RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NISCHQ9Y2I1 1504 aa37.23■■■■□ 3.55
VIM-206ENST00000487938 CCDC180Q9P1Z9 1646 aa31.95■■■□□ 2.7
VIM-206ENST00000487938 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
VIM-206ENST00000487938 ZCCHC6Q5VYS8 1495 aaKnown RBP31.42■■■□□ 2.62
VIM-206ENST00000487938 SUPT5HO00267 1087 aaKnown RBP31.26■■■□□ 2.59
VIM-206ENST00000487938 DCAF8L2P0C7V8 631 aa31.04■■■□□ 2.56
VIM-206ENST00000487938 DCAF1Q9Y4B6 1507 aa30.67■■■□□ 2.5
VIM-206ENST00000487938 CHIC1Q5VXU3 224 aa30.34■■■□□ 2.45
VIM-206ENST00000487938 MYO15BQ96JP2 1530 aa30.19■■■□□ 2.42
VIM-206ENST00000487938 ABCC9O60706 1549 aa29.79■■■□□ 2.36
VIM-206ENST00000487938 SCRIBQ14160 1630 aa29.7■■■□□ 2.34
VIM-206ENST00000487938 NACADO15069 1562 aa29.64■■■□□ 2.34
VIM-206ENST00000487938 LOC105371045A0A1W2PR82 267 aa29.52■■■□□ 2.32
VIM-206ENST00000487938 RSF1Q96T23 1441 aaPredicted RBP29.47■■■□□ 2.31
VIM-206ENST00000487938 PCGF6Q9BYE7 350 aa29.45■■■□□ 2.31
VIM-206ENST00000487938 HRCP23327 699 aa29.38■■■□□ 2.29
VIM-206ENST00000487938 RB1CC1Q8TDY2 1594 aa29.23■■■□□ 2.27
VIM-206ENST00000487938 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
VIM-206ENST00000487938 CECR2Q9BXF3 1484 aa29.07■■■□□ 2.24
VIM-206ENST00000487938 MROH2BQ7Z745 1585 aa28.94■■■□□ 2.22
VIM-206ENST00000487938 FAM9AQ8IZU1 332 aaPredicted RBP28.91■■■□□ 2.22
VIM-206ENST00000487938 PPARGC1BQ86YN6 1023 aaKnown RBP28.87■■■□□ 2.21
VIM-206ENST00000487938 TRIM26Q12899 539 aaPredicted RBP28.84■■■□□ 2.21
VIM-206ENST00000487938 WIZO95785 1651 aa28.8■■■□□ 2.2
VIM-206ENST00000487938 EHMT2Q96KQ7 1210 aa28.72■■■□□ 2.19
VIM-206ENST00000487938 UNC13AQ9UPW8 1703 aa28.66■■■□□ 2.18
VIM-206ENST00000487938 BAZ1AQ9NRL2 1556 aaPredicted RBP28.66■■■□□ 2.18
VIM-206ENST00000487938 SMARCA4P51532 1647 aa28.44■■■□□ 2.14
VIM-206ENST00000487938 BICRAQ9NZM4 1560 aa28.38■■■□□ 2.13
VIM-206ENST00000487938 PABPN1Q86U42 306 aaKnown RBP eCLIP28.35■■■□□ 2.13
VIM-206ENST00000487938 EIF4G1Q04637 1599 aaKnown RBP28.31■■■□□ 2.12
VIM-206ENST00000487938 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
VIM-206ENST00000487938 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
VIM-206ENST00000487938 ABCC8Q09428 1581 aa28.17■■■□□ 2.1
VIM-206ENST00000487938 ZEB1P37275 1124 aaPredicted RBP28.16■■■□□ 2.1
VIM-206ENST00000487938 SMARCA2P51531 1590 aa28.15■■■□□ 2.1
VIM-206ENST00000487938 PEG3Q9GZU2 1588 aa27.99■■■□□ 2.07
VIM-206ENST00000487938 SOGA1O94964 1423 aa27.93■■■□□ 2.06
VIM-206ENST00000487938 ATAD2BQ9ULI0 1458 aa27.82■■■□□ 2.04
VIM-206ENST00000487938 RUSC2Q8N2Y8 1516 aa27.81■■■□□ 2.04
VIM-206ENST00000487938 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
VIM-206ENST00000487938 TTBK1Q5TCY1 1321 aaPredicted RBP27.77■■■□□ 2.04
VIM-206ENST00000487938 CEP162Q5TB80 1403 aa27.77■■■□□ 2.04
VIM-206ENST00000487938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.75■■■□□ 2.03
VIM-206ENST00000487938 UBTFP17480 764 aaKnown RBP27.72■■■□□ 2.03
VIM-206ENST00000487938 BAZ1BQ9UIG0 1483 aaKnown RBP27.72■■■□□ 2.03
VIM-206ENST00000487938 TNIKQ9UKE5 1360 aa27.71■■■□□ 2.03
VIM-206ENST00000487938 WRNQ14191 1432 aaPredicted RBP eCLIP27.68■■■□□ 2.02
VIM-206ENST00000487938 EEA1Q15075 1411 aa27.68■■■□□ 2.02
VIM-206ENST00000487938 CCER1Q8TC90 406 aaPredicted RBP27.65■■■□□ 2.02
VIM-206ENST00000487938 GOLGA3Q08378 1498 aa27.54■■■□□ 2
VIM-206ENST00000487938 SYNJ1O43426 1573 aa27.53■■■□□ 2
VIM-206ENST00000487938 NCAPD3P42695 1498 aa27.41■■□□□ 1.98
VIM-206ENST00000487938 HMGXB3Q12766 1538 aa27.38■■□□□ 1.97
VIM-206ENST00000487938 CEP164Q9UPV0 1460 aa27.38■■□□□ 1.97
VIM-206ENST00000487938 KIF21BO75037 1637 aa27.3■■□□□ 1.96
VIM-206ENST00000487938 CLIP1P30622 1438 aa27.26■■□□□ 1.95
VIM-206ENST00000487938 RANGAP1P46060 587 aaPredicted RBP27.25■■□□□ 1.95
VIM-206ENST00000487938 RAPGEF2Q9Y4G8 1499 aa27.23■■□□□ 1.95
VIM-206ENST00000487938 TOP2BQ02880 1626 aa27.15■■□□□ 1.94
VIM-206ENST00000487938 HNRNPUL2Q1KMD3 747 aaKnown RBP27.13■■□□□ 1.93
VIM-206ENST00000487938 VPS8Q8N3P4 1428 aa27.11■■□□□ 1.93
VIM-206ENST00000487938 SCAF1Q9H7N4 1312 aaKnown RBP27.09■■□□□ 1.93
VIM-206ENST00000487938 DIEXFQ68CQ4 756 aaKnown RBP27.09■■□□□ 1.93
VIM-206ENST00000487938 APLP2Q06481 763 aa27.08■■□□□ 1.93
VIM-206ENST00000487938 CFTRP13569 1480 aa27.04■■□□□ 1.92
VIM-206ENST00000487938 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
VIM-206ENST00000487938 CUX1P39880 1505 aa26.93■■□□□ 1.9
VIM-206ENST00000487938 PRXQ9BXM0 1461 aa26.92■■□□□ 1.9
VIM-206ENST00000487938 CC2D2AQ9P2K1 1620 aa26.89■■□□□ 1.89
VIM-206ENST00000487938 ZNF316A6NFI3 1004 aaPredicted RBP26.88■■□□□ 1.89
VIM-206ENST00000487938 ERICH3Q5RHP9 1530 aa26.86■■□□□ 1.89
VIM-206ENST00000487938 ACIN1Q9UKV3 1341 aaKnown RBP26.84■■□□□ 1.89
VIM-206ENST00000487938 NEUROD1Q13562 356 aa26.83■■□□□ 1.89
VIM-206ENST00000487938 CADPSQ9ULU8 1353 aa26.82■■□□□ 1.88
VIM-206ENST00000487938 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
VIM-206ENST00000487938 ARAP1Q96P48 1450 aa26.8■■□□□ 1.88
VIM-206ENST00000487938 PRDM2Q13029 1718 aa26.79■■□□□ 1.88
VIM-206ENST00000487938 KANK4Q5T7N3 995 aaPredicted RBP26.76■■□□□ 1.87
VIM-206ENST00000487938 CENPBP07199 599 aaPredicted RBP26.67■■□□□ 1.86
VIM-206ENST00000487938 ARHGAP35Q9NRY4 1499 aa26.58■■□□□ 1.85
VIM-206ENST00000487938 CUX2O14529 1486 aa26.58■■□□□ 1.85
VIM-206ENST00000487938 IGF1RP08069 1367 aa26.56■■□□□ 1.84
VIM-206ENST00000487938 GTF3C3Q9Y5Q9 886 aa26.56■■□□□ 1.84
VIM-206ENST00000487938 MIER1Q8N108 512 aa26.54■■□□□ 1.84
VIM-206ENST00000487938 FANCD2Q9BXW9 1451 aa26.53■■□□□ 1.84
VIM-206ENST00000487938 FGD5Q6ZNL6 1462 aa26.51■■□□□ 1.83
VIM-206ENST00000487938 DHX57Q6P158 1386 aaKnown RBP26.51■■□□□ 1.83
VIM-206ENST00000487938 YTHDC1Q96MU7 727 aaKnown RBP26.5■■□□□ 1.83
VIM-206ENST00000487938 RRBP1Q9P2E9 1410 aaKnown RBP26.47■■□□□ 1.83
VIM-206ENST00000487938 CARMIL1Q5VZK9 1371 aa26.45■■□□□ 1.82
VIM-206ENST00000487938 ITGAEP38570 1179 aa26.44■■□□□ 1.82
VIM-206ENST00000487938 CLSPNQ9HAW4 1339 aa26.42■■□□□ 1.82
VIM-206ENST00000487938 NESP48681 1621 aa26.4■■□□□ 1.82
VIM-206ENST00000487938 CCNB3Q8WWL7 1395 aa26.4■■□□□ 1.82
VIM-206ENST00000487938 PELP1Q8IZL8 1130 aaKnown RBP26.38■■□□□ 1.81
VIM-206ENST00000487938 DNMBPQ6XZF7 1577 aa26.37■■□□□ 1.81
VIM-206ENST00000487938 TOPBP1Q92547 1522 aa26.31■■□□□ 1.8
VIM-206ENST00000487938 P3H3Q8IVL6 736 aa26.31■■□□□ 1.8
VIM-206ENST00000487938 LAMC3Q9Y6N6 1575 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms