Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.84■■■■□ 3.33
RNF139Q8WU17 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
RNF139Q8WU17 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
RNF139Q8WU17 AL356512.1-201ENST00000607453 1739 ntBASIC34.78■■■■□ 3.16
RNF139Q8WU17 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
RNF139Q8WU17 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
RNF139Q8WU17 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.59■■■■□ 3.13
RNF139Q8WU17 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.12■■■■□ 3.05
RNF139Q8WU17 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.93■■■■□ 3.02
RNF139Q8WU17 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.87■■■■□ 3.01
RNF139Q8WU17 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.8■■■■□ 3
RNF139Q8WU17 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.69■■■□□ 2.98
RNF139Q8WU17 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.58■■■□□ 2.97
RNF139Q8WU17 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.53■■■□□ 2.96
RNF139Q8WU17 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.28■■■□□ 2.92
RNF139Q8WU17 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.27■■■□□ 2.92
RNF139Q8WU17 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
RNF139Q8WU17 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.12■■■□□ 2.89
RNF139Q8WU17 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
RNF139Q8WU17 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.04■■■□□ 2.88
RNF139Q8WU17 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
RNF139Q8WU17 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.61■■■□□ 2.81
RNF139Q8WU17 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
RNF139Q8WU17 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
RNF139Q8WU17 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
RNF139Q8WU17 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
RNF139Q8WU17 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.34■■■□□ 2.77
RNF139Q8WU17 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.33■■■□□ 2.77
RNF139Q8WU17 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.33■■■□□ 2.77
RNF139Q8WU17 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RNF139Q8WU17 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RNF139Q8WU17 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.21■■■□□ 2.75
RNF139Q8WU17 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
RNF139Q8WU17 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
RNF139Q8WU17 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
RNF139Q8WU17 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.07■■■□□ 2.72
RNF139Q8WU17 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
RNF139Q8WU17 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RNF139Q8WU17 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC32■■■□□ 2.71
RNF139Q8WU17 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
RNF139Q8WU17 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.71
RNF139Q8WU17 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.92■■■□□ 2.7
RNF139Q8WU17 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RNF139Q8WU17 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.77■■■□□ 2.68
RNF139Q8WU17 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
RNF139Q8WU17 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
RNF139Q8WU17 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.66■■■□□ 2.66
RNF139Q8WU17 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
RNF139Q8WU17 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RNF139Q8WU17 AC015813.7-201ENST00000623294 581 ntBASIC31.56■■■□□ 2.64
RNF139Q8WU17 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RNF139Q8WU17 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RNF139Q8WU17 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
RNF139Q8WU17 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.37■■■□□ 2.61
RNF139Q8WU17 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RNF139Q8WU17 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.31■■■□□ 2.6
RNF139Q8WU17 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RNF139Q8WU17 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RNF139Q8WU17 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.27■■■□□ 2.6
RNF139Q8WU17 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RNF139Q8WU17 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.21■■■□□ 2.59
RNF139Q8WU17 AC006077.2-201ENST00000623591 457 ntBASIC31.18■■■□□ 2.58
RNF139Q8WU17 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
RNF139Q8WU17 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RNF139Q8WU17 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RNF139Q8WU17 ZNRF2P1-201ENST00000441407 443 ntBASIC31.04■■■□□ 2.56
RNF139Q8WU17 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
RNF139Q8WU17 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.98■■■□□ 2.55
RNF139Q8WU17 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RNF139Q8WU17 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
RNF139Q8WU17 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
RNF139Q8WU17 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RNF139Q8WU17 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
RNF139Q8WU17 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
RNF139Q8WU17 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
RNF139Q8WU17 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RNF139Q8WU17 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.52
RNF139Q8WU17 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RNF139Q8WU17 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
RNF139Q8WU17 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.69■■■□□ 2.5
RNF139Q8WU17 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
RNF139Q8WU17 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.64■■■□□ 2.5
RNF139Q8WU17 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
RNF139Q8WU17 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RNF139Q8WU17 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RNF139Q8WU17 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
RNF139Q8WU17 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RNF139Q8WU17 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
RNF139Q8WU17 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.51■■■□□ 2.47
RNF139Q8WU17 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.51■■■□□ 2.47
RNF139Q8WU17 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
RNF139Q8WU17 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
RNF139Q8WU17 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
RNF139Q8WU17 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.47■■■□□ 2.47
RNF139Q8WU17 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
RNF139Q8WU17 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.35■■■□□ 2.45
RNF139Q8WU17 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.31■■■□□ 2.44
RNF139Q8WU17 AP002365.1-201ENST00000603448 772 ntBASIC30.31■■■□□ 2.44
RNF139Q8WU17 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RNF139Q8WU17 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms