Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CTDNEP1O95476 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.76■■■□□ 2.67
CTDNEP1O95476 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CTDNEP1O95476 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CTDNEP1O95476 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.73■■■□□ 2.67
CTDNEP1O95476 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
CTDNEP1O95476 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CTDNEP1O95476 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.7■■■□□ 2.67
CTDNEP1O95476 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.7■■■□□ 2.67
CTDNEP1O95476 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.7■■■□□ 2.66
CTDNEP1O95476 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.69■■■□□ 2.66
CTDNEP1O95476 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.69■■■□□ 2.66
CTDNEP1O95476 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.66■■■□□ 2.66
CTDNEP1O95476 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTDNEP1O95476 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTDNEP1O95476 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.62■■■□□ 2.65
CTDNEP1O95476 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.62■■■□□ 2.65
CTDNEP1O95476 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CTDNEP1O95476 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CTDNEP1O95476 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CTDNEP1O95476 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
CTDNEP1O95476 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.58■■■□□ 2.65
CTDNEP1O95476 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.57■■■□□ 2.64
CTDNEP1O95476 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.57■■■□□ 2.64
CTDNEP1O95476 AL133380.1-201ENST00000506013 324 ntBASIC31.56■■■□□ 2.64
CTDNEP1O95476 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CTDNEP1O95476 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CTDNEP1O95476 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.51■■■□□ 2.64
CTDNEP1O95476 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.51■■■□□ 2.63
CTDNEP1O95476 AL161658.1-201ENST00000623641 1967 ntBASIC31.5■■■□□ 2.63
CTDNEP1O95476 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CTDNEP1O95476 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.48■■■□□ 2.63
CTDNEP1O95476 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CTDNEP1O95476 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CTDNEP1O95476 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.46■■■□□ 2.63
CTDNEP1O95476 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CTDNEP1O95476 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CTDNEP1O95476 ABCB10P1-201ENST00000614297 2181 ntBASIC31.44■■■□□ 2.62
CTDNEP1O95476 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.44■■■□□ 2.62
CTDNEP1O95476 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CTDNEP1O95476 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CTDNEP1O95476 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CTDNEP1O95476 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.42■■■□□ 2.62
CTDNEP1O95476 WASH5P-204ENST00000632292 975 ntBASIC31.41■■■□□ 2.62
CTDNEP1O95476 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
CTDNEP1O95476 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CTDNEP1O95476 RARRES2P7-201ENST00000567349 469 ntBASIC31.4■■■□□ 2.62
CTDNEP1O95476 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.39■■■□□ 2.62
CTDNEP1O95476 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CTDNEP1O95476 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CTDNEP1O95476 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CTDNEP1O95476 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CTDNEP1O95476 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CTDNEP1O95476 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CTDNEP1O95476 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.36■■■□□ 2.61
CTDNEP1O95476 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CTDNEP1O95476 SETD8P1-201ENST00000623146 1180 ntBASIC31.34■■■□□ 2.61
CTDNEP1O95476 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CTDNEP1O95476 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
CTDNEP1O95476 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CTDNEP1O95476 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CTDNEP1O95476 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CTDNEP1O95476 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.31■■■□□ 2.6
CTDNEP1O95476 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CTDNEP1O95476 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CTDNEP1O95476 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
CTDNEP1O95476 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.3■■■□□ 2.6
CTDNEP1O95476 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CTDNEP1O95476 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CTDNEP1O95476 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CTDNEP1O95476 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
CTDNEP1O95476 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
CTDNEP1O95476 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
CTDNEP1O95476 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
CTDNEP1O95476 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.22■■■□□ 2.59
CTDNEP1O95476 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.21■■■□□ 2.59
CTDNEP1O95476 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.59
CTDNEP1O95476 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
CTDNEP1O95476 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CTDNEP1O95476 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CTDNEP1O95476 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CTDNEP1O95476 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.18■■■□□ 2.58
CTDNEP1O95476 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 AC136428.2-201ENST00000563187 214 ntBASIC31.18■■■□□ 2.58
CTDNEP1O95476 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.18■■■□□ 2.58
CTDNEP1O95476 ST7-AS1-201ENST00000456775 1889 ntBASIC31.18■■■□□ 2.58
CTDNEP1O95476 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CTDNEP1O95476 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CTDNEP1O95476 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CTDNEP1O95476 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CTDNEP1O95476 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CTDNEP1O95476 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
CTDNEP1O95476 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CTDNEP1O95476 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CTDNEP1O95476 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 7.5 ms