Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
PTCHD3Q3KNS1 AC136428.2-201ENST00000563187 214 ntBASIC26.61■■□□□ 1.85
PTCHD3Q3KNS1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.6■■□□□ 1.85
PTCHD3Q3KNS1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.6■■□□□ 1.85
PTCHD3Q3KNS1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PTCHD3Q3KNS1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PTCHD3Q3KNS1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PTCHD3Q3KNS1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
PTCHD3Q3KNS1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.54■■□□□ 1.84
PTCHD3Q3KNS1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
PTCHD3Q3KNS1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PTCHD3Q3KNS1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PTCHD3Q3KNS1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
PTCHD3Q3KNS1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTCHD3Q3KNS1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTCHD3Q3KNS1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.51■■□□□ 1.83
PTCHD3Q3KNS1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC26.51■■□□□ 1.83
PTCHD3Q3KNS1 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.5■■□□□ 1.83
PTCHD3Q3KNS1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.49■■□□□ 1.83
PTCHD3Q3KNS1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PTCHD3Q3KNS1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTCHD3Q3KNS1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.48■■□□□ 1.83
PTCHD3Q3KNS1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
PTCHD3Q3KNS1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCHD3Q3KNS1 SUZ12P1-203ENST00000578195 985 ntBASIC26.42■■□□□ 1.82
PTCHD3Q3KNS1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCHD3Q3KNS1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCHD3Q3KNS1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.41■■□□□ 1.82
PTCHD3Q3KNS1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCHD3Q3KNS1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCHD3Q3KNS1 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PTCHD3Q3KNS1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
PTCHD3Q3KNS1 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
PTCHD3Q3KNS1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PTCHD3Q3KNS1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.38■■□□□ 1.81
PTCHD3Q3KNS1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
PTCHD3Q3KNS1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCHD3Q3KNS1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTCHD3Q3KNS1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PTCHD3Q3KNS1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.35■■□□□ 1.81
PTCHD3Q3KNS1 AL133380.1-201ENST00000506013 324 ntBASIC26.35■■□□□ 1.81
PTCHD3Q3KNS1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
PTCHD3Q3KNS1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCHD3Q3KNS1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PTCHD3Q3KNS1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.33■■□□□ 1.81
PTCHD3Q3KNS1 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.32■■□□□ 1.8
PTCHD3Q3KNS1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.31■■□□□ 1.8
PTCHD3Q3KNS1 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCHD3Q3KNS1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCHD3Q3KNS1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCHD3Q3KNS1 CAHM-201ENST00000604200 896 ntBASIC26.3■■□□□ 1.8
PTCHD3Q3KNS1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCHD3Q3KNS1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCHD3Q3KNS1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCHD3Q3KNS1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCHD3Q3KNS1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCHD3Q3KNS1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTCHD3Q3KNS1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.26■■□□□ 1.79
PTCHD3Q3KNS1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCHD3Q3KNS1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
PTCHD3Q3KNS1 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCHD3Q3KNS1 AL391121.1-201ENST00000607967 1349 ntBASIC26.22■■□□□ 1.79
PTCHD3Q3KNS1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
PTCHD3Q3KNS1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PTCHD3Q3KNS1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.21■■□□□ 1.79
PTCHD3Q3KNS1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
PTCHD3Q3KNS1 WASH5P-204ENST00000632292 975 ntBASIC26.2■■□□□ 1.78
PTCHD3Q3KNS1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCHD3Q3KNS1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCHD3Q3KNS1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PTCHD3Q3KNS1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
PTCHD3Q3KNS1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
PTCHD3Q3KNS1 AL161658.1-201ENST00000623641 1967 ntBASIC26.18■■□□□ 1.78
PTCHD3Q3KNS1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PTCHD3Q3KNS1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PTCHD3Q3KNS1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
PTCHD3Q3KNS1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTCHD3Q3KNS1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PTCHD3Q3KNS1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PTCHD3Q3KNS1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
PTCHD3Q3KNS1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PTCHD3Q3KNS1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.13■■□□□ 1.77
PTCHD3Q3KNS1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PTCHD3Q3KNS1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.13■■□□□ 1.77
PTCHD3Q3KNS1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PTCHD3Q3KNS1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PTCHD3Q3KNS1 RPS2P35-201ENST00000443417 897 ntBASIC26.11■■□□□ 1.77
PTCHD3Q3KNS1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PTCHD3Q3KNS1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
PTCHD3Q3KNS1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTCHD3Q3KNS1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.09■■□□□ 1.77
PTCHD3Q3KNS1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PTCHD3Q3KNS1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
PTCHD3Q3KNS1 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
PTCHD3Q3KNS1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC26.07■■□□□ 1.76
PTCHD3Q3KNS1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PTCHD3Q3KNS1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PTCHD3Q3KNS1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCHD3Q3KNS1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCHD3Q3KNS1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms