RNA–Protein interactions for RNA: ENST00000429650.1

SNRNP200-202, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 2

Gene SNRNP200, Length 2,637 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-202ENST00000429650 NISCHQ9Y2I1 1504 aa27.68■■■□□ 2.02
SNRNP200-202ENST00000429650 CCDC180Q9P1Z9 1646 aa23.57■■□□□ 1.36
SNRNP200-202ENST00000429650 SHROOM4Q9ULL8 1493 aa23.5■■□□□ 1.35
SNRNP200-202ENST00000429650 ZCCHC6Q5VYS8 1495 aaKnown RBP23.44■■□□□ 1.34
SNRNP200-202ENST00000429650 SUPT5HO00267 1087 aaKnown RBP23.05■■□□□ 1.28
SNRNP200-202ENST00000429650 DCAF8L2P0C7V8 631 aa22.82■■□□□ 1.24
SNRNP200-202ENST00000429650 DCAF1Q9Y4B6 1507 aa22.76■■□□□ 1.23
SNRNP200-202ENST00000429650 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
SNRNP200-202ENST00000429650 MYO15BQ96JP2 1530 aa22.42■■□□□ 1.18
SNRNP200-202ENST00000429650 ABCC9O60706 1549 aa22.12■■□□□ 1.13
SNRNP200-202ENST00000429650 SCRIBQ14160 1630 aa22.02■■□□□ 1.12
SNRNP200-202ENST00000429650 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.1
SNRNP200-202ENST00000429650 HRCP23327 699 aa21.84■■□□□ 1.09
SNRNP200-202ENST00000429650 LOC105371045A0A1W2PR82 267 aa21.77■■□□□ 1.08
SNRNP200-202ENST00000429650 PCGF6Q9BYE7 350 aa21.76■■□□□ 1.07
SNRNP200-202ENST00000429650 NACADO15069 1562 aa21.76■■□□□ 1.07
SNRNP200-202ENST00000429650 RB1CC1Q8TDY2 1594 aa21.68■■□□□ 1.06
SNRNP200-202ENST00000429650 CECR2Q9BXF3 1484 aa21.55■■□□□ 1.04
SNRNP200-202ENST00000429650 TRIM41Q8WV44 630 aa21.5■■□□□ 1.03
SNRNP200-202ENST00000429650 MROH2BQ7Z745 1585 aa21.5■■□□□ 1.03
SNRNP200-202ENST00000429650 TRIM26Q12899 539 aaPredicted RBP21.4■■□□□ 1.02
SNRNP200-202ENST00000429650 WIZO95785 1651 aa21.39■■□□□ 1.02
SNRNP200-202ENST00000429650 PPARGC1BQ86YN6 1023 aaKnown RBP21.32■■□□□ 1
SNRNP200-202ENST00000429650 BAZ1AQ9NRL2 1556 aaPredicted RBP21.3■■□□□ 1
SNRNP200-202ENST00000429650 FAM9AQ8IZU1 332 aaPredicted RBP21.28■■□□□ 1
SNRNP200-202ENST00000429650 EHMT2Q96KQ7 1210 aa21.21■□□□□ 0.99
SNRNP200-202ENST00000429650 EIF4G1Q04637 1599 aaKnown RBP21.17■□□□□ 0.98
SNRNP200-202ENST00000429650 UNC13AQ9UPW8 1703 aa21.1■□□□□ 0.97
SNRNP200-202ENST00000429650 SMARCA4P51532 1647 aa21.09■□□□□ 0.97
SNRNP200-202ENST00000429650 TOP2AP11388 1531 aaKnown RBP21.08■□□□□ 0.97
SNRNP200-202ENST00000429650 SMARCA2P51531 1590 aa20.96■□□□□ 0.95
SNRNP200-202ENST00000429650 CCDC88BA6NC98 1476 aa20.96■□□□□ 0.95
SNRNP200-202ENST00000429650 ZEB1P37275 1124 aaPredicted RBP20.95■□□□□ 0.94
SNRNP200-202ENST00000429650 ABCC8Q09428 1581 aa20.9■□□□□ 0.94
SNRNP200-202ENST00000429650 BICRAQ9NZM4 1560 aa20.82■□□□□ 0.92
SNRNP200-202ENST00000429650 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.917e-7■■□□□ 14
SNRNP200-202ENST00000429650 PEG3Q9GZU2 1588 aa20.71■□□□□ 0.91
SNRNP200-202ENST00000429650 SOGA1O94964 1423 aa20.7■□□□□ 0.9
SNRNP200-202ENST00000429650 WRNQ14191 1432 aaPredicted RBP eCLIP20.66■□□□□ 0.9
SNRNP200-202ENST00000429650 EEA1Q15075 1411 aa20.66■□□□□ 0.9
SNRNP200-202ENST00000429650 CEP162Q5TB80 1403 aa20.64■□□□□ 0.89
SNRNP200-202ENST00000429650 TNIKQ9UKE5 1360 aa20.62■□□□□ 0.89
SNRNP200-202ENST00000429650 RUSC2Q8N2Y8 1516 aa20.6■□□□□ 0.89
SNRNP200-202ENST00000429650 CSRNP3Q8WYN3 585 aa20.58■□□□□ 0.89
SNRNP200-202ENST00000429650 ATAD2BQ9ULI0 1458 aa20.51■□□□□ 0.87
SNRNP200-202ENST00000429650 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
SNRNP200-202ENST00000429650 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
SNRNP200-202ENST00000429650 SYNJ1O43426 1573 aa20.48■□□□□ 0.87
SNRNP200-202ENST00000429650 UBTFP17480 764 aaKnown RBP20.47■□□□□ 0.87
SNRNP200-202ENST00000429650 PELP1Q8IZL8 1130 aaKnown RBP20.47■□□□□ 0.87
SNRNP200-202ENST00000429650 BAZ1BQ9UIG0 1483 aaKnown RBP20.46■□□□□ 0.87
SNRNP200-202ENST00000429650 CCER1Q8TC90 406 aaPredicted RBP20.45■□□□□ 0.86
SNRNP200-202ENST00000429650 TTBK1Q5TCY1 1321 aaPredicted RBP20.45■□□□□ 0.86
SNRNP200-202ENST00000429650 MYT1Q01538 1121 aa20.42■□□□□ 0.86
SNRNP200-202ENST00000429650 KIF21BO75037 1637 aa20.39■□□□□ 0.85
SNRNP200-202ENST00000429650 CEP164Q9UPV0 1460 aa20.38■□□□□ 0.85
SNRNP200-202ENST00000429650 SLC24A1O60721 1099 aa20.32■□□□□ 0.84
SNRNP200-202ENST00000429650 TOP2BQ02880 1626 aa20.24■□□□□ 0.83
SNRNP200-202ENST00000429650 CLIP1P30622 1438 aa20.24■□□□□ 0.83
SNRNP200-202ENST00000429650 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
SNRNP200-202ENST00000429650 BIVM-ERCC5R4GMW8 1640 aa20.19■□□□□ 0.82
SNRNP200-202ENST00000429650 VPS8Q8N3P4 1428 aa20.18■□□□□ 0.82
SNRNP200-202ENST00000429650 HMGXB3Q12766 1538 aa20.15■□□□□ 0.82
SNRNP200-202ENST00000429650 NCAPD3P42695 1498 aa20.12■□□□□ 0.81
SNRNP200-202ENST00000429650 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
SNRNP200-202ENST00000429650 DIEXFQ68CQ4 756 aaKnown RBP20.07■□□□□ 0.8
SNRNP200-202ENST00000429650 RANGAP1P46060 587 aaPredicted RBP20.06■□□□□ 0.8
SNRNP200-202ENST00000429650 ERICH3Q5RHP9 1530 aa20.06■□□□□ 0.8
SNRNP200-202ENST00000429650 PRXQ9BXM0 1461 aa20.04■□□□□ 0.8
SNRNP200-202ENST00000429650 CUX1P39880 1505 aa20.02■□□□□ 0.8
SNRNP200-202ENST00000429650 APLP2Q06481 763 aa20.02■□□□□ 0.8
SNRNP200-202ENST00000429650 HNRNPUL2Q1KMD3 747 aaKnown RBP20.02■□□□□ 0.79
SNRNP200-202ENST00000429650 CFTRP13569 1480 aa19.97■□□□□ 0.79
SNRNP200-202ENST00000429650 ARAP1Q96P48 1450 aa19.94■□□□□ 0.78
SNRNP200-202ENST00000429650 ZNF316A6NFI3 1004 aaPredicted RBP19.93■□□□□ 0.78
SNRNP200-202ENST00000429650 ACIN1Q9UKV3 1341 aaKnown RBP19.93■□□□□ 0.78
SNRNP200-202ENST00000429650 KIF27Q86VH2 1401 aa19.93■□□□□ 0.78
SNRNP200-202ENST00000429650 NEUROD1Q13562 356 aa19.89■□□□□ 0.77
SNRNP200-202ENST00000429650 PRDM2Q13029 1718 aa19.87■□□□□ 0.77
SNRNP200-202ENST00000429650 CENPBP07199 599 aaPredicted RBP19.81■□□□□ 0.76
SNRNP200-202ENST00000429650 KANK4Q5T7N3 995 aaPredicted RBP19.78■□□□□ 0.76
SNRNP200-202ENST00000429650 ARHGAP35Q9NRY4 1499 aa19.76■□□□□ 0.75
SNRNP200-202ENST00000429650 RRBP1Q9P2E9 1410 aaKnown RBP19.73■□□□□ 0.75
SNRNP200-202ENST00000429650 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
SNRNP200-202ENST00000429650 CUX2O14529 1486 aa19.72■□□□□ 0.75
SNRNP200-202ENST00000429650 CLSPNQ9HAW4 1339 aa19.71■□□□□ 0.75
SNRNP200-202ENST00000429650 DHX57Q6P158 1386 aaKnown RBP19.7■□□□□ 0.74
SNRNP200-202ENST00000429650 IGF1RP08069 1367 aa19.7■□□□□ 0.74
SNRNP200-202ENST00000429650 PRKCSHP14314 528 aaPredicted RBP19.68■□□□□ 0.74
SNRNP200-202ENST00000429650 GTF3C3Q9Y5Q9 886 aa19.68■□□□□ 0.74
SNRNP200-202ENST00000429650 FGD5Q6ZNL6 1462 aa19.65■□□□□ 0.74
SNRNP200-202ENST00000429650 MIER1Q8N108 512 aa19.63■□□□□ 0.73
SNRNP200-202ENST00000429650 CCNB3Q8WWL7 1395 aa19.61■□□□□ 0.73
SNRNP200-202ENST00000429650 CARMIL1Q5VZK9 1371 aa19.61■□□□□ 0.73
SNRNP200-202ENST00000429650 CC2D2AQ9P2K1 1620 aa19.58■□□□□ 0.73
SNRNP200-202ENST00000429650 MAP3K1Q13233 1512 aa19.57■□□□□ 0.72
SNRNP200-202ENST00000429650 TIAM1Q13009 1591 aa19.57■□□□□ 0.72
SNRNP200-202ENST00000429650 YTHDC1Q96MU7 727 aaKnown RBP19.55■□□□□ 0.72
SNRNP200-202ENST00000429650 FANCD2Q9BXW9 1451 aa19.53■□□□□ 0.72
SNRNP200-202ENST00000429650 LRRC9Q6ZRR7 1453 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms