Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TAF15-213ENST00000605197 760 ntTSL 214.03□□□□□ -0.162e-8■■■■■ 40.2
SF3B1O75533 EEF2-205ENST00000598436 549 ntTSL 213.8□□□□□ -0.24e-6■■■■■ 40.2
SF3B1O75533 NAT9-204ENST00000578822 839 ntTSL 3 BASIC13.71□□□□□ -0.213e-9■■■■■ 40.2
SF3B1O75533 SNRNP200-202ENST00000429650 2637 ntTSL 213.66□□□□□ -0.222e-8■■■■■ 40.2
SF3B1O75533 DEDD-203ENST00000458050 2300 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.262e-8■■■■■ 40.2
SF3B1O75533 NAT9-219ENST00000582524 573 ntTSL 4 BASIC13.35□□□□□ -0.273e-9■■■■■ 40.2
SF3B1O75533 DEDD-211ENST00000496632 875 ntTSL 313.03□□□□□ -0.322e-8■■■■■ 40.2
SF3B1O75533 RAPGEF1-207ENST00000481260 1034 ntTSL 512.43□□□□□ -0.422e-8■■■■■ 40.2
SF3B1O75533 TCF25-206ENST00000562193 627 ntTSL 312.38□□□□□ -0.432e-8■■■■■ 40.2
SF3B1O75533 DEDD-204ENST00000463227 954 ntTSL 212.37□□□□□ -0.432e-8■■■■■ 40.2
SF3B1O75533 DEDD-210ENST00000490843 1527 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.482e-8■■■■■ 40.2
SF3B1O75533 SNRNP200-208ENST00000497539 2666 ntTSL 1 (best)11.94□□□□□ -0.52e-8■■■■■ 40.2
SF3B1O75533 FAM53C-201ENST00000239906 4377 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.612e-8■■■■■ 40.2
SF3B1O75533 RPL32-203ENST00000396957 1749 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.642e-8■■■■■ 40.2
SF3B1O75533 DEDD-207ENST00000473679 869 ntTSL 310.93□□□□□ -0.662e-8■■■■■ 40.2
SF3B1O75533 RPL32-204ENST00000429711 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.752e-8■■■■■ 40.2
SF3B1O75533 RPL32-201ENST00000273223 567 ntTSL 3 BASIC10.17□□□□□ -0.782e-8■■■■■ 40.2
SF3B1O75533 ZNF146-203ENST00000586094 565 ntTSL 28.54□□□□□ -1.042e-8■■■■■ 40.2
SF3B1O75533 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.082e-8■■■■■ 40.2
SF3B1O75533 MECP2-209ENST00000486506 2907 ntTSL 57.82□□□□□ -1.162e-8■■■■■ 40.2
SF3B1O75533 MECP2-225ENST00000638041 100 ntTSL 57.81□□□□□ -1.162e-8■■■■■ 40.2
SF3B1O75533 UTP6-203ENST00000477860 476 ntTSL 37.65□□□□□ -1.182e-8■■■■■ 40.2
SF3B1O75533 HP1BP3-214ENST00000491748 706 ntTSL 57.44□□□□□ -1.222e-8■■■■■ 40.2
SF3B1O75533 KDM3A-210ENST00000470160 2955 ntTSL 27.37□□□□□ -1.232e-8■■■■■ 40.2
SF3B1O75533 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.242e-8■■■■■ 40.2
SF3B1O75533 KANSL1-216ENST00000577114 629 ntTSL 57.01□□□□□ -1.292e-8■■■■■ 40.2
SF3B1O75533 RPL32-207ENST00000452606 631 ntTSL 27.01□□□□□ -1.292e-8■■■■■ 40.2
SF3B1O75533 RPL32-208ENST00000457131 555 ntTSL 26.18□□□□□ -1.422e-8■■■■■ 40.2
SF3B1O75533 DEDD-209ENST00000489249 1116 ntTSL 25.9□□□□□ -1.472e-8■■■■■ 40.2
SF3B1O75533 EIF4A2-217ENST00000475409 802 ntTSL 25.64□□□□□ -1.512e-8■■■■■ 40.2
SF3B1O75533 KDM3A-214ENST00000491383 4485 ntTSL 1 (best)5.21□□□□□ -1.582e-8■■■■■ 40.2
SF3B1O75533 CNOT6-204ENST00000504343 706 ntTSL 34.95□□□□□ -1.622e-8■■■■■ 40.2
SF3B1O75533 UTP6-204ENST00000484661 694 ntTSL 24.93□□□□□ -1.622e-8■■■■■ 40.2
SF3B1O75533 KDM3A-211ENST00000483866 449 ntTSL 34.63□□□□□ -1.672e-8■■■■■ 40.2
SF3B1O75533 CRLS1-207ENST00000609154 977 ntTSL 1 (best)4.35□□□□□ -1.712e-8■■■■■ 40.2
SF3B1O75533 ZNF146-205ENST00000591063 533 ntTSL 24.21□□□□□ -1.742e-8■■■■■ 40.2
SF3B1O75533 PRKCI-206ENST00000488541 332 ntTSL 24.13□□□□□ -1.752e-8■■■■■ 40.2
SF3B1O75533 EIF4A2-213ENST00000465792 734 ntTSL 23.38□□□□□ -1.872e-8■■■■■ 40.2
SF3B1O75533 CRLS1-206ENST00000489345 644 ntTSL 52.73□□□□□ -1.972e-8■■■■■ 40.2
SF3B1O75533 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.68□□□□□ -1.982e-8■■■■■ 40.2
SF3B1O75533 PRKCI-207ENST00000493761 536 ntTSL 22.22□□□□□ -2.052e-8■■■■■ 40.2
SF3B1O75533 KDM3A-207ENST00000462197 448 ntTSL 31.44□□□□□ -2.182e-8■■■■■ 40.2
SF3B1O75533 DAZAP1-209ENST00000590419 508 ntTSL 316■□□□□ 0.157e-7■■■■■ 40.2
SF3B1O75533 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.43e-6■■■■■ 40.2
SF3B1O75533 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.43e-6■■■■■ 40.2
SF3B1O75533 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.67□□□□□ -1.343e-6■■■■■ 40.2
SF3B1O75533 METTL9-207ENST00000567404 763 ntTSL 35.66□□□□□ -1.53e-6■■■■■ 40.2
SF3B1O75533 METTL9-208ENST00000568826 376 ntTSL 34.16□□□□□ -1.743e-6■■■■■ 40.2
SF3B1O75533 RIPOR3-201ENST00000045083 4279 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.441e-6■■■■■ 40.2
SF3B1O75533 TMEM248-205ENST00000433271 1610 ntTSL 1 (best)28.2■■■□□ 2.14e-7■■■■■ 40.1
SF3B1O75533 CXXC1-216ENST00000591474 845 ntTSL 324.94■■□□□ 1.584e-7■■■■■ 40.1
SF3B1O75533 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.464e-10■■■■■ 40.1
SF3B1O75533 LRRC75A-AS1-218ENST00000578380 310 ntTSL 323.6■■□□□ 1.374e-7■■■■■ 40.1
SF3B1O75533 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.59■■□□□ 1.374e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.294e-10■■■■■ 40.1
SF3B1O75533 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.24e-10■■■■■ 40.1
SF3B1O75533 RAI14-224ENST00000514527 660 ntTSL 321.62■■□□□ 1.054e-7■■■■■ 40.1
SF3B1O75533 RAI14-215ENST00000510319 557 ntTSL 421.37■■□□□ 1.014e-7■■■■■ 40.1
SF3B1O75533 CXXC1-207ENST00000586837 838 ntTSL 521.19■□□□□ 0.984e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.974e-10■■■■■ 40.1
SF3B1O75533 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.954e-7■■■■■ 40.1
SF3B1O75533 CDC16-210ENST00000494766 1003 ntTSL 220.96■□□□□ 0.954e-7■■■■■ 40.1
SF3B1O75533 SCAMP2-206ENST00000565345 790 ntTSL 520.87■□□□□ 0.934e-10■■■■■ 40.1
SF3B1O75533 EPHB4-207ENST00000489808 921 ntTSL 1 (best)20.86■□□□□ 0.934e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-206ENST00000577929 696 ntTSL 220.81■□□□□ 0.924e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-214ENST00000490474 2086 ntTSL 520.71■□□□□ 0.914e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.62■□□□□ 0.894e-10■■■■■ 40.1
SF3B1O75533 PIEZO1-207ENST00000475586 560 ntTSL 420.56■□□□□ 0.884e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.39■□□□□ 0.854e-10■■■■■ 40.1
SF3B1O75533 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.824e-7■■■■■ 40.1
SF3B1O75533 AP2S1-208ENST00000600964 458 ntTSL 1 (best)20.15■□□□□ 0.824e-10■■■■■ 40.1
SF3B1O75533 CAPN15-205ENST00000567216 3174 ntTSL 1 (best)20.08■□□□□ 0.814e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.92■□□□□ 0.784e-10■■■■■ 40.1
SF3B1O75533 CXXC1-211ENST00000589548 849 ntTSL 319.9■□□□□ 0.784e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-212ENST00000477914 2063 ntTSL 519.9■□□□□ 0.784e-10■■■■■ 40.1
SF3B1O75533 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.84■□□□□ 0.774e-7■■■■■ 40.1
SF3B1O75533 MAD1L1-211ENST00000445959 831 ntTSL 319.76■□□□□ 0.754e-7■■■■■ 40.1
SF3B1O75533 PIEZO1-206ENST00000474606 544 ntTSL 419.73■□□□□ 0.754e-7■■■■■ 40.1
SF3B1O75533 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.67■□□□□ 0.744e-10■■■■■ 40.1
SF3B1O75533 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.67■□□□□ 0.744e-10■■■■■ 40.1
SF3B1O75533 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.744e-7■■■■■ 40.1
SF3B1O75533 VIM-203ENST00000469543 2666 ntTSL 219.47■□□□□ 0.714e-7■■■■■ 40.1
SF3B1O75533 PGAP2-222ENST00000487112 792 ntTSL 319.24■□□□□ 0.674e-7■■■■■ 40.1
SF3B1O75533 SEC13-218ENST00000490283 740 ntTSL 219.15■□□□□ 0.664e-7■■■■■ 40.1
SF3B1O75533 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.634e-7■■■■■ 40.1
SF3B1O75533 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.624e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-211ENST00000475881 536 ntTSL 1 (best)18.74■□□□□ 0.594e-10■■■■■ 40.1
SF3B1O75533 PGAP2-221ENST00000485602 832 ntTSL 518.65■□□□□ 0.584e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-216ENST00000580888 710 ntTSL 218.63■□□□□ 0.574e-10■■■■■ 40.1
SF3B1O75533 VIM-209ENST00000544301 2135 ntAPPRIS P1 TSL 1 (best)18.58■□□□□ 0.564e-7■■■■■ 40.1
SF3B1O75533 VIM-205ENST00000485947 1139 ntTSL 218.52■□□□□ 0.564e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-209ENST00000461744 2098 ntTSL 518.48■□□□□ 0.554e-10■■■■■ 40.1
SF3B1O75533 PFKFB3-210ENST00000467491 2131 ntTSL 518.48■□□□□ 0.554e-10■■■■■ 40.1
SF3B1O75533 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.46■□□□□ 0.554e-10■■■■■ 40.1
SF3B1O75533 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.45■□□□□ 0.544e-7■■■■■ 40.1
SF3B1O75533 VIM-206ENST00000487938 2272 ntTSL 518.34■□□□□ 0.534e-7■■■■■ 40.1
SF3B1O75533 PFKFB3-207ENST00000441697 244 ntTSL 1 (best)18.11■□□□□ 0.494e-10■■■■■ 40.1
SF3B1O75533 EPHB4-204ENST00000477446 1551 ntTSL 1 (best)18.06■□□□□ 0.484e-7■■■■■ 40.1
SF3B1O75533 EIF4A1-208ENST00000578476 573 ntTSL 217.95■□□□□ 0.464e-10■■■■■ 40.1
SF3B1O75533 SCAMP2-208ENST00000566557 585 ntTSL 217.7■□□□□ 0.424e-10■■■■■ 40.1
Retrieved 100 of 46,956 protein–RNA pairs in 3581.6 ms