□□ 1.86
TRIM39Q9HCM9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRIM39Q9HCM9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRIM39Q9HCM9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TRIM39Q9HCM9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
TRIM39Q9HCM9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.64■■□□□ 1.86
TRIM39Q9HCM9 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.63■■□□□ 1.85
TRIM39Q9HCM9 MIR762-201ENST00000390236 83 ntBASIC26.62■■□□□ 1.85
TRIM39Q9HCM9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
TRIM39Q9HCM9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
TRIM39Q9HCM9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
TRIM39Q9HCM9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
TRIM39Q9HCM9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM39Q9HCM9 AP006261.1-201ENST00000584783 668 ntBASIC26.59■■□□□ 1.85
TRIM39Q9HCM9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRIM39Q9HCM9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRIM39Q9HCM9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
TRIM39Q9HCM9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.56■■□□□ 1.84
TRIM39Q9HCM9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM39Q9HCM9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM39Q9HCM9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM39Q9HCM9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM39Q9HCM9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM39Q9HCM9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM39Q9HCM9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.53■■□□□ 1.84
TRIM39Q9HCM9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM39Q9HCM9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM39Q9HCM9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
TRIM39Q9HCM9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.53■■□□□ 1.84
TRIM39Q9HCM9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
TRIM39Q9HCM9 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
TRIM39Q9HCM9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.52■■□□□ 1.84
TRIM39Q9HCM9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM39Q9HCM9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM39Q9HCM9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.51■■□□□ 1.83
TRIM39Q9HCM9 MIR3665-201ENST00000578708 105 ntBASIC26.51■■□□□ 1.83
TRIM39Q9HCM9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TRIM39Q9HCM9 AC005559.1-201ENST00000589661 871 ntBASIC26.5■■□□□ 1.83
TRIM39Q9HCM9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.5■■□□□ 1.83
TRIM39Q9HCM9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM39Q9HCM9 AL162393.1-201ENST00000437852 946 ntBASIC26.49■■□□□ 1.83
TRIM39Q9HCM9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
TRIM39Q9HCM9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM39Q9HCM9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM39Q9HCM9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
TRIM39Q9HCM9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.47■■□□□ 1.83
TRIM39Q9HCM9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
TRIM39Q9HCM9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.46■■□□□ 1.83
TRIM39Q9HCM9 DUX4L28-201ENST00000623687 678 ntBASIC26.45■■□□□ 1.82
TRIM39Q9HCM9 AL161658.1-201ENST00000623641 1967 ntBASIC26.45■■□□□ 1.82
TRIM39Q9HCM9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.44■■□□□ 1.82
TRIM39Q9HCM9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM39Q9HCM9 RPS2P35-201ENST00000443417 897 ntBASIC26.44■■□□□ 1.82
TRIM39Q9HCM9 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM39Q9HCM9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms