Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.49■■■□□ 2.15
RNF139Q8WU17 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.49■■■□□ 2.15
RNF139Q8WU17 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RNF139Q8WU17 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RNF139Q8WU17 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
RNF139Q8WU17 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.47■■■□□ 2.15
RNF139Q8WU17 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
RNF139Q8WU17 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RNF139Q8WU17 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RNF139Q8WU17 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RNF139Q8WU17 WASH5P-204ENST00000632292 975 ntBASIC28.46■■■□□ 2.15
RNF139Q8WU17 AC120057.4-201ENST00000624722 1615 ntBASIC28.45■■■□□ 2.14
RNF139Q8WU17 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.45■■■□□ 2.14
RNF139Q8WU17 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
RNF139Q8WU17 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.45■■■□□ 2.14
RNF139Q8WU17 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
RNF139Q8WU17 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RNF139Q8WU17 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
RNF139Q8WU17 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RNF139Q8WU17 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
RNF139Q8WU17 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
RNF139Q8WU17 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.42■■■□□ 2.14
RNF139Q8WU17 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
RNF139Q8WU17 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.41■■■□□ 2.14
RNF139Q8WU17 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RNF139Q8WU17 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RNF139Q8WU17 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.39■■■□□ 2.14
RNF139Q8WU17 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RNF139Q8WU17 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RNF139Q8WU17 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RNF139Q8WU17 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RNF139Q8WU17 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
RNF139Q8WU17 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RNF139Q8WU17 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
RNF139Q8WU17 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RNF139Q8WU17 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RNF139Q8WU17 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
RNF139Q8WU17 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
RNF139Q8WU17 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
RNF139Q8WU17 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RNF139Q8WU17 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RNF139Q8WU17 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RNF139Q8WU17 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
RNF139Q8WU17 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RNF139Q8WU17 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RNF139Q8WU17 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.23■■■□□ 2.11
RNF139Q8WU17 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RNF139Q8WU17 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RNF139Q8WU17 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.23■■■□□ 2.11
RNF139Q8WU17 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.23■■■□□ 2.11
RNF139Q8WU17 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.21■■■□□ 2.11
RNF139Q8WU17 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.21■■■□□ 2.11
RNF139Q8WU17 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RNF139Q8WU17 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.21■■■□□ 2.11
RNF139Q8WU17 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.2■■■□□ 2.1
RNF139Q8WU17 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RNF139Q8WU17 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RNF139Q8WU17 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RNF139Q8WU17 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RNF139Q8WU17 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
RNF139Q8WU17 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RNF139Q8WU17 MIR762-201ENST00000390236 83 ntBASIC28.15■■■□□ 2.1
RNF139Q8WU17 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.14■■■□□ 2.1
RNF139Q8WU17 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RNF139Q8WU17 AP006261.1-201ENST00000584783 668 ntBASIC28.13■■■□□ 2.09
RNF139Q8WU17 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RNF139Q8WU17 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.13■■■□□ 2.09
RNF139Q8WU17 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RNF139Q8WU17 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RNF139Q8WU17 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RNF139Q8WU17 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.1■■■□□ 2.09
RNF139Q8WU17 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.1■■■□□ 2.09
RNF139Q8WU17 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
RNF139Q8WU17 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RNF139Q8WU17 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.09■■■□□ 2.09
RNF139Q8WU17 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RNF139Q8WU17 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RNF139Q8WU17 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
RNF139Q8WU17 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.06■■■□□ 2.08
RNF139Q8WU17 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RNF139Q8WU17 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.05■■■□□ 2.08
RNF139Q8WU17 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
RNF139Q8WU17 AC005559.1-201ENST00000589661 871 ntBASIC28.05■■■□□ 2.08
RNF139Q8WU17 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RNF139Q8WU17 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RNF139Q8WU17 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
RNF139Q8WU17 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.04■■■□□ 2.08
RNF139Q8WU17 MIR3665-201ENST00000578708 105 ntBASIC28.04■■■□□ 2.08
RNF139Q8WU17 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RNF139Q8WU17 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
RNF139Q8WU17 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RNF139Q8WU17 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.03■■■□□ 2.08
RNF139Q8WU17 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.03■■■□□ 2.08
RNF139Q8WU17 AL162393.1-201ENST00000437852 946 ntBASIC28.03■■■□□ 2.08
RNF139Q8WU17 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
RNF139Q8WU17 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RNF139Q8WU17 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
RNF139Q8WU17 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.02■■■□□ 2.08
RNF139Q8WU17 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RNF139Q8WU17 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms