Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
BRF2Q9HAW0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
BRF2Q9HAW0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
BRF2Q9HAW0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.05■■□□□ 1.76
BRF2Q9HAW0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
BRF2Q9HAW0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
BRF2Q9HAW0 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
BRF2Q9HAW0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.01■■□□□ 1.75
BRF2Q9HAW0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.01■■□□□ 1.75
BRF2Q9HAW0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.01■■□□□ 1.75
BRF2Q9HAW0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
BRF2Q9HAW0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.98■■□□□ 1.75
BRF2Q9HAW0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.98■■□□□ 1.75
BRF2Q9HAW0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
BRF2Q9HAW0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF2Q9HAW0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
BRF2Q9HAW0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.96■■□□□ 1.75
BRF2Q9HAW0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.95■■□□□ 1.74
BRF2Q9HAW0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
BRF2Q9HAW0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
BRF2Q9HAW0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.94■■□□□ 1.74
BRF2Q9HAW0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
BRF2Q9HAW0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
BRF2Q9HAW0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.92■■□□□ 1.74
BRF2Q9HAW0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
BRF2Q9HAW0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.9■■□□□ 1.74
BRF2Q9HAW0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
BRF2Q9HAW0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.88■■□□□ 1.73
BRF2Q9HAW0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
BRF2Q9HAW0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
BRF2Q9HAW0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
BRF2Q9HAW0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
BRF2Q9HAW0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.84■■□□□ 1.73
BRF2Q9HAW0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.84■■□□□ 1.73
BRF2Q9HAW0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
BRF2Q9HAW0 AL133380.1-201ENST00000506013 324 ntBASIC25.83■■□□□ 1.73
BRF2Q9HAW0 AL161658.1-201ENST00000623641 1967 ntBASIC25.82■■□□□ 1.72
BRF2Q9HAW0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.81■■□□□ 1.72
BRF2Q9HAW0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
BRF2Q9HAW0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
BRF2Q9HAW0 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.8■■□□□ 1.72
BRF2Q9HAW0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.79■■□□□ 1.72
BRF2Q9HAW0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
BRF2Q9HAW0 WASH5P-204ENST00000632292 975 ntBASIC25.78■■□□□ 1.72
BRF2Q9HAW0 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
BRF2Q9HAW0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
BRF2Q9HAW0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
BRF2Q9HAW0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
BRF2Q9HAW0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
BRF2Q9HAW0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.77■■□□□ 1.72
BRF2Q9HAW0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
BRF2Q9HAW0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
BRF2Q9HAW0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
BRF2Q9HAW0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.74■■□□□ 1.71
BRF2Q9HAW0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
BRF2Q9HAW0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
BRF2Q9HAW0 ABCB10P1-201ENST00000614297 2181 ntBASIC25.73■■□□□ 1.71
BRF2Q9HAW0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
BRF2Q9HAW0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
BRF2Q9HAW0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.71■■□□□ 1.71
BRF2Q9HAW0 RARRES2P7-201ENST00000567349 469 ntBASIC25.71■■□□□ 1.71
BRF2Q9HAW0 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
BRF2Q9HAW0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
BRF2Q9HAW0 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
BRF2Q9HAW0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
BRF2Q9HAW0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
BRF2Q9HAW0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
BRF2Q9HAW0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
BRF2Q9HAW0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
BRF2Q9HAW0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
BRF2Q9HAW0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
BRF2Q9HAW0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
BRF2Q9HAW0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
BRF2Q9HAW0 SETD8P1-201ENST00000623146 1180 ntBASIC25.64■■□□□ 1.7
BRF2Q9HAW0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
BRF2Q9HAW0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
BRF2Q9HAW0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
BRF2Q9HAW0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRF2Q9HAW0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.62■■□□□ 1.69
BRF2Q9HAW0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRF2Q9HAW0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
BRF2Q9HAW0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
BRF2Q9HAW0 ST7-AS1-201ENST00000456775 1889 ntBASIC25.6■■□□□ 1.69
BRF2Q9HAW0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRF2Q9HAW0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
BRF2Q9HAW0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRF2Q9HAW0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
BRF2Q9HAW0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRF2Q9HAW0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
BRF2Q9HAW0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRF2Q9HAW0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRF2Q9HAW0 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF2Q9HAW0 AL135925.1-201ENST00000605920 1701 ntBASIC25.55■■□□□ 1.68
BRF2Q9HAW0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.54■■□□□ 1.68
BRF2Q9HAW0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms