Protein–RNA interactions for Protein: Q7Z7F7

MRPL55, 39S ribosomal protein L55, mitochondrial, humanhuman

Known RBP Predictions only

Length 128 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55Q7Z7F7 AL031258.1-201ENST00000623562 325 ntBASIC17.32■□□□□ 0.36
MRPL55Q7Z7F7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MRPL55Q7Z7F7 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC17.31■□□□□ 0.36
MRPL55Q7Z7F7 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MRPL55Q7Z7F7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
MRPL55Q7Z7F7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MRPL55Q7Z7F7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC17.28■□□□□ 0.36
MRPL55Q7Z7F7 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MRPL55Q7Z7F7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC17.27■□□□□ 0.36
MRPL55Q7Z7F7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
MRPL55Q7Z7F7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MRPL55Q7Z7F7 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRPL55Q7Z7F7 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRPL55Q7Z7F7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MRPL55Q7Z7F7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRPL55Q7Z7F7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRPL55Q7Z7F7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MRPL55Q7Z7F7 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRPL55Q7Z7F7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRPL55Q7Z7F7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRPL55Q7Z7F7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRPL55Q7Z7F7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MRPL55Q7Z7F7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MRPL55Q7Z7F7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MRPL55Q7Z7F7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
MRPL55Q7Z7F7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.14■□□□□ 0.33
MRPL55Q7Z7F7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC17.13■□□□□ 0.33
MRPL55Q7Z7F7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MRPL55Q7Z7F7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MRPL55Q7Z7F7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MRPL55Q7Z7F7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MRPL55Q7Z7F7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
MRPL55Q7Z7F7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MRPL55Q7Z7F7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MRPL55Q7Z7F7 ABCB10P1-201ENST00000614297 2181 ntBASIC17.08■□□□□ 0.33
MRPL55Q7Z7F7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MRPL55Q7Z7F7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC17.08■□□□□ 0.32
MRPL55Q7Z7F7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRPL55Q7Z7F7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRPL55Q7Z7F7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
MRPL55Q7Z7F7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC17.05■□□□□ 0.32
MRPL55Q7Z7F7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRPL55Q7Z7F7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRPL55Q7Z7F7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 AL161658.1-201ENST00000623641 1967 ntBASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MRPL55Q7Z7F7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
MRPL55Q7Z7F7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MRPL55Q7Z7F7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRPL55Q7Z7F7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC17■□□□□ 0.31
MRPL55Q7Z7F7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MRPL55Q7Z7F7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MRPL55Q7Z7F7 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms