RNA–Protein interactions for RNA: ENST00000481260.1

RAPGEF1-207, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 5

Gene RAPGEF1, Length 1,034 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-207ENST00000481260 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
RAPGEF1-207ENST00000481260 CCDC180Q9P1Z9 1646 aa24.88■■□□□ 1.57
RAPGEF1-207ENST00000481260 ABCC9O60706 1549 aa24.68■■□□□ 1.54
RAPGEF1-207ENST00000481260 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
RAPGEF1-207ENST00000481260 RB1CC1Q8TDY2 1594 aa23.51■■□□□ 1.35
RAPGEF1-207ENST00000481260 NACADO15069 1562 aa23.44■■□□□ 1.34
RAPGEF1-207ENST00000481260 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
RAPGEF1-207ENST00000481260 MYO15BQ96JP2 1530 aa23.22■■□□□ 1.31
RAPGEF1-207ENST00000481260 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
RAPGEF1-207ENST00000481260 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.29
RAPGEF1-207ENST00000481260 UNC13AQ9UPW8 1703 aa23.06■■□□□ 1.28
RAPGEF1-207ENST00000481260 BICRAQ9NZM4 1560 aa22.95■■□□□ 1.26
RAPGEF1-207ENST00000481260 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.25
RAPGEF1-207ENST00000481260 SCRIBQ14160 1630 aa22.86■■□□□ 1.25
RAPGEF1-207ENST00000481260 SHROOM4Q9ULL8 1493 aa22.46■■□□□ 1.19
RAPGEF1-207ENST00000481260 EIF4G1Q04637 1599 aaKnown RBP22.29■■□□□ 1.16
RAPGEF1-207ENST00000481260 CC2D2AQ9P2K1 1620 aa22.26■■□□□ 1.15
RAPGEF1-207ENST00000481260 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
RAPGEF1-207ENST00000481260 SMARCA4P51532 1647 aa21.8■■□□□ 1.08
RAPGEF1-207ENST00000481260 ATAD2BQ9ULI0 1458 aa21.74■■□□□ 1.07
RAPGEF1-207ENST00000481260 MROH2BQ7Z745 1585 aa21.7■■□□□ 1.06
RAPGEF1-207ENST00000481260 NCAPD3P42695 1498 aa21.7■■□□□ 1.06
RAPGEF1-207ENST00000481260 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
RAPGEF1-207ENST00000481260 SMARCA2P51531 1590 aa21.6■■□□□ 1.05
RAPGEF1-207ENST00000481260 HMGXB3Q12766 1538 aa21.54■■□□□ 1.04
RAPGEF1-207ENST00000481260 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
RAPGEF1-207ENST00000481260 BAZ1BQ9UIG0 1483 aaKnown RBP21.51■■□□□ 1.03
RAPGEF1-207ENST00000481260 WIZO95785 1651 aa21.44■■□□□ 1.02
RAPGEF1-207ENST00000481260 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
RAPGEF1-207ENST00000481260 NESP48681 1621 aa21.36■■□□□ 1.01
RAPGEF1-207ENST00000481260 ERCC6Q03468 1493 aa21.18■□□□□ 0.98
RAPGEF1-207ENST00000481260 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
RAPGEF1-207ENST00000481260 LAMC3Q9Y6N6 1575 aa21.09■□□□□ 0.97
RAPGEF1-207ENST00000481260 CADPSQ9ULU8 1353 aa21.07■□□□□ 0.96
RAPGEF1-207ENST00000481260 KIF21AQ7Z4S6 1674 aa21■□□□□ 0.95
RAPGEF1-207ENST00000481260 DNAJC5Q9H3Z4 198 aa20.99■□□□□ 0.95
RAPGEF1-207ENST00000481260 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
RAPGEF1-207ENST00000481260 CCDC88BA6NC98 1476 aa20.96■□□□□ 0.95
RAPGEF1-207ENST00000481260 PDS5BQ9NTI5 1447 aa20.95■□□□□ 0.95
RAPGEF1-207ENST00000481260 CUX2O14529 1486 aa20.94■□□□□ 0.94
RAPGEF1-207ENST00000481260 CFTRP13569 1480 aa20.92■□□□□ 0.94
RAPGEF1-207ENST00000481260 FANCD2Q9BXW9 1451 aa20.85■□□□□ 0.93
RAPGEF1-207ENST00000481260 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
RAPGEF1-207ENST00000481260 SUPT5HO00267 1087 aaKnown RBP20.8■□□□□ 0.92
RAPGEF1-207ENST00000481260 CEP164Q9UPV0 1460 aa20.8■□□□□ 0.92
RAPGEF1-207ENST00000481260 WDR62O43379 1518 aa20.74■□□□□ 0.91
RAPGEF1-207ENST00000481260 URB2Q14146 1524 aaKnown RBP20.71■□□□□ 0.91
RAPGEF1-207ENST00000481260 PRDM2Q13029 1718 aa20.64■□□□□ 0.9
RAPGEF1-207ENST00000481260 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
RAPGEF1-207ENST00000481260 DNMBPQ6XZF7 1577 aa20.43■□□□□ 0.86
RAPGEF1-207ENST00000481260 ZNF608Q9ULD9 1512 aaPredicted RBP20.42■□□□□ 0.86
RAPGEF1-207ENST00000481260 CUX1P39880 1505 aa20.36■□□□□ 0.85
RAPGEF1-207ENST00000481260 IFT140Q96RY7 1462 aa20.35■□□□□ 0.85
RAPGEF1-207ENST00000481260 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
RAPGEF1-207ENST00000481260 POLA1P09884 1462 aaPredicted RBP20.34■□□□□ 0.85
RAPGEF1-207ENST00000481260 RAD54L2Q9Y4B4 1467 aa20.32■□□□□ 0.84
RAPGEF1-207ENST00000481260 TARBP1Q13395 1621 aaKnown RBP20.3■□□□□ 0.84
RAPGEF1-207ENST00000481260 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
RAPGEF1-207ENST00000481260 AQRO60306 1485 aaKnown RBP eCLIP20.26■□□□□ 0.831e-6■■■■■ 36.2
RAPGEF1-207ENST00000481260 EIF4G3O43432 1585 aaKnown RBP20.24■□□□□ 0.83
RAPGEF1-207ENST00000481260 SOGA1O94964 1423 aa20.23■□□□□ 0.83
RAPGEF1-207ENST00000481260 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
RAPGEF1-207ENST00000481260 SYNJ1O43426 1573 aa20.14■□□□□ 0.81
RAPGEF1-207ENST00000481260 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
RAPGEF1-207ENST00000481260 OSCARQ8IYS5 282 aa20.09■□□□□ 0.81
RAPGEF1-207ENST00000481260 WDR97A6NE52 1622 aa20.07■□□□□ 0.8
RAPGEF1-207ENST00000481260 TOP2BQ02880 1626 aa20.05■□□□□ 0.8
RAPGEF1-207ENST00000481260 BIVM-ERCC5R4GMW8 1640 aa20.05■□□□□ 0.8
RAPGEF1-207ENST00000481260 SNAPC4Q5SXM2 1469 aa20.04■□□□□ 0.8
RAPGEF1-207ENST00000481260 ABCA10Q8WWZ4 1543 aa20.02■□□□□ 0.8
RAPGEF1-207ENST00000481260 FBLN2P98095 1184 aa20.01■□□□□ 0.79
RAPGEF1-207ENST00000481260 CHD1O14646 1710 aa20■□□□□ 0.79
RAPGEF1-207ENST00000481260 TRIM41Q8WV44 630 aa19.99■□□□□ 0.79
RAPGEF1-207ENST00000481260 GAPVD1Q14C86 1478 aa19.99■□□□□ 0.79
RAPGEF1-207ENST00000481260 ABCA5Q8WWZ7 1642 aa19.97■□□□□ 0.79
RAPGEF1-207ENST00000481260 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
RAPGEF1-207ENST00000481260 PBRM1Q86U86 1689 aa19.93■□□□□ 0.78
RAPGEF1-207ENST00000481260 MAGI1Q96QZ7 1491 aaPredicted RBP19.9■□□□□ 0.78
RAPGEF1-207ENST00000481260 CHMP7Q8WUX9 453 aaPredicted RBP19.87■□□□□ 0.77
RAPGEF1-207ENST00000481260 SYNJ2O15056 1496 aa19.86■□□□□ 0.77
RAPGEF1-207ENST00000481260 RIMBP3CA6NJZ7 1639 aa19.84■□□□□ 0.77
RAPGEF1-207ENST00000481260 RIMBP3BA6NNM3 1639 aa19.84■□□□□ 0.77
RAPGEF1-207ENST00000481260 RIMBP3Q9UFD9 1639 aa19.84■□□□□ 0.77
RAPGEF1-207ENST00000481260 ARHGEF11O15085 1522 aa19.82■□□□□ 0.76
RAPGEF1-207ENST00000481260 ADAMTS12P58397 1594 aa19.8■□□□□ 0.76
RAPGEF1-207ENST00000481260 CLASP1Q7Z460 1538 aa19.8■□□□□ 0.76
RAPGEF1-207ENST00000481260 GRIN2AQ12879 1464 aa19.74■□□□□ 0.75
RAPGEF1-207ENST00000481260 ERICH3Q5RHP9 1530 aa19.74■□□□□ 0.75
RAPGEF1-207ENST00000481260 FHAD1B1AJZ9 1412 aa19.72■□□□□ 0.75
RAPGEF1-207ENST00000481260 CEP170Q5SW79 1584 aa19.7■□□□□ 0.74
RAPGEF1-207ENST00000481260 ARAP1Q96P48 1450 aa19.7■□□□□ 0.74
RAPGEF1-207ENST00000481260 IGF1RP08069 1367 aa19.69■□□□□ 0.74
RAPGEF1-207ENST00000481260 CYB5RLQ6IPT4 315 aa19.68■□□□□ 0.74
RAPGEF1-207ENST00000481260 NUP160Q12769 1436 aa19.67■□□□□ 0.74
RAPGEF1-207ENST00000481260 KIF27Q86VH2 1401 aa19.66■□□□□ 0.74
RAPGEF1-207ENST00000481260 RUSC2Q8N2Y8 1516 aa19.65■□□□□ 0.74
RAPGEF1-207ENST00000481260 ERCC6L2Q5T890 1561 aa19.63■□□□□ 0.73
RAPGEF1-207ENST00000481260 CARMIL1Q5VZK9 1371 aa19.52■□□□□ 0.72
RAPGEF1-207ENST00000481260 SHROOM2Q13796 1616 aa19.51■□□□□ 0.71
RAPGEF1-207ENST00000481260 CUL7Q14999 1698 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms