RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 NISCHQ9Y2I1 1504 aa38.46■■■■□ 3.75
VIM-209ENST00000544301 CCDC180Q9P1Z9 1646 aa32.95■■■□□ 2.87
VIM-209ENST00000544301 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
VIM-209ENST00000544301 SHROOM4Q9ULL8 1493 aa32.29■■■□□ 2.76
VIM-209ENST00000544301 DCAF8L2P0C7V8 631 aa31.7■■■□□ 2.66
VIM-209ENST00000544301 DCAF1Q9Y4B6 1507 aa31.67■■■□□ 2.66
VIM-209ENST00000544301 SUPT5HO00267 1087 aaKnown RBP31.52■■■□□ 2.64
VIM-209ENST00000544301 MYO15BQ96JP2 1530 aa30.91■■■□□ 2.54
VIM-209ENST00000544301 SCRIBQ14160 1630 aa30.66■■■□□ 2.5
VIM-209ENST00000544301 CHIC1Q5VXU3 224 aa30.59■■■□□ 2.49
VIM-209ENST00000544301 ABCC9O60706 1549 aa30.58■■■□□ 2.49
VIM-209ENST00000544301 NACADO15069 1562 aa30.51■■■□□ 2.48
VIM-209ENST00000544301 RSF1Q96T23 1441 aaPredicted RBP30.26■■■□□ 2.43
VIM-209ENST00000544301 RB1CC1Q8TDY2 1594 aa30.05■■■□□ 2.4
VIM-209ENST00000544301 CECR2Q9BXF3 1484 aa29.93■■■□□ 2.38
VIM-209ENST00000544301 MROH2BQ7Z745 1585 aa29.83■■■□□ 2.37
VIM-209ENST00000544301 WIZO95785 1651 aa29.64■■■□□ 2.34
VIM-209ENST00000544301 LOC105371045A0A1W2PR82 267 aa29.58■■■□□ 2.33
VIM-209ENST00000544301 BAZ1AQ9NRL2 1556 aaPredicted RBP29.58■■■□□ 2.33
VIM-209ENST00000544301 UNC13AQ9UPW8 1703 aa29.57■■■□□ 2.32
VIM-209ENST00000544301 TRIM41Q8WV44 630 aa29.47■■■□□ 2.31
VIM-209ENST00000544301 SMARCA4P51532 1647 aa29.36■■■□□ 2.29
VIM-209ENST00000544301 TOP2AP11388 1531 aaKnown RBP29.25■■■□□ 2.27
VIM-209ENST00000544301 BICRAQ9NZM4 1560 aa29.23■■■□□ 2.27
VIM-209ENST00000544301 PCGF6Q9BYE7 350 aa29.2■■■□□ 2.27
VIM-209ENST00000544301 EIF4G1Q04637 1599 aaKnown RBP29.18■■■□□ 2.26
VIM-209ENST00000544301 PABPN1Q86U42 306 aaKnown RBP eCLIP29.12■■■□□ 2.25
VIM-209ENST00000544301 FAM9AQ8IZU1 332 aaPredicted RBP29.09■■■□□ 2.25
VIM-209ENST00000544301 CCDC88BA6NC98 1476 aa29.06■■■□□ 2.24
VIM-209ENST00000544301 HRCP23327 699 aa29.06■■■□□ 2.24
VIM-209ENST00000544301 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
VIM-209ENST00000544301 PEG3Q9GZU2 1588 aa28.89■■■□□ 2.21
VIM-209ENST00000544301 TRIM26Q12899 539 aaPredicted RBP28.84■■■□□ 2.21
VIM-209ENST00000544301 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
VIM-209ENST00000544301 EHMT2Q96KQ7 1210 aa28.76■■■□□ 2.19
VIM-209ENST00000544301 ATAD2BQ9ULI0 1458 aa28.67■■■□□ 2.18
VIM-209ENST00000544301 BAZ1BQ9UIG0 1483 aaKnown RBP28.55■■■□□ 2.16
VIM-209ENST00000544301 SOGA1O94964 1423 aa28.48■■■□□ 2.15
VIM-209ENST00000544301 WRNQ14191 1432 aaPredicted RBP eCLIP28.43■■■□□ 2.14
VIM-209ENST00000544301 EEA1Q15075 1411 aa28.42■■■□□ 2.14
VIM-209ENST00000544301 PPARGC1BQ86YN6 1023 aaKnown RBP28.39■■■□□ 2.13
VIM-209ENST00000544301 RUSC2Q8N2Y8 1516 aa28.34■■■□□ 2.13
VIM-209ENST00000544301 CSRNP3Q8WYN3 585 aa28.31■■■□□ 2.12
VIM-209ENST00000544301 SYNJ1O43426 1573 aa28.3■■■□□ 2.12
VIM-209ENST00000544301 TNIKQ9UKE5 1360 aa28.25■■■□□ 2.11
VIM-209ENST00000544301 CEP162Q5TB80 1403 aa28.22■■■□□ 2.11
VIM-209ENST00000544301 NCAPD3P42695 1498 aa28.21■■■□□ 2.11
VIM-209ENST00000544301 HMGXB3Q12766 1538 aa28.2■■■□□ 2.11
VIM-209ENST00000544301 GOLGA3Q08378 1498 aa28.15■■■□□ 2.1
VIM-209ENST00000544301 ZEB1P37275 1124 aaPredicted RBP28.1■■■□□ 2.09
VIM-209ENST00000544301 UBTFP17480 764 aaKnown RBP28.09■■■□□ 2.09
VIM-209ENST00000544301 TOP2BQ02880 1626 aa28.04■■■□□ 2.08
VIM-209ENST00000544301 KIF21BO75037 1637 aa28.03■■■□□ 2.08
VIM-209ENST00000544301 CEP164Q9UPV0 1460 aa28.03■■■□□ 2.08
VIM-209ENST00000544301 BIVM-ERCC5R4GMW8 1640 aa27.97■■■□□ 2.07
VIM-209ENST00000544301 CFTRP13569 1480 aa27.87■■■□□ 2.05
VIM-209ENST00000544301 RAPGEF2Q9Y4G8 1499 aa27.83■■■□□ 2.04
VIM-209ENST00000544301 CUX1P39880 1505 aa27.81■■■□□ 2.04
VIM-209ENST00000544301 CLIP1P30622 1438 aa27.77■■■□□ 2.04
VIM-209ENST00000544301 TTBK1Q5TCY1 1321 aaPredicted RBP27.76■■■□□ 2.03
VIM-209ENST00000544301 PRDM2Q13029 1718 aa27.69■■■□□ 2.02
VIM-209ENST00000544301 PRXQ9BXM0 1461 aa27.66■■■□□ 2.02
VIM-209ENST00000544301 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.66■■■□□ 2.02
VIM-209ENST00000544301 ERICH3Q5RHP9 1530 aa27.66■■■□□ 2.02
VIM-209ENST00000544301 VPS8Q8N3P4 1428 aa27.64■■■□□ 2.01
VIM-209ENST00000544301 CC2D2AQ9P2K1 1620 aa27.62■■■□□ 2.01
VIM-209ENST00000544301 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
VIM-209ENST00000544301 KIF27Q86VH2 1401 aa27.6■■■□□ 2.01
VIM-209ENST00000544301 CCER1Q8TC90 406 aaPredicted RBP27.59■■■□□ 2.01
VIM-209ENST00000544301 RANGAP1P46060 587 aaPredicted RBP27.49■■□□□ 1.99
VIM-209ENST00000544301 APLP2Q06481 763 aa27.41■■□□□ 1.98
VIM-209ENST00000544301 ARAP1Q96P48 1450 aa27.39■■□□□ 1.98
VIM-209ENST00000544301 CUX2O14529 1486 aa27.36■■□□□ 1.97
VIM-209ENST00000544301 FGD5Q6ZNL6 1462 aa27.34■■□□□ 1.97
VIM-209ENST00000544301 IGF1RP08069 1367 aa27.32■■□□□ 1.96
VIM-209ENST00000544301 FANCD2Q9BXW9 1451 aa27.32■■□□□ 1.96
VIM-209ENST00000544301 HNRNPUL2Q1KMD3 747 aaKnown RBP27.23■■□□□ 1.95
VIM-209ENST00000544301 ARHGAP35Q9NRY4 1499 aa27.21■■□□□ 1.95
VIM-209ENST00000544301 DNMBPQ6XZF7 1577 aa27.19■■□□□ 1.94
VIM-209ENST00000544301 CARMIL1Q5VZK9 1371 aa27.18■■□□□ 1.94
VIM-209ENST00000544301 NESP48681 1621 aa27.17■■□□□ 1.94
VIM-209ENST00000544301 TOPBP1Q92547 1522 aa27.12■■□□□ 1.93
VIM-209ENST00000544301 KANK4Q5T7N3 995 aaPredicted RBP27.11■■□□□ 1.93
VIM-209ENST00000544301 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
VIM-209ENST00000544301 POLA1P09884 1462 aaPredicted RBP27.07■■□□□ 1.92
VIM-209ENST00000544301 RAD54L2Q9Y4B4 1467 aa27.07■■□□□ 1.92
VIM-209ENST00000544301 LAMC3Q9Y6N6 1575 aa27.06■■□□□ 1.92
VIM-209ENST00000544301 RRBP1Q9P2E9 1410 aaKnown RBP26.96■■□□□ 1.91
VIM-209ENST00000544301 URB2Q14146 1524 aaKnown RBP26.95■■□□□ 1.9
VIM-209ENST00000544301 MAP3K1Q13233 1512 aa26.91■■□□□ 1.9
VIM-209ENST00000544301 CUL7Q14999 1698 aa26.9■■□□□ 1.9
VIM-209ENST00000544301 WDR97A6NE52 1622 aa26.88■■□□□ 1.89
VIM-209ENST00000544301 TIAM1Q13009 1591 aa26.87■■□□□ 1.89
VIM-209ENST00000544301 DIEXFQ68CQ4 756 aaKnown RBP26.87■■□□□ 1.89
VIM-209ENST00000544301 DNAJC5BQ9UF47 199 aa26.87■■□□□ 1.89
VIM-209ENST00000544301 PDS5BQ9NTI5 1447 aa26.86■■□□□ 1.89
VIM-209ENST00000544301 CCNB3Q8WWL7 1395 aa26.83■■□□□ 1.89
VIM-209ENST00000544301 FHAD1B1AJZ9 1412 aa26.83■■□□□ 1.88
VIM-209ENST00000544301 ZNF316A6NFI3 1004 aaPredicted RBP26.81■■□□□ 1.88
VIM-209ENST00000544301 ABCA5Q8WWZ7 1642 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms