Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CIITAP33076 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.87■■■□□ 2.53
CIITAP33076 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.87■■■□□ 2.53
CIITAP33076 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CIITAP33076 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.86■■■□□ 2.53
CIITAP33076 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CIITAP33076 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
CIITAP33076 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
CIITAP33076 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CIITAP33076 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CIITAP33076 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.83■■■□□ 2.53
CIITAP33076 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CIITAP33076 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CIITAP33076 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CIITAP33076 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.79■■■□□ 2.52
CIITAP33076 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.79■■■□□ 2.52
CIITAP33076 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CIITAP33076 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CIITAP33076 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CIITAP33076 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.74■■■□□ 2.51
CIITAP33076 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CIITAP33076 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CIITAP33076 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
CIITAP33076 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CIITAP33076 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CIITAP33076 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
CIITAP33076 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CIITAP33076 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CIITAP33076 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.69■■■□□ 2.5
CIITAP33076 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CIITAP33076 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.67■■■□□ 2.5
CIITAP33076 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CIITAP33076 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CIITAP33076 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CIITAP33076 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
CIITAP33076 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CIITAP33076 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
CIITAP33076 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.64■■■□□ 2.5
CIITAP33076 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CIITAP33076 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.62■■■□□ 2.49
CIITAP33076 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CIITAP33076 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
CIITAP33076 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CIITAP33076 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CIITAP33076 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
CIITAP33076 MIR762-201ENST00000390236 83 ntBASIC30.56■■■□□ 2.48
CIITAP33076 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.56■■■□□ 2.48
CIITAP33076 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.55■■■□□ 2.48
CIITAP33076 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CIITAP33076 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CIITAP33076 AP006261.1-201ENST00000584783 668 ntBASIC30.51■■■□□ 2.47
CIITAP33076 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
CIITAP33076 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CIITAP33076 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.5■■■□□ 2.47
CIITAP33076 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.49■■■□□ 2.47
CIITAP33076 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.49■■■□□ 2.47
CIITAP33076 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CIITAP33076 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CIITAP33076 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CIITAP33076 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
CIITAP33076 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CIITAP33076 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CIITAP33076 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
CIITAP33076 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CIITAP33076 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CIITAP33076 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
CIITAP33076 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CIITAP33076 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
CIITAP33076 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CIITAP33076 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
CIITAP33076 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.45■■■□□ 2.47
CIITAP33076 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.44■■■□□ 2.46
CIITAP33076 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.44■■■□□ 2.46
CIITAP33076 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.44■■■□□ 2.46
CIITAP33076 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.44■■■□□ 2.46
CIITAP33076 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CIITAP33076 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CIITAP33076 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.43■■■□□ 2.46
CIITAP33076 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CIITAP33076 AL162393.1-201ENST00000437852 946 ntBASIC30.43■■■□□ 2.46
CIITAP33076 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
CIITAP33076 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CIITAP33076 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CIITAP33076 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.4■■■□□ 2.46
CIITAP33076 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
CIITAP33076 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CIITAP33076 MIR3665-201ENST00000578708 105 ntBASIC30.4■■■□□ 2.46
CIITAP33076 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CIITAP33076 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CIITAP33076 AC005559.1-201ENST00000589661 871 ntBASIC30.39■■■□□ 2.46
CIITAP33076 DUX4L28-201ENST00000623687 678 ntBASIC30.39■■■□□ 2.46
CIITAP33076 AL161658.1-201ENST00000623641 1967 ntBASIC30.39■■■□□ 2.46
CIITAP33076 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.38■■■□□ 2.45
CIITAP33076 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CIITAP33076 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CIITAP33076 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CIITAP33076 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CIITAP33076 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CIITAP33076 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CIITAP33076 RPS2P35-201ENST00000443417 897 ntBASIC30.33■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms