Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.93■■■■□ 3.02
TRIM39Q9HCM9 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
TRIM39Q9HCM9 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.86
TRIM39Q9HCM9 AL356512.1-201ENST00000607453 1739 ntBASIC32.92■■■□□ 2.86
TRIM39Q9HCM9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
TRIM39Q9HCM9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
TRIM39Q9HCM9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.72■■■□□ 2.83
TRIM39Q9HCM9 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.33■■■□□ 2.77
TRIM39Q9HCM9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.1■■■□□ 2.73
TRIM39Q9HCM9 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.04■■■□□ 2.72
TRIM39Q9HCM9 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.03■■■□□ 2.72
TRIM39Q9HCM9 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.79■■■□□ 2.68
TRIM39Q9HCM9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.72■■■□□ 2.67
TRIM39Q9HCM9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.65■■■□□ 2.66
TRIM39Q9HCM9 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
TRIM39Q9HCM9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.49■■■□□ 2.63
TRIM39Q9HCM9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
TRIM39Q9HCM9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.32■■■□□ 2.6
TRIM39Q9HCM9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
TRIM39Q9HCM9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.2■■■□□ 2.59
TRIM39Q9HCM9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
TRIM39Q9HCM9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
TRIM39Q9HCM9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
TRIM39Q9HCM9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
TRIM39Q9HCM9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
TRIM39Q9HCM9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
TRIM39Q9HCM9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
TRIM39Q9HCM9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
TRIM39Q9HCM9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
TRIM39Q9HCM9 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
TRIM39Q9HCM9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.43■■■□□ 2.46
TRIM39Q9HCM9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
TRIM39Q9HCM9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
TRIM39Q9HCM9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.36■■■□□ 2.45
TRIM39Q9HCM9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM39Q9HCM9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.3■■■□□ 2.44
TRIM39Q9HCM9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.28■■■□□ 2.44
TRIM39Q9HCM9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRIM39Q9HCM9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.2■■■□□ 2.43
TRIM39Q9HCM9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
TRIM39Q9HCM9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
TRIM39Q9HCM9 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
TRIM39Q9HCM9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
TRIM39Q9HCM9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
TRIM39Q9HCM9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM39Q9HCM9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.99■■■□□ 2.39
TRIM39Q9HCM9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
TRIM39Q9HCM9 AC015813.7-201ENST00000623294 581 ntBASIC29.89■■■□□ 2.38
TRIM39Q9HCM9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
TRIM39Q9HCM9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
TRIM39Q9HCM9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
TRIM39Q9HCM9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
TRIM39Q9HCM9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
TRIM39Q9HCM9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.64■■■□□ 2.34
TRIM39Q9HCM9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.62■■■□□ 2.33
TRIM39Q9HCM9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.58■■■□□ 2.33
TRIM39Q9HCM9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
TRIM39Q9HCM9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.51■■■□□ 2.32
TRIM39Q9HCM9 AC006077.2-201ENST00000623591 457 ntBASIC29.51■■■□□ 2.31
TRIM39Q9HCM9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
TRIM39Q9HCM9 ZNRF2P1-201ENST00000441407 443 ntBASIC29.37■■■□□ 2.29
TRIM39Q9HCM9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
TRIM39Q9HCM9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.34■■■□□ 2.29
TRIM39Q9HCM9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
TRIM39Q9HCM9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
TRIM39Q9HCM9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
TRIM39Q9HCM9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
TRIM39Q9HCM9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TRIM39Q9HCM9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
TRIM39Q9HCM9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
TRIM39Q9HCM9 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
TRIM39Q9HCM9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
TRIM39Q9HCM9 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
TRIM39Q9HCM9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
TRIM39Q9HCM9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
TRIM39Q9HCM9 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
TRIM39Q9HCM9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
TRIM39Q9HCM9 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
TRIM39Q9HCM9 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
TRIM39Q9HCM9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
TRIM39Q9HCM9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.9■■■□□ 2.22
TRIM39Q9HCM9 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
TRIM39Q9HCM9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC28.88■■■□□ 2.21
TRIM39Q9HCM9 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
TRIM39Q9HCM9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
TRIM39Q9HCM9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
TRIM39Q9HCM9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
TRIM39Q9HCM9 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.83■■■□□ 2.21
TRIM39Q9HCM9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC28.83■■■□□ 2.21
TRIM39Q9HCM9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC28.74■■■□□ 2.19
TRIM39Q9HCM9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
TRIM39Q9HCM9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.19
TRIM39Q9HCM9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.69■■■□□ 2.18
TRIM39Q9HCM9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC28.69■■■□□ 2.18
TRIM39Q9HCM9 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.67■■■□□ 2.18
TRIM39Q9HCM9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
TRIM39Q9HCM9 AP002365.1-201ENST00000603448 772 ntBASIC28.65■■■□□ 2.18
TRIM39Q9HCM9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
TRIM39Q9HCM9 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.64■■■□□ 2.18
TRIM39Q9HCM9 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms